Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02138 and CCNA_02139 overlap by 4 nucleotides CCNA_02139 and CCNA_02140 overlap by 4 nucleotides CCNA_02140 and CCNA_02141 are separated by 27 nucleotides CCNA_02141 and CCNA_02142 are separated by 226 nucleotides
CCNA_02138: CCNA_02138 - hypothetical protein, at 2,297,404 to 2,298,198
_02138
CCNA_02139: CCNA_02139 - polar flagellum positioning protein pflI, at 2,298,195 to 2,298,779
_02139
CCNA_02140: CCNA_02140 - flagellar motor switch protein fliM, at 2,298,776 to 2,299,900
_02140
CCNA_02141: CCNA_02141 - flagellar fliL protein, at 2,299,928 to 2,300,545
_02141
CCNA_02142: CCNA_02142 - flagellar basal-body rod protein flgF, at 2,300,772 to 2,301,509
_02142
Position (kb)
2298
2299
2300 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2297.980 kb on - strand, within CCNA_02138 at 2298.247 kb on + strand at 2298.263 kb on + strand, within CCNA_02139 at 2298.270 kb on - strand, within CCNA_02139 at 2298.310 kb on - strand, within CCNA_02139 at 2298.489 kb on - strand, within CCNA_02139 at 2298.489 kb on - strand, within CCNA_02139 at 2298.489 kb on - strand, within CCNA_02139 at 2298.489 kb on - strand, within CCNA_02139 at 2298.495 kb on - strand, within CCNA_02139 at 2298.495 kb on - strand, within CCNA_02139 at 2298.495 kb on - strand, within CCNA_02139 at 2298.525 kb on - strand, within CCNA_02139 at 2298.609 kb on + strand, within CCNA_02139 at 2298.657 kb on + strand, within CCNA_02139 at 2298.708 kb on - strand, within CCNA_02139 at 2298.822 kb on + strand at 2298.906 kb on - strand, within CCNA_02140 at 2298.928 kb on + strand, within CCNA_02140 at 2298.956 kb on - strand, within CCNA_02140 at 2298.956 kb on - strand, within CCNA_02140 at 2299.044 kb on + strand, within CCNA_02140 at 2299.052 kb on - strand, within CCNA_02140 at 2299.115 kb on - strand, within CCNA_02140 at 2299.233 kb on - strand, within CCNA_02140 at 2299.300 kb on - strand, within CCNA_02140 at 2299.341 kb on + strand, within CCNA_02140 at 2299.389 kb on + strand, within CCNA_02140 at 2299.467 kb on - strand, within CCNA_02140 at 2299.477 kb on - strand, within CCNA_02140 at 2299.484 kb on - strand, within CCNA_02140 at 2299.555 kb on - strand, within CCNA_02140 at 2299.566 kb on - strand, within CCNA_02140 at 2299.595 kb on - strand, within CCNA_02140 at 2299.643 kb on - strand, within CCNA_02140 at 2299.706 kb on - strand, within CCNA_02140 at 2299.706 kb on - strand, within CCNA_02140 at 2299.750 kb on - strand, within CCNA_02140 at 2299.827 kb on - strand at 2299.877 kb on - strand at 2299.926 kb on - strand at 2299.959 kb on + strand at 2299.959 kb on + strand at 2299.965 kb on + strand at 2299.965 kb on + strand at 2299.987 kb on + strand at 2299.990 kb on - strand, within CCNA_02141 at 2299.995 kb on - strand, within CCNA_02141 at 2300.025 kb on - strand, within CCNA_02141 at 2300.057 kb on - strand, within CCNA_02141 at 2300.073 kb on + strand, within CCNA_02141 at 2300.081 kb on - strand, within CCNA_02141 at 2300.081 kb on - strand, within CCNA_02141 at 2300.085 kb on - strand, within CCNA_02141 at 2300.155 kb on - strand, within CCNA_02141 at 2300.225 kb on - strand, within CCNA_02141 at 2300.252 kb on - strand, within CCNA_02141 at 2300.262 kb on - strand, within CCNA_02141 at 2300.422 kb on + strand, within CCNA_02141 at 2300.430 kb on - strand, within CCNA_02141 at 2300.571 kb on - strand at 2300.592 kb on + strand at 2300.627 kb on + strand at 2300.627 kb on + strand at 2300.635 kb on - strand at 2300.769 kb on + strand at 2300.777 kb on - strand at 2300.777 kb on - strand at 2300.777 kb on - strand at 2300.863 kb on - strand, within CCNA_02142 at 2300.868 kb on + strand, within CCNA_02142 at 2300.869 kb on - strand, within CCNA_02142 at 2300.896 kb on + strand, within CCNA_02142 at 2300.899 kb on - strand, within CCNA_02142 at 2300.899 kb on - strand, within CCNA_02142
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,297,980 - CCNA_02138 0.72 +0.4 2,298,247 + -0.4 2,298,263 + CCNA_02139 0.12 -0.6 2,298,270 - CCNA_02139 0.13 +0.1 2,298,310 - CCNA_02139 0.20 -0.5 2,298,489 - CCNA_02139 0.50 -0.1 2,298,489 - CCNA_02139 0.50 +0.5 2,298,489 - CCNA_02139 0.50 +0.0 2,298,489 - CCNA_02139 0.50 +0.2 2,298,495 - CCNA_02139 0.51 +0.2 2,298,495 - CCNA_02139 0.51 -0.8 2,298,495 - CCNA_02139 0.51 -0.0 2,298,525 - CCNA_02139 0.56 +0.9 2,298,609 + CCNA_02139 0.71 -0.1 2,298,657 + CCNA_02139 0.79 +0.2 2,298,708 - CCNA_02139 0.88 -0.0 2,298,822 + -0.1 2,298,906 - CCNA_02140 0.12 -0.9 2,298,928 + CCNA_02140 0.14 -0.8 2,298,956 - CCNA_02140 0.16 -1.5 2,298,956 - CCNA_02140 0.16 -0.2 2,299,044 + CCNA_02140 0.24 -0.4 2,299,052 - CCNA_02140 0.25 -1.6 2,299,115 - CCNA_02140 0.30 +0.2 2,299,233 - CCNA_02140 0.41 -0.1 2,299,300 - CCNA_02140 0.47 +1.1 2,299,341 + CCNA_02140 0.50 +0.2 2,299,389 + CCNA_02140 0.54 -1.5 2,299,467 - CCNA_02140 0.61 +0.1 2,299,477 - CCNA_02140 0.62 -0.1 2,299,484 - CCNA_02140 0.63 +0.2 2,299,555 - CCNA_02140 0.69 -1.2 2,299,566 - CCNA_02140 0.70 -0.4 2,299,595 - CCNA_02140 0.73 -0.4 2,299,643 - CCNA_02140 0.77 -0.3 2,299,706 - CCNA_02140 0.83 -0.0 2,299,706 - CCNA_02140 0.83 -1.3 2,299,750 - CCNA_02140 0.87 +0.5 2,299,827 - -0.9 2,299,877 - +0.6 2,299,926 - -0.1 2,299,959 + -0.5 2,299,959 + +0.9 2,299,965 + -1.5 2,299,965 + -1.4 2,299,987 + +0.5 2,299,990 - CCNA_02141 0.10 +0.6 2,299,995 - CCNA_02141 0.11 +1.3 2,300,025 - CCNA_02141 0.16 +0.7 2,300,057 - CCNA_02141 0.21 +0.1 2,300,073 + CCNA_02141 0.23 -1.1 2,300,081 - CCNA_02141 0.25 -2.5 2,300,081 - CCNA_02141 0.25 +0.4 2,300,085 - CCNA_02141 0.25 +0.9 2,300,155 - CCNA_02141 0.37 +0.1 2,300,225 - CCNA_02141 0.48 +0.6 2,300,252 - CCNA_02141 0.52 +0.5 2,300,262 - CCNA_02141 0.54 +0.5 2,300,422 + CCNA_02141 0.80 +0.5 2,300,430 - CCNA_02141 0.81 -1.4 2,300,571 - -0.2 2,300,592 + -0.7 2,300,627 + +0.6 2,300,627 + +2.0 2,300,635 - -2.2 2,300,769 + +0.2 2,300,777 - -1.2 2,300,777 - +0.1 2,300,777 - +1.2 2,300,863 - CCNA_02142 0.12 -0.9 2,300,868 + CCNA_02142 0.13 -0.8 2,300,869 - CCNA_02142 0.13 +0.4 2,300,896 + CCNA_02142 0.17 -1.7 2,300,899 - CCNA_02142 0.17 -1.2 2,300,899 - CCNA_02142 0.17 -1.9
Or see this region's nucleotide sequence