Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02140

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02138 and CCNA_02139 overlap by 4 nucleotidesCCNA_02139 and CCNA_02140 overlap by 4 nucleotidesCCNA_02140 and CCNA_02141 are separated by 27 nucleotidesCCNA_02141 and CCNA_02142 are separated by 226 nucleotides CCNA_02138: CCNA_02138 - hypothetical protein, at 2,297,404 to 2,298,198 _02138 CCNA_02139: CCNA_02139 - polar flagellum positioning protein pflI, at 2,298,195 to 2,298,779 _02139 CCNA_02140: CCNA_02140 - flagellar motor switch protein fliM, at 2,298,776 to 2,299,900 _02140 CCNA_02141: CCNA_02141 - flagellar fliL protein, at 2,299,928 to 2,300,545 _02141 CCNA_02142: CCNA_02142 - flagellar basal-body rod protein flgF, at 2,300,772 to 2,301,509 _02142 Position (kb) 2298 2299 2300Strain fitness (log2 ratio) -2 -1 0 1 2at 2297.980 kb on - strand, within CCNA_02138at 2298.247 kb on + strandat 2298.263 kb on + strand, within CCNA_02139at 2298.270 kb on - strand, within CCNA_02139at 2298.310 kb on - strand, within CCNA_02139at 2298.489 kb on - strand, within CCNA_02139at 2298.489 kb on - strand, within CCNA_02139at 2298.489 kb on - strand, within CCNA_02139at 2298.489 kb on - strand, within CCNA_02139at 2298.495 kb on - strand, within CCNA_02139at 2298.495 kb on - strand, within CCNA_02139at 2298.495 kb on - strand, within CCNA_02139at 2298.525 kb on - strand, within CCNA_02139at 2298.609 kb on + strand, within CCNA_02139at 2298.657 kb on + strand, within CCNA_02139at 2298.708 kb on - strand, within CCNA_02139at 2298.822 kb on + strandat 2298.906 kb on - strand, within CCNA_02140at 2298.928 kb on + strand, within CCNA_02140at 2298.956 kb on - strand, within CCNA_02140at 2298.956 kb on - strand, within CCNA_02140at 2299.044 kb on + strand, within CCNA_02140at 2299.052 kb on - strand, within CCNA_02140at 2299.115 kb on - strand, within CCNA_02140at 2299.233 kb on - strand, within CCNA_02140at 2299.300 kb on - strand, within CCNA_02140at 2299.341 kb on + strand, within CCNA_02140at 2299.389 kb on + strand, within CCNA_02140at 2299.467 kb on - strand, within CCNA_02140at 2299.477 kb on - strand, within CCNA_02140at 2299.484 kb on - strand, within CCNA_02140at 2299.555 kb on - strand, within CCNA_02140at 2299.566 kb on - strand, within CCNA_02140at 2299.595 kb on - strand, within CCNA_02140at 2299.643 kb on - strand, within CCNA_02140at 2299.706 kb on - strand, within CCNA_02140at 2299.706 kb on - strand, within CCNA_02140at 2299.750 kb on - strand, within CCNA_02140at 2299.827 kb on - strandat 2299.877 kb on - strandat 2299.926 kb on - strandat 2299.959 kb on + strandat 2299.959 kb on + strandat 2299.965 kb on + strandat 2299.965 kb on + strandat 2299.987 kb on + strandat 2299.990 kb on - strand, within CCNA_02141at 2299.995 kb on - strand, within CCNA_02141at 2300.025 kb on - strand, within CCNA_02141at 2300.057 kb on - strand, within CCNA_02141at 2300.073 kb on + strand, within CCNA_02141at 2300.081 kb on - strand, within CCNA_02141at 2300.081 kb on - strand, within CCNA_02141at 2300.085 kb on - strand, within CCNA_02141at 2300.155 kb on - strand, within CCNA_02141at 2300.225 kb on - strand, within CCNA_02141at 2300.252 kb on - strand, within CCNA_02141at 2300.262 kb on - strand, within CCNA_02141at 2300.422 kb on + strand, within CCNA_02141at 2300.430 kb on - strand, within CCNA_02141at 2300.571 kb on - strandat 2300.592 kb on + strandat 2300.627 kb on + strandat 2300.627 kb on + strandat 2300.635 kb on - strandat 2300.769 kb on + strandat 2300.777 kb on - strandat 2300.777 kb on - strandat 2300.777 kb on - strandat 2300.863 kb on - strand, within CCNA_02142at 2300.868 kb on + strand, within CCNA_02142at 2300.869 kb on - strand, within CCNA_02142at 2300.896 kb on + strand, within CCNA_02142at 2300.899 kb on - strand, within CCNA_02142at 2300.899 kb on - strand, within CCNA_02142

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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2,297,980 - CCNA_02138 0.72 +0.4
2,298,247 + -0.4
2,298,263 + CCNA_02139 0.12 -0.6
2,298,270 - CCNA_02139 0.13 +0.1
2,298,310 - CCNA_02139 0.20 -0.5
2,298,489 - CCNA_02139 0.50 -0.1
2,298,489 - CCNA_02139 0.50 +0.5
2,298,489 - CCNA_02139 0.50 +0.0
2,298,489 - CCNA_02139 0.50 +0.2
2,298,495 - CCNA_02139 0.51 +0.2
2,298,495 - CCNA_02139 0.51 -0.8
2,298,495 - CCNA_02139 0.51 -0.0
2,298,525 - CCNA_02139 0.56 +0.9
2,298,609 + CCNA_02139 0.71 -0.1
2,298,657 + CCNA_02139 0.79 +0.2
2,298,708 - CCNA_02139 0.88 -0.0
2,298,822 + -0.1
2,298,906 - CCNA_02140 0.12 -0.9
2,298,928 + CCNA_02140 0.14 -0.8
2,298,956 - CCNA_02140 0.16 -1.5
2,298,956 - CCNA_02140 0.16 -0.2
2,299,044 + CCNA_02140 0.24 -0.4
2,299,052 - CCNA_02140 0.25 -1.6
2,299,115 - CCNA_02140 0.30 +0.2
2,299,233 - CCNA_02140 0.41 -0.1
2,299,300 - CCNA_02140 0.47 +1.1
2,299,341 + CCNA_02140 0.50 +0.2
2,299,389 + CCNA_02140 0.54 -1.5
2,299,467 - CCNA_02140 0.61 +0.1
2,299,477 - CCNA_02140 0.62 -0.1
2,299,484 - CCNA_02140 0.63 +0.2
2,299,555 - CCNA_02140 0.69 -1.2
2,299,566 - CCNA_02140 0.70 -0.4
2,299,595 - CCNA_02140 0.73 -0.4
2,299,643 - CCNA_02140 0.77 -0.3
2,299,706 - CCNA_02140 0.83 -0.0
2,299,706 - CCNA_02140 0.83 -1.3
2,299,750 - CCNA_02140 0.87 +0.5
2,299,827 - -0.9
2,299,877 - +0.6
2,299,926 - -0.1
2,299,959 + -0.5
2,299,959 + +0.9
2,299,965 + -1.5
2,299,965 + -1.4
2,299,987 + +0.5
2,299,990 - CCNA_02141 0.10 +0.6
2,299,995 - CCNA_02141 0.11 +1.3
2,300,025 - CCNA_02141 0.16 +0.7
2,300,057 - CCNA_02141 0.21 +0.1
2,300,073 + CCNA_02141 0.23 -1.1
2,300,081 - CCNA_02141 0.25 -2.5
2,300,081 - CCNA_02141 0.25 +0.4
2,300,085 - CCNA_02141 0.25 +0.9
2,300,155 - CCNA_02141 0.37 +0.1
2,300,225 - CCNA_02141 0.48 +0.6
2,300,252 - CCNA_02141 0.52 +0.5
2,300,262 - CCNA_02141 0.54 +0.5
2,300,422 + CCNA_02141 0.80 +0.5
2,300,430 - CCNA_02141 0.81 -1.4
2,300,571 - -0.2
2,300,592 + -0.7
2,300,627 + +0.6
2,300,627 + +2.0
2,300,635 - -2.2
2,300,769 + +0.2
2,300,777 - -1.2
2,300,777 - +0.1
2,300,777 - +1.2
2,300,863 - CCNA_02142 0.12 -0.9
2,300,868 + CCNA_02142 0.13 -0.8
2,300,869 - CCNA_02142 0.13 +0.4
2,300,896 + CCNA_02142 0.17 -1.7
2,300,899 - CCNA_02142 0.17 -1.2
2,300,899 - CCNA_02142 0.17 -1.9

Or see this region's nucleotide sequence