Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01738 and CCNA_01739 are separated by 204 nucleotides CCNA_01739 and CCNA_01740 are separated by 13 nucleotides CCNA_01740 and CCNA_01741 are separated by 14 nucleotides CCNA_01741 and CCNA_01742 are separated by 268 nucleotides
CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063
_01738
CCNA_01739: CCNA_01739 - LSU ribosomal protein L9P, at 1,869,268 to 1,869,852
_01739
CCNA_01740: CCNA_01740 - SSU ribosomal protein S18P, at 1,869,866 to 1,870,144
_01740
CCNA_01741: CCNA_01741 - SSU ribosomal protein S6P, at 1,870,159 to 1,870,539
_01741
CCNA_01742: CCNA_01742 - hypothetical protein, at 1,870,808 to 1,871,467
_01742
Position (kb)
1869
1870 Strain fitness (log2 ratio)
-2
-1
0
1 at 1868.275 kb on - strand, within CCNA_01738 at 1868.301 kb on + strand, within CCNA_01738 at 1868.303 kb on - strand, within CCNA_01738 at 1868.414 kb on + strand, within CCNA_01738 at 1868.427 kb on - strand, within CCNA_01738 at 1868.497 kb on - strand, within CCNA_01738 at 1868.552 kb on - strand, within CCNA_01738 at 1868.571 kb on + strand, within CCNA_01738 at 1868.571 kb on + strand, within CCNA_01738 at 1868.578 kb on + strand, within CCNA_01738 at 1868.620 kb on + strand, within CCNA_01738 at 1868.632 kb on + strand, within CCNA_01738 at 1868.687 kb on + strand, within CCNA_01738 at 1868.692 kb on + strand, within CCNA_01738 at 1868.692 kb on + strand, within CCNA_01738 at 1868.692 kb on + strand, within CCNA_01738 at 1868.700 kb on - strand, within CCNA_01738 at 1868.707 kb on - strand, within CCNA_01738 at 1868.728 kb on - strand, within CCNA_01738 at 1868.728 kb on - strand, within CCNA_01738 at 1868.728 kb on - strand, within CCNA_01738 at 1868.758 kb on + strand, within CCNA_01738 at 1868.776 kb on + strand, within CCNA_01738 at 1868.841 kb on - strand at 1868.847 kb on + strand at 1868.853 kb on + strand at 1868.872 kb on + strand at 1868.875 kb on - strand at 1868.880 kb on + strand at 1868.880 kb on - strand at 1868.880 kb on - strand at 1868.903 kb on - strand at 1868.904 kb on + strand at 1868.922 kb on - strand at 1868.950 kb on + strand at 1868.979 kb on - strand at 1869.000 kb on - strand at 1869.001 kb on - strand at 1869.012 kb on - strand at 1869.017 kb on + strand at 1869.050 kb on + strand at 1869.064 kb on + strand at 1869.065 kb on + strand at 1869.072 kb on - strand at 1869.113 kb on + strand at 1869.121 kb on - strand at 1869.126 kb on - strand at 1869.190 kb on + strand at 1869.265 kb on + strand at 1869.265 kb on + strand at 1869.265 kb on + strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.319 kb on + strand at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.409 kb on - strand, within CCNA_01739 at 1869.437 kb on - strand, within CCNA_01739 at 1869.603 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.678 kb on - strand, within CCNA_01739 at 1869.739 kb on - strand, within CCNA_01739 at 1869.748 kb on - strand, within CCNA_01739 at 1869.760 kb on - strand, within CCNA_01739 at 1870.749 kb on + strand at 1870.757 kb on - strand at 1870.757 kb on - strand at 1870.778 kb on + strand at 1870.778 kb on + strand at 1870.778 kb on + strand at 1870.825 kb on + strand at 1870.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 1,868,275 - CCNA_01738 0.68 +0.3 1,868,301 + CCNA_01738 0.69 +0.0 1,868,303 - CCNA_01738 0.69 +1.0 1,868,414 + CCNA_01738 0.73 +0.0 1,868,427 - CCNA_01738 0.74 -0.2 1,868,497 - CCNA_01738 0.77 -0.5 1,868,552 - CCNA_01738 0.79 +0.2 1,868,571 + CCNA_01738 0.80 +0.4 1,868,571 + CCNA_01738 0.80 -0.4 1,868,578 + CCNA_01738 0.80 +0.4 1,868,620 + CCNA_01738 0.82 -0.4 1,868,632 + CCNA_01738 0.82 -0.9 1,868,687 + CCNA_01738 0.84 -0.9 1,868,692 + CCNA_01738 0.85 +0.2 1,868,692 + CCNA_01738 0.85 +0.2 1,868,692 + CCNA_01738 0.85 +0.5 1,868,700 - CCNA_01738 0.85 +1.1 1,868,707 - CCNA_01738 0.85 +0.2 1,868,728 - CCNA_01738 0.86 -0.3 1,868,728 - CCNA_01738 0.86 +0.7 1,868,728 - CCNA_01738 0.86 +0.5 1,868,758 + CCNA_01738 0.87 +0.6 1,868,776 + CCNA_01738 0.88 +0.2 1,868,841 - +0.4 1,868,847 + -0.2 1,868,853 + -0.2 1,868,872 + -0.5 1,868,875 - +1.1 1,868,880 + -0.5 1,868,880 - +0.1 1,868,880 - +0.1 1,868,903 - +0.1 1,868,904 + -0.2 1,868,922 - +0.5 1,868,950 + -0.5 1,868,979 - +0.2 1,869,000 - +1.0 1,869,001 - -0.7 1,869,012 - -0.4 1,869,017 + -0.3 1,869,050 + -0.6 1,869,064 + -0.8 1,869,065 + -0.3 1,869,072 - -0.1 1,869,113 + +0.2 1,869,121 - +0.3 1,869,126 - -0.1 1,869,190 + -0.3 1,869,265 + +1.2 1,869,265 + +0.7 1,869,265 + +0.6 1,869,273 - -0.0 1,869,273 - +0.2 1,869,273 - +0.4 1,869,319 + -0.4 1,869,327 - CCNA_01739 0.10 -0.3 1,869,327 - CCNA_01739 0.10 -0.4 1,869,327 - CCNA_01739 0.10 +0.2 1,869,327 - CCNA_01739 0.10 -0.5 1,869,327 - CCNA_01739 0.10 +0.1 1,869,409 - CCNA_01739 0.24 -0.6 1,869,437 - CCNA_01739 0.29 +0.1 1,869,603 - CCNA_01739 0.57 +0.6 1,869,642 - CCNA_01739 0.64 +0.2 1,869,678 - CCNA_01739 0.70 -1.8 1,869,739 - CCNA_01739 0.81 +0.1 1,869,748 - CCNA_01739 0.82 -1.0 1,869,760 - CCNA_01739 0.84 -0.1 1,870,749 + +0.5 1,870,757 - -0.3 1,870,757 - +0.4 1,870,778 + +0.4 1,870,778 + +0.1 1,870,778 + +0.3 1,870,825 + +0.2 1,870,826 - -0.3
Or see this region's nucleotide sequence