Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01775 and CCNA_01776 are separated by 125 nucleotides CCNA_01776 and CCNA_01777 are separated by 249 nucleotides
CCNA_01775: CCNA_01775 - phosphoribosylformylglycinamidine cyclo-ligase, at 1,900,847 to 1,901,872
_01775
CCNA_01776: CCNA_01776 - ribonuclease D, at 1,901,998 to 1,903,167
_01776
CCNA_01777: CCNA_01777 - hybrid sensor histidine kinase/receiver domain protein, at 1,903,417 to 1,905,099
_01777
Position (kb)
1901
1902
1903
1904 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1901.000 kb on + strand, within CCNA_01775 at 1901.013 kb on - strand, within CCNA_01775 at 1901.023 kb on - strand, within CCNA_01775 at 1901.122 kb on - strand, within CCNA_01775 at 1901.235 kb on - strand, within CCNA_01775 at 1901.251 kb on - strand, within CCNA_01775 at 1901.349 kb on + strand, within CCNA_01775 at 1901.453 kb on + strand, within CCNA_01775 at 1901.504 kb on + strand, within CCNA_01775 at 1901.504 kb on + strand, within CCNA_01775 at 1901.577 kb on + strand, within CCNA_01775 at 1901.608 kb on + strand, within CCNA_01775 at 1901.627 kb on - strand, within CCNA_01775 at 1901.736 kb on - strand, within CCNA_01775 at 1901.739 kb on - strand, within CCNA_01775 at 1901.775 kb on + strand at 1901.775 kb on + strand at 1901.800 kb on + strand at 1901.879 kb on + strand at 1901.892 kb on - strand at 1901.896 kb on + strand at 1901.897 kb on - strand at 1901.908 kb on + strand at 1901.949 kb on - strand at 1901.952 kb on + strand at 1901.959 kb on - strand at 1901.996 kb on + strand at 1902.857 kb on + strand, within CCNA_01776 at 1903.132 kb on - strand at 1903.244 kb on - strand at 1903.343 kb on + strand at 1903.374 kb on - strand at 1903.381 kb on - strand at 1903.421 kb on + strand at 1903.426 kb on + strand at 1903.517 kb on + strand at 1903.517 kb on + strand at 1903.525 kb on - strand at 1903.527 kb on + strand at 1903.535 kb on - strand at 1903.545 kb on - strand at 1903.594 kb on + strand, within CCNA_01777 at 1903.602 kb on - strand, within CCNA_01777 at 1903.602 kb on - strand, within CCNA_01777 at 1903.602 kb on - strand, within CCNA_01777 at 1903.608 kb on + strand, within CCNA_01777 at 1903.645 kb on - strand, within CCNA_01777 at 1903.759 kb on + strand, within CCNA_01777 at 1903.772 kb on - strand, within CCNA_01777 at 1903.774 kb on + strand, within CCNA_01777 at 1903.789 kb on + strand, within CCNA_01777 at 1903.811 kb on + strand, within CCNA_01777 at 1903.819 kb on + strand, within CCNA_01777 at 1903.933 kb on + strand, within CCNA_01777 at 1903.938 kb on + strand, within CCNA_01777 at 1903.953 kb on - strand, within CCNA_01777 at 1904.032 kb on + strand, within CCNA_01777 at 1904.059 kb on - strand, within CCNA_01777 at 1904.114 kb on + strand, within CCNA_01777 at 1904.122 kb on - strand, within CCNA_01777 at 1904.137 kb on + strand, within CCNA_01777 at 1904.165 kb on - strand, within CCNA_01777
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 1,901,000 + CCNA_01775 0.15 +1.0 1,901,013 - CCNA_01775 0.16 -0.0 1,901,023 - CCNA_01775 0.17 +0.3 1,901,122 - CCNA_01775 0.27 -0.1 1,901,235 - CCNA_01775 0.38 +1.3 1,901,251 - CCNA_01775 0.39 -0.3 1,901,349 + CCNA_01775 0.49 -0.1 1,901,453 + CCNA_01775 0.59 -1.9 1,901,504 + CCNA_01775 0.64 +0.2 1,901,504 + CCNA_01775 0.64 -1.8 1,901,577 + CCNA_01775 0.71 -0.1 1,901,608 + CCNA_01775 0.74 -0.1 1,901,627 - CCNA_01775 0.76 -0.9 1,901,736 - CCNA_01775 0.87 +0.7 1,901,739 - CCNA_01775 0.87 -0.1 1,901,775 + +0.7 1,901,775 + -0.5 1,901,800 + -1.5 1,901,879 + -2.7 1,901,892 - +0.1 1,901,896 + -1.0 1,901,897 - +0.0 1,901,908 + -1.0 1,901,949 - +1.1 1,901,952 + -1.5 1,901,959 - +1.1 1,901,996 + +0.6 1,902,857 + CCNA_01776 0.73 -0.4 1,903,132 - +0.4 1,903,244 - -0.6 1,903,343 + +0.4 1,903,374 - -2.8 1,903,381 - +1.7 1,903,421 + +0.5 1,903,426 + +0.7 1,903,517 + +1.5 1,903,517 + +1.3 1,903,525 - -0.5 1,903,527 + +0.8 1,903,535 - -1.9 1,903,545 - -1.4 1,903,594 + CCNA_01777 0.11 -0.3 1,903,602 - CCNA_01777 0.11 -1.0 1,903,602 - CCNA_01777 0.11 -1.3 1,903,602 - CCNA_01777 0.11 -0.9 1,903,608 + CCNA_01777 0.11 -0.5 1,903,645 - CCNA_01777 0.14 +0.5 1,903,759 + CCNA_01777 0.20 +0.6 1,903,772 - CCNA_01777 0.21 -1.3 1,903,774 + CCNA_01777 0.21 +0.7 1,903,789 + CCNA_01777 0.22 +1.0 1,903,811 + CCNA_01777 0.23 +2.4 1,903,819 + CCNA_01777 0.24 +1.0 1,903,933 + CCNA_01777 0.31 +0.3 1,903,938 + CCNA_01777 0.31 +0.5 1,903,953 - CCNA_01777 0.32 -2.5 1,904,032 + CCNA_01777 0.37 -0.2 1,904,059 - CCNA_01777 0.38 -0.4 1,904,114 + CCNA_01777 0.41 +0.4 1,904,122 - CCNA_01777 0.42 +0.4 1,904,137 + CCNA_01777 0.43 +0.1 1,904,165 - CCNA_01777 0.44 -0.2
Or see this region's nucleotide sequence