Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01783 and CCNA_01784 are separated by 176 nucleotides CCNA_01784 and CCNA_01785 overlap by 134 nucleotides CCNA_01785 and CCNA_01786 are separated by 898 nucleotides
CCNA_01783: CCNA_01783 - chromosome replication regulator protein HdaA, at 1,911,358 to 1,912,050
_01783
CCNA_01784: CCNA_01784 - hypothetical protein, at 1,912,227 to 1,912,619
_01784
CCNA_01785: CCNA_01785 - hypothetical protein, at 1,912,486 to 1,913,097
_01785
CCNA_01786: CCNA_01786 - EcsC family protein, at 1,913,996 to 1,914,736
_01786
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1912.084 kb on + strand at 1912.092 kb on - strand at 1912.092 kb on - strand at 1912.117 kb on + strand at 1912.165 kb on + strand at 1912.182 kb on + strand at 1912.252 kb on + strand at 1912.260 kb on - strand at 1912.299 kb on + strand, within CCNA_01784 at 1912.307 kb on - strand, within CCNA_01784 at 1912.372 kb on + strand, within CCNA_01784 at 1912.372 kb on + strand, within CCNA_01784 at 1912.380 kb on - strand, within CCNA_01784 at 1912.380 kb on - strand, within CCNA_01784 at 1912.399 kb on - strand, within CCNA_01784 at 1912.638 kb on - strand, within CCNA_01785 at 1912.725 kb on + strand, within CCNA_01785 at 1912.733 kb on - strand, within CCNA_01785 at 1912.733 kb on - strand, within CCNA_01785 at 1912.735 kb on - strand, within CCNA_01785 at 1912.738 kb on + strand, within CCNA_01785 at 1912.738 kb on + strand, within CCNA_01785 at 1912.743 kb on + strand, within CCNA_01785 at 1912.801 kb on - strand, within CCNA_01785 at 1912.846 kb on - strand, within CCNA_01785 at 1912.859 kb on - strand, within CCNA_01785 at 1912.864 kb on - strand, within CCNA_01785 at 1912.894 kb on + strand, within CCNA_01785 at 1912.984 kb on + strand, within CCNA_01785 at 1912.985 kb on + strand, within CCNA_01785 at 1913.006 kb on - strand, within CCNA_01785 at 1913.079 kb on + strand at 1913.079 kb on + strand at 1913.087 kb on - strand at 1913.087 kb on - strand at 1913.181 kb on - strand at 1913.205 kb on + strand at 1913.215 kb on + strand at 1913.230 kb on + strand at 1913.230 kb on + strand at 1913.230 kb on + strand at 1913.238 kb on - strand at 1913.238 kb on - strand at 1913.243 kb on - strand at 1913.248 kb on - strand at 1913.306 kb on - strand at 1913.306 kb on - strand at 1913.316 kb on - strand at 1913.318 kb on + strand at 1913.326 kb on - strand at 1913.357 kb on + strand at 1913.364 kb on - strand at 1913.374 kb on + strand at 1913.374 kb on + strand at 1913.382 kb on - strand at 1913.382 kb on - strand at 1913.382 kb on - strand at 1913.383 kb on - strand at 1913.389 kb on + strand at 1913.401 kb on + strand at 1913.401 kb on + strand at 1913.424 kb on + strand at 1913.442 kb on - strand at 1913.453 kb on + strand at 1913.461 kb on - strand at 1913.463 kb on - strand at 1913.518 kb on + strand at 1913.524 kb on + strand at 1913.525 kb on - strand at 1913.530 kb on + strand at 1913.532 kb on - strand at 1913.549 kb on + strand at 1913.549 kb on + strand at 1913.549 kb on + strand at 1913.550 kb on - strand at 1913.554 kb on + strand at 1913.597 kb on + strand at 1913.597 kb on + strand at 1913.606 kb on + strand at 1913.615 kb on - strand at 1913.617 kb on + strand at 1913.625 kb on - strand at 1913.625 kb on - strand at 1913.640 kb on - strand at 1913.659 kb on - strand at 1913.743 kb on + strand at 1913.747 kb on - strand at 1913.771 kb on - strand at 1913.771 kb on - strand at 1913.797 kb on + strand at 1913.797 kb on + strand at 1913.797 kb on + strand at 1913.805 kb on - strand at 1913.805 kb on - strand at 1913.805 kb on - strand at 1913.814 kb on + strand at 1913.827 kb on - strand at 1913.919 kb on + strand at 1913.922 kb on - strand at 1913.927 kb on - strand at 1913.929 kb on + strand at 1913.929 kb on + strand at 1913.988 kb on - strand at 1913.988 kb on - strand at 1913.992 kb on + strand at 1914.022 kb on - strand at 1914.027 kb on - strand at 1914.037 kb on + strand at 1914.077 kb on + strand, within CCNA_01786 at 1914.077 kb on + strand, within CCNA_01786 at 1914.082 kb on + strand, within CCNA_01786 at 1914.096 kb on + strand, within CCNA_01786
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 1,912,084 + -0.1 1,912,092 - -0.7 1,912,092 - +0.3 1,912,117 + -1.2 1,912,165 + +2.2 1,912,182 + +0.7 1,912,252 + +0.2 1,912,260 - -1.3 1,912,299 + CCNA_01784 0.18 -2.3 1,912,307 - CCNA_01784 0.20 +0.4 1,912,372 + CCNA_01784 0.37 -0.7 1,912,372 + CCNA_01784 0.37 +0.4 1,912,380 - CCNA_01784 0.39 +0.9 1,912,380 - CCNA_01784 0.39 -0.8 1,912,399 - CCNA_01784 0.44 -1.7 1,912,638 - CCNA_01785 0.25 -0.5 1,912,725 + CCNA_01785 0.39 -1.1 1,912,733 - CCNA_01785 0.40 -1.1 1,912,733 - CCNA_01785 0.40 -0.9 1,912,735 - CCNA_01785 0.41 -0.7 1,912,738 + CCNA_01785 0.41 -1.9 1,912,738 + CCNA_01785 0.41 -0.5 1,912,743 + CCNA_01785 0.42 -1.2 1,912,801 - CCNA_01785 0.51 +0.3 1,912,846 - CCNA_01785 0.59 +0.4 1,912,859 - CCNA_01785 0.61 -0.5 1,912,864 - CCNA_01785 0.62 +0.2 1,912,894 + CCNA_01785 0.67 -1.1 1,912,984 + CCNA_01785 0.81 -1.7 1,912,985 + CCNA_01785 0.82 -0.4 1,913,006 - CCNA_01785 0.85 -0.9 1,913,079 + +0.3 1,913,079 + -1.2 1,913,087 - +0.4 1,913,087 - +0.8 1,913,181 - -1.8 1,913,205 + -0.3 1,913,215 + +0.1 1,913,230 + +0.5 1,913,230 + -0.2 1,913,230 + -0.3 1,913,238 - -0.5 1,913,238 - +0.1 1,913,243 - +0.2 1,913,248 - +0.8 1,913,306 - -0.5 1,913,306 - -0.1 1,913,316 - +0.7 1,913,318 + +0.3 1,913,326 - -0.6 1,913,357 + -0.2 1,913,364 - -0.4 1,913,374 + -0.1 1,913,374 + +0.9 1,913,382 - -0.7 1,913,382 - -0.2 1,913,382 - +0.1 1,913,383 - -0.9 1,913,389 + +0.1 1,913,401 + +0.6 1,913,401 + +0.8 1,913,424 + +0.5 1,913,442 - +0.5 1,913,453 + +1.1 1,913,461 - +0.4 1,913,463 - -2.3 1,913,518 + +0.5 1,913,524 + +0.8 1,913,525 - -0.6 1,913,530 + +1.0 1,913,532 - -1.3 1,913,549 + +0.2 1,913,549 + +0.1 1,913,549 + -0.9 1,913,550 - +0.1 1,913,554 + +0.7 1,913,597 + +0.0 1,913,597 + -0.3 1,913,606 + +0.0 1,913,615 - +0.2 1,913,617 + +0.4 1,913,625 - -0.1 1,913,625 - -0.5 1,913,640 - +2.4 1,913,659 - -1.1 1,913,743 + -0.1 1,913,747 - -1.1 1,913,771 - +0.1 1,913,771 - -0.5 1,913,797 + -1.5 1,913,797 + -1.0 1,913,797 + -0.3 1,913,805 - +0.1 1,913,805 - -1.1 1,913,805 - -0.2 1,913,814 + -0.8 1,913,827 - -0.1 1,913,919 + -1.3 1,913,922 - +0.5 1,913,927 - +0.6 1,913,929 + -1.9 1,913,929 + -0.1 1,913,988 - -0.2 1,913,988 - -0.8 1,913,992 + -0.9 1,914,022 - +0.8 1,914,027 - +1.3 1,914,037 + -0.6 1,914,077 + CCNA_01786 0.11 +0.4 1,914,077 + CCNA_01786 0.11 +0.3 1,914,082 + CCNA_01786 0.12 +1.7 1,914,096 + CCNA_01786 0.13 -0.5
Or see this region's nucleotide sequence