Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01971

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01970 and CCNA_01971 are separated by 139 nucleotidesCCNA_01971 and CCNA_01972 overlap by 1 nucleotides CCNA_01970: CCNA_01970 - triosephosphate isomerase, at 2,114,516 to 2,115,277 _01970 CCNA_01971: CCNA_01971 - peptidyl-prolyl cis-trans isomerase, at 2,115,417 to 2,117,381 _01971 CCNA_01972: CCNA_01972 - anthranilate synthase component I, at 2,117,381 to 2,118,922 _01972 Position (kb) 2115 2116 2117 2118Strain fitness (log2 ratio) -2 -1 0 1 2at 2114.423 kb on - strandat 2114.475 kb on - strandat 2114.492 kb on - strandat 2114.521 kb on - strandat 2115.285 kb on + strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.332 kb on - strandat 2115.349 kb on + strandat 2115.357 kb on - strandat 2115.361 kb on + strandat 2115.396 kb on + strandat 2115.396 kb on + strandat 2115.515 kb on + strandat 2115.562 kb on + strandat 2115.562 kb on + strandat 2115.654 kb on + strand, within CCNA_01971at 2115.720 kb on + strand, within CCNA_01971at 2116.010 kb on + strand, within CCNA_01971at 2116.203 kb on + strand, within CCNA_01971at 2116.229 kb on + strand, within CCNA_01971at 2116.229 kb on + strand, within CCNA_01971at 2116.487 kb on + strand, within CCNA_01971at 2116.760 kb on + strand, within CCNA_01971at 2116.864 kb on - strand, within CCNA_01971at 2117.132 kb on + strand, within CCNA_01971at 2117.204 kb on + strandat 2117.204 kb on + strandat 2117.276 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.347 kb on - strandat 2117.347 kb on - strandat 2117.347 kb on - strandat 2117.385 kb on + strandat 2117.399 kb on + strandat 2117.425 kb on - strandat 2117.425 kb on - strandat 2117.443 kb on + strandat 2117.444 kb on + strandat 2117.512 kb on + strandat 2117.520 kb on - strandat 2117.535 kb on - strandat 2117.567 kb on - strand, within CCNA_01972at 2117.678 kb on + strand, within CCNA_01972at 2117.725 kb on + strand, within CCNA_01972at 2117.726 kb on + strand, within CCNA_01972at 2117.733 kb on - strand, within CCNA_01972at 2117.822 kb on + strand, within CCNA_01972at 2117.823 kb on + strand, within CCNA_01972at 2117.823 kb on + strand, within CCNA_01972at 2117.823 kb on + strand, within CCNA_01972at 2117.823 kb on + strand, within CCNA_01972at 2117.831 kb on - strand, within CCNA_01972at 2117.831 kb on - strand, within CCNA_01972at 2117.843 kb on + strand, within CCNA_01972at 2117.870 kb on + strand, within CCNA_01972at 2117.872 kb on + strand, within CCNA_01972at 2117.888 kb on - strand, within CCNA_01972at 2117.976 kb on - strand, within CCNA_01972at 2117.987 kb on + strand, within CCNA_01972at 2117.987 kb on + strand, within CCNA_01972at 2118.006 kb on + strand, within CCNA_01972at 2118.098 kb on + strand, within CCNA_01972at 2118.105 kb on - strand, within CCNA_01972at 2118.120 kb on + strand, within CCNA_01972at 2118.155 kb on + strand, within CCNA_01972at 2118.155 kb on + strand, within CCNA_01972at 2118.163 kb on - strand, within CCNA_01972at 2118.189 kb on - strand, within CCNA_01972at 2118.240 kb on + strand, within CCNA_01972at 2118.248 kb on - strand, within CCNA_01972at 2118.255 kb on + strand, within CCNA_01972

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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2,114,423 - -0.1
2,114,475 - -0.7
2,114,492 - +0.3
2,114,521 - +0.3
2,115,285 + -0.3
2,115,309 - +0.2
2,115,309 - +0.5
2,115,309 - +1.1
2,115,332 - +0.6
2,115,349 + +0.4
2,115,357 - -0.4
2,115,361 + +0.5
2,115,396 + -0.4
2,115,396 + +0.2
2,115,515 + +1.3
2,115,562 + -0.8
2,115,562 + +1.3
2,115,654 + CCNA_01971 0.12 -0.5
2,115,720 + CCNA_01971 0.15 -0.2
2,116,010 + CCNA_01971 0.30 -1.4
2,116,203 + CCNA_01971 0.40 +0.3
2,116,229 + CCNA_01971 0.41 +1.2
2,116,229 + CCNA_01971 0.41 +0.3
2,116,487 + CCNA_01971 0.54 +1.3
2,116,760 + CCNA_01971 0.68 +0.5
2,116,864 - CCNA_01971 0.74 -1.4
2,117,132 + CCNA_01971 0.87 +2.2
2,117,204 + +0.7
2,117,204 + -0.1
2,117,276 + +1.4
2,117,339 + +0.5
2,117,339 + +0.2
2,117,339 + +0.1
2,117,339 + +0.3
2,117,339 + -0.2
2,117,347 - -1.4
2,117,347 - -0.3
2,117,347 - -1.8
2,117,385 + -0.8
2,117,399 + +0.5
2,117,425 - -0.4
2,117,425 - -0.4
2,117,443 + +0.4
2,117,444 + -0.1
2,117,512 + +0.4
2,117,520 - -1.7
2,117,535 - +0.7
2,117,567 - CCNA_01972 0.12 -1.4
2,117,678 + CCNA_01972 0.19 +1.5
2,117,725 + CCNA_01972 0.22 -0.4
2,117,726 + CCNA_01972 0.22 +0.1
2,117,733 - CCNA_01972 0.23 -0.1
2,117,822 + CCNA_01972 0.29 +1.1
2,117,823 + CCNA_01972 0.29 +0.5
2,117,823 + CCNA_01972 0.29 +0.5
2,117,823 + CCNA_01972 0.29 +0.9
2,117,823 + CCNA_01972 0.29 +0.8
2,117,831 - CCNA_01972 0.29 -0.4
2,117,831 - CCNA_01972 0.29 +1.1
2,117,843 + CCNA_01972 0.30 -0.9
2,117,870 + CCNA_01972 0.32 -0.1
2,117,872 + CCNA_01972 0.32 +0.3
2,117,888 - CCNA_01972 0.33 -0.6
2,117,976 - CCNA_01972 0.39 -0.0
2,117,987 + CCNA_01972 0.39 +0.1
2,117,987 + CCNA_01972 0.39 +0.2
2,118,006 + CCNA_01972 0.41 -0.0
2,118,098 + CCNA_01972 0.46 -0.8
2,118,105 - CCNA_01972 0.47 +0.3
2,118,120 + CCNA_01972 0.48 +0.6
2,118,155 + CCNA_01972 0.50 +1.3
2,118,155 + CCNA_01972 0.50 +0.5
2,118,163 - CCNA_01972 0.51 +0.2
2,118,189 - CCNA_01972 0.52 +1.1
2,118,240 + CCNA_01972 0.56 +0.3
2,118,248 - CCNA_01972 0.56 -1.5
2,118,255 + CCNA_01972 0.57 +0.6

Or see this region's nucleotide sequence