Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02156 and CCNA_02157 are separated by 11 nucleotides CCNA_02157 and CCNA_02158 are separated by 157 nucleotides
CCNA_02156: CCNA_02156 - hypothetical protein, at 2,312,039 to 2,313,451
_02156
CCNA_02157: CCNA_02157 - HipB-family transcriptional regulator, at 2,313,463 to 2,313,810
_02157
CCNA_02158: CCNA_02158 - GT2 family glycosyltransferase, at 2,313,968 to 2,314,924
_02158
Position (kb)
2313
2314 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2312.467 kb on + strand, within CCNA_02156 at 2312.624 kb on + strand, within CCNA_02156 at 2312.686 kb on - strand, within CCNA_02156 at 2312.730 kb on + strand, within CCNA_02156 at 2312.849 kb on + strand, within CCNA_02156 at 2312.857 kb on - strand, within CCNA_02156 at 2312.859 kb on + strand, within CCNA_02156 at 2312.859 kb on + strand, within CCNA_02156 at 2312.859 kb on + strand, within CCNA_02156 at 2312.867 kb on - strand, within CCNA_02156 at 2312.867 kb on - strand, within CCNA_02156 at 2312.869 kb on + strand, within CCNA_02156 at 2312.926 kb on - strand, within CCNA_02156 at 2312.967 kb on - strand, within CCNA_02156 at 2312.967 kb on - strand, within CCNA_02156 at 2312.986 kb on + strand, within CCNA_02156 at 2313.016 kb on - strand, within CCNA_02156 at 2313.052 kb on + strand, within CCNA_02156 at 2313.060 kb on - strand, within CCNA_02156 at 2313.060 kb on - strand, within CCNA_02156 at 2313.072 kb on - strand, within CCNA_02156 at 2313.072 kb on - strand, within CCNA_02156 at 2313.138 kb on + strand, within CCNA_02156 at 2313.156 kb on + strand, within CCNA_02156 at 2313.235 kb on - strand, within CCNA_02156 at 2313.235 kb on - strand, within CCNA_02156 at 2313.272 kb on + strand, within CCNA_02156 at 2313.275 kb on - strand, within CCNA_02156 at 2313.343 kb on + strand at 2313.361 kb on + strand at 2313.361 kb on + strand at 2313.369 kb on - strand at 2313.421 kb on + strand at 2313.434 kb on + strand at 2313.434 kb on + strand at 2313.434 kb on + strand at 2313.442 kb on - strand at 2313.442 kb on - strand at 2313.443 kb on - strand at 2313.461 kb on + strand at 2313.461 kb on + strand at 2313.469 kb on - strand at 2313.469 kb on - strand at 2313.469 kb on - strand at 2313.469 kb on - strand at 2313.515 kb on - strand, within CCNA_02157 at 2313.545 kb on - strand, within CCNA_02157 at 2313.551 kb on - strand, within CCNA_02157 at 2313.596 kb on - strand, within CCNA_02157 at 2313.613 kb on - strand, within CCNA_02157 at 2313.635 kb on - strand, within CCNA_02157 at 2313.642 kb on - strand, within CCNA_02157 at 2313.673 kb on - strand, within CCNA_02157 at 2313.673 kb on - strand, within CCNA_02157 at 2313.703 kb on - strand, within CCNA_02157 at 2313.717 kb on - strand, within CCNA_02157 at 2313.887 kb on + strand at 2313.981 kb on - strand at 2314.036 kb on + strand at 2314.044 kb on - strand at 2314.044 kb on - strand at 2314.059 kb on + strand at 2314.069 kb on + strand, within CCNA_02158 at 2314.077 kb on - strand, within CCNA_02158 at 2314.218 kb on - strand, within CCNA_02158 at 2314.274 kb on + strand, within CCNA_02158 at 2314.303 kb on - strand, within CCNA_02158 at 2314.389 kb on + strand, within CCNA_02158 at 2314.389 kb on + strand, within CCNA_02158 at 2314.434 kb on + strand, within CCNA_02158 at 2314.441 kb on + strand, within CCNA_02158 at 2314.441 kb on + strand, within CCNA_02158 at 2314.456 kb on + strand, within CCNA_02158 at 2314.456 kb on + strand, within CCNA_02158 at 2314.461 kb on + strand, within CCNA_02158 at 2314.464 kb on - strand, within CCNA_02158 at 2314.469 kb on - strand, within CCNA_02158 at 2314.505 kb on + strand, within CCNA_02158 at 2314.557 kb on + strand, within CCNA_02158 at 2314.601 kb on + strand, within CCNA_02158 at 2314.647 kb on - strand, within CCNA_02158 at 2314.647 kb on - strand, within CCNA_02158 at 2314.658 kb on - strand, within CCNA_02158 at 2314.673 kb on - strand, within CCNA_02158 at 2314.675 kb on + strand, within CCNA_02158 at 2314.675 kb on + strand, within CCNA_02158 at 2314.678 kb on - strand, within CCNA_02158 at 2314.678 kb on - strand, within CCNA_02158 at 2314.694 kb on - strand, within CCNA_02158 at 2314.695 kb on - strand, within CCNA_02158 at 2314.750 kb on + strand, within CCNA_02158 at 2314.796 kb on - strand, within CCNA_02158 at 2314.805 kb on + strand, within CCNA_02158 at 2314.805 kb on + strand, within CCNA_02158
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,312,467 + CCNA_02156 0.30 -0.3 2,312,624 + CCNA_02156 0.41 +0.3 2,312,686 - CCNA_02156 0.46 -0.0 2,312,730 + CCNA_02156 0.49 -0.2 2,312,849 + CCNA_02156 0.57 -0.6 2,312,857 - CCNA_02156 0.58 +0.7 2,312,859 + CCNA_02156 0.58 -2.2 2,312,859 + CCNA_02156 0.58 +0.1 2,312,859 + CCNA_02156 0.58 +0.6 2,312,867 - CCNA_02156 0.59 -0.3 2,312,867 - CCNA_02156 0.59 +1.1 2,312,869 + CCNA_02156 0.59 -0.0 2,312,926 - CCNA_02156 0.63 +0.3 2,312,967 - CCNA_02156 0.66 +0.4 2,312,967 - CCNA_02156 0.66 +0.9 2,312,986 + CCNA_02156 0.67 +2.0 2,313,016 - CCNA_02156 0.69 -0.1 2,313,052 + CCNA_02156 0.72 -1.5 2,313,060 - CCNA_02156 0.72 +0.6 2,313,060 - CCNA_02156 0.72 +0.3 2,313,072 - CCNA_02156 0.73 +0.8 2,313,072 - CCNA_02156 0.73 +0.1 2,313,138 + CCNA_02156 0.78 +0.5 2,313,156 + CCNA_02156 0.79 -0.3 2,313,235 - CCNA_02156 0.85 +0.2 2,313,235 - CCNA_02156 0.85 +1.2 2,313,272 + CCNA_02156 0.87 -0.1 2,313,275 - CCNA_02156 0.87 +2.2 2,313,343 + -0.0 2,313,361 + -0.8 2,313,361 + -1.0 2,313,369 - +0.3 2,313,421 + -0.3 2,313,434 + +0.7 2,313,434 + +0.6 2,313,434 + +1.5 2,313,442 - +0.0 2,313,442 - +0.7 2,313,443 - +0.0 2,313,461 + -0.4 2,313,461 + -0.2 2,313,469 - +0.5 2,313,469 - +3.0 2,313,469 - +0.2 2,313,469 - +0.3 2,313,515 - CCNA_02157 0.15 +0.3 2,313,545 - CCNA_02157 0.24 +0.5 2,313,551 - CCNA_02157 0.25 -0.1 2,313,596 - CCNA_02157 0.38 -0.3 2,313,613 - CCNA_02157 0.43 +0.8 2,313,635 - CCNA_02157 0.49 +0.5 2,313,642 - CCNA_02157 0.51 +1.5 2,313,673 - CCNA_02157 0.60 +1.2 2,313,673 - CCNA_02157 0.60 +0.2 2,313,703 - CCNA_02157 0.69 +0.2 2,313,717 - CCNA_02157 0.73 -0.0 2,313,887 + -0.0 2,313,981 - -0.5 2,314,036 + +1.1 2,314,044 - +0.3 2,314,044 - +0.1 2,314,059 + +0.2 2,314,069 + CCNA_02158 0.11 +0.7 2,314,077 - CCNA_02158 0.11 -0.9 2,314,218 - CCNA_02158 0.26 -1.1 2,314,274 + CCNA_02158 0.32 -0.1 2,314,303 - CCNA_02158 0.35 -0.4 2,314,389 + CCNA_02158 0.44 -0.6 2,314,389 + CCNA_02158 0.44 -0.5 2,314,434 + CCNA_02158 0.49 -0.8 2,314,441 + CCNA_02158 0.49 -0.1 2,314,441 + CCNA_02158 0.49 +0.7 2,314,456 + CCNA_02158 0.51 -0.5 2,314,456 + CCNA_02158 0.51 -0.0 2,314,461 + CCNA_02158 0.52 +0.1 2,314,464 - CCNA_02158 0.52 -0.4 2,314,469 - CCNA_02158 0.52 +0.3 2,314,505 + CCNA_02158 0.56 +0.0 2,314,557 + CCNA_02158 0.62 -1.4 2,314,601 + CCNA_02158 0.66 -0.3 2,314,647 - CCNA_02158 0.71 -0.4 2,314,647 - CCNA_02158 0.71 -0.7 2,314,658 - CCNA_02158 0.72 +0.8 2,314,673 - CCNA_02158 0.74 -0.5 2,314,675 + CCNA_02158 0.74 -1.4 2,314,675 + CCNA_02158 0.74 +0.5 2,314,678 - CCNA_02158 0.74 +0.1 2,314,678 - CCNA_02158 0.74 +0.3 2,314,694 - CCNA_02158 0.76 -0.2 2,314,695 - CCNA_02158 0.76 +0.2 2,314,750 + CCNA_02158 0.82 -0.4 2,314,796 - CCNA_02158 0.87 +1.2 2,314,805 + CCNA_02158 0.87 -1.5 2,314,805 + CCNA_02158 0.87 -0.5
Or see this region's nucleotide sequence