Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01802

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01800 and CCNA_01801 are separated by 5 nucleotidesCCNA_01801 and CCNA_01802 overlap by 4 nucleotidesCCNA_01802 and CCNA_01803 are separated by 12 nucleotides CCNA_01800: CCNA_01800 - pyruvate dehydrogenase E1 component beta subunit, at 1,924,985 to 1,926,337 _01800 CCNA_01801: CCNA_01801 - hypothetical protein, at 1,926,343 to 1,926,795 _01801 CCNA_01802: CCNA_01802 - hypothetical protein, at 1,926,792 to 1,926,908 _01802 CCNA_01803: CCNA_01803 - pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase component, at 1,926,921 to 1,928,207 _01803 Position (kb) 1926 1927Strain fitness (log2 ratio) -1 0 1at 1925.912 kb on + strand, within CCNA_01800at 1925.961 kb on + strand, within CCNA_01800at 1926.327 kb on + strandat 1926.443 kb on - strand, within CCNA_01801at 1926.631 kb on + strand, within CCNA_01801at 1926.631 kb on + strand, within CCNA_01801at 1926.631 kb on + strand, within CCNA_01801at 1926.656 kb on + strand, within CCNA_01801at 1926.702 kb on - strand, within CCNA_01801at 1926.704 kb on + strand, within CCNA_01801at 1926.725 kb on + strand, within CCNA_01801at 1926.733 kb on - strand, within CCNA_01801at 1926.746 kb on + strand, within CCNA_01801at 1926.746 kb on - strand, within CCNA_01801at 1926.784 kb on - strandat 1926.801 kb on + strandat 1926.809 kb on - strand, within CCNA_01802at 1926.916 kb on + strandat 1927.872 kb on + strand, within CCNA_01803at 1927.897 kb on + strand, within CCNA_01803

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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1,925,912 + CCNA_01800 0.69 -0.5
1,925,961 + CCNA_01800 0.72 +0.1
1,926,327 + +0.4
1,926,443 - CCNA_01801 0.22 -0.8
1,926,631 + CCNA_01801 0.64 +0.6
1,926,631 + CCNA_01801 0.64 +0.3
1,926,631 + CCNA_01801 0.64 +0.4
1,926,656 + CCNA_01801 0.69 +0.2
1,926,702 - CCNA_01801 0.79 -0.6
1,926,704 + CCNA_01801 0.80 +0.8
1,926,725 + CCNA_01801 0.84 +0.7
1,926,733 - CCNA_01801 0.86 +0.7
1,926,746 + CCNA_01801 0.89 +0.7
1,926,746 - CCNA_01801 0.89 -1.3
1,926,784 - -0.1
1,926,801 + +1.3
1,926,809 - CCNA_01802 0.15 -0.8
1,926,916 + -0.6
1,927,872 + CCNA_01803 0.74 -0.6
1,927,897 + CCNA_01803 0.76 +0.4

Or see this region's nucleotide sequence