Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01497

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01495 and CCNA_01496 are separated by 61 nucleotidesCCNA_01496 and CCNA_01497 are separated by 2 nucleotidesCCNA_01497 and CCNA_01498 are separated by 101 nucleotides CCNA_01495: CCNA_01495 - deoxyribodipyrimidine photolyase, at 1,604,575 to 1,606,026 _01495 CCNA_01496: CCNA_01496 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,606,088 to 1,606,951 _01496 CCNA_01497: CCNA_01497 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,606,954 to 1,607,955 _01497 CCNA_01498: CCNA_01498 - 3-hydroxy-3-methylglutaryl CoA synthase, at 1,608,057 to 1,609,523 _01498 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1605.957 kb on - strandat 1605.957 kb on - strandat 1606.007 kb on + strandat 1606.026 kb on - strandat 1606.026 kb on - strandat 1606.042 kb on - strandat 1606.046 kb on + strandat 1606.046 kb on + strandat 1606.046 kb on + strandat 1606.046 kb on + strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.054 kb on - strandat 1606.072 kb on - strandat 1606.084 kb on - strandat 1606.096 kb on + strandat 1606.096 kb on + strandat 1606.096 kb on + strandat 1606.104 kb on - strandat 1606.104 kb on - strandat 1606.208 kb on - strand, within CCNA_01496at 1606.282 kb on - strand, within CCNA_01496at 1606.288 kb on - strand, within CCNA_01496at 1606.876 kb on - strandat 1606.936 kb on + strandat 1606.936 kb on + strandat 1606.936 kb on + strandat 1606.936 kb on + strandat 1606.977 kb on - strandat 1606.977 kb on - strandat 1606.985 kb on + strandat 1607.032 kb on - strandat 1607.040 kb on + strandat 1607.134 kb on - strand, within CCNA_01497at 1607.182 kb on + strand, within CCNA_01497at 1607.197 kb on + strand, within CCNA_01497at 1607.228 kb on + strand, within CCNA_01497at 1607.238 kb on + strand, within CCNA_01497at 1607.238 kb on + strand, within CCNA_01497at 1607.238 kb on + strand, within CCNA_01497at 1607.246 kb on - strand, within CCNA_01497at 1607.246 kb on - strand, within CCNA_01497at 1607.295 kb on - strand, within CCNA_01497at 1607.298 kb on + strand, within CCNA_01497at 1607.307 kb on - strand, within CCNA_01497at 1607.406 kb on + strand, within CCNA_01497at 1607.406 kb on + strand, within CCNA_01497at 1607.406 kb on + strand, within CCNA_01497at 1607.414 kb on - strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.432 kb on - strand, within CCNA_01497at 1607.432 kb on - strand, within CCNA_01497at 1607.542 kb on + strand, within CCNA_01497at 1607.542 kb on + strand, within CCNA_01497at 1607.542 kb on + strand, within CCNA_01497at 1607.550 kb on - strand, within CCNA_01497at 1607.550 kb on - strand, within CCNA_01497at 1607.555 kb on - strand, within CCNA_01497at 1607.690 kb on - strand, within CCNA_01497at 1607.714 kb on + strand, within CCNA_01497at 1607.783 kb on + strand, within CCNA_01497at 1607.789 kb on + strand, within CCNA_01497at 1607.866 kb on + strandat 1607.923 kb on - strandat 1608.032 kb on - strandat 1608.125 kb on + strandat 1608.126 kb on + strandat 1608.139 kb on - strandat 1608.149 kb on + strandat 1608.155 kb on + strandat 1608.161 kb on + strandat 1608.161 kb on + strandat 1608.161 kb on + strandat 1608.163 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.176 kb on + strandat 1608.176 kb on + strandat 1608.184 kb on - strandat 1608.184 kb on - strandat 1608.201 kb on + strandat 1608.206 kb on + strand, within CCNA_01498at 1608.206 kb on + strand, within CCNA_01498at 1608.209 kb on - strand, within CCNA_01498at 1608.269 kb on - strand, within CCNA_01498at 1608.273 kb on - strand, within CCNA_01498at 1608.319 kb on + strand, within CCNA_01498at 1608.351 kb on - strand, within CCNA_01498at 1608.394 kb on - strand, within CCNA_01498at 1608.410 kb on - strand, within CCNA_01498at 1608.425 kb on + strand, within CCNA_01498at 1608.425 kb on + strand, within CCNA_01498at 1608.532 kb on + strand, within CCNA_01498at 1608.565 kb on - strand, within CCNA_01498at 1608.590 kb on + strand, within CCNA_01498at 1608.598 kb on - strand, within CCNA_01498at 1608.609 kb on + strand, within CCNA_01498at 1608.613 kb on - strand, within CCNA_01498at 1608.622 kb on + strand, within CCNA_01498at 1608.720 kb on - strand, within CCNA_01498at 1608.767 kb on - strand, within CCNA_01498at 1608.798 kb on - strand, within CCNA_01498at 1608.805 kb on + strand, within CCNA_01498at 1608.853 kb on + strand, within CCNA_01498at 1608.871 kb on + strand, within CCNA_01498at 1608.881 kb on + strand, within CCNA_01498at 1608.881 kb on + strand, within CCNA_01498at 1608.889 kb on - strand, within CCNA_01498at 1608.889 kb on - strand, within CCNA_01498at 1608.889 kb on - strand, within CCNA_01498at 1608.889 kb on - strand, within CCNA_01498at 1608.932 kb on + strand, within CCNA_01498at 1608.932 kb on - strand, within CCNA_01498at 1608.933 kb on + strand, within CCNA_01498

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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1,605,957 - -0.6
1,605,957 - -0.6
1,606,007 + -0.0
1,606,026 - -1.6
1,606,026 - -2.4
1,606,042 - -0.3
1,606,046 + +1.9
1,606,046 + +1.4
1,606,046 + -0.7
1,606,046 + -0.2
1,606,054 - +0.1
1,606,054 - -1.1
1,606,054 - -0.9
1,606,054 - -1.5
1,606,054 - -1.3
1,606,054 - -0.3
1,606,054 - -0.1
1,606,054 - -3.2
1,606,054 - -0.1
1,606,072 - -0.8
1,606,084 - -0.4
1,606,096 + -0.5
1,606,096 + +0.1
1,606,096 + +0.2
1,606,104 - -1.5
1,606,104 - +0.3
1,606,208 - CCNA_01496 0.14 -1.1
1,606,282 - CCNA_01496 0.22 -1.0
1,606,288 - CCNA_01496 0.23 +0.1
1,606,876 - -0.1
1,606,936 + +0.5
1,606,936 + -0.8
1,606,936 + +0.2
1,606,936 + +0.5
1,606,977 - -2.3
1,606,977 - -2.0
1,606,985 + +0.1
1,607,032 - -0.3
1,607,040 + +0.5
1,607,134 - CCNA_01497 0.18 +0.4
1,607,182 + CCNA_01497 0.23 +0.0
1,607,197 + CCNA_01497 0.24 +0.5
1,607,228 + CCNA_01497 0.27 -0.5
1,607,238 + CCNA_01497 0.28 +0.3
1,607,238 + CCNA_01497 0.28 +1.3
1,607,238 + CCNA_01497 0.28 -0.7
1,607,246 - CCNA_01497 0.29 -1.0
1,607,246 - CCNA_01497 0.29 +0.7
1,607,295 - CCNA_01497 0.34 -0.9
1,607,298 + CCNA_01497 0.34 +0.1
1,607,307 - CCNA_01497 0.35 -0.6
1,607,406 + CCNA_01497 0.45 -0.1
1,607,406 + CCNA_01497 0.45 -0.1
1,607,406 + CCNA_01497 0.45 +0.1
1,607,414 - CCNA_01497 0.46 -0.4
1,607,424 + CCNA_01497 0.47 -0.4
1,607,424 + CCNA_01497 0.47 -0.2
1,607,432 - CCNA_01497 0.48 -0.6
1,607,432 - CCNA_01497 0.48 +0.1
1,607,542 + CCNA_01497 0.59 -0.9
1,607,542 + CCNA_01497 0.59 -1.4
1,607,542 + CCNA_01497 0.59 +0.3
1,607,550 - CCNA_01497 0.59 +0.7
1,607,550 - CCNA_01497 0.59 -0.5
1,607,555 - CCNA_01497 0.60 +0.4
1,607,690 - CCNA_01497 0.73 -0.5
1,607,714 + CCNA_01497 0.76 -1.3
1,607,783 + CCNA_01497 0.83 -0.5
1,607,789 + CCNA_01497 0.83 -1.1
1,607,866 + -0.6
1,607,923 - -0.8
1,608,032 - -3.1
1,608,125 + -0.5
1,608,126 + -0.1
1,608,139 - +0.1
1,608,149 + +0.1
1,608,155 + +0.6
1,608,161 + +1.0
1,608,161 + +0.7
1,608,161 + +1.1
1,608,163 - +0.3
1,608,169 - +0.5
1,608,169 - +0.6
1,608,169 - -2.6
1,608,169 - -1.3
1,608,169 - -0.3
1,608,176 + -0.4
1,608,176 + -0.3
1,608,184 - -0.5
1,608,184 - -0.7
1,608,201 + +0.6
1,608,206 + CCNA_01498 0.10 -0.2
1,608,206 + CCNA_01498 0.10 -0.1
1,608,209 - CCNA_01498 0.10 -1.8
1,608,269 - CCNA_01498 0.14 -1.0
1,608,273 - CCNA_01498 0.15 -1.4
1,608,319 + CCNA_01498 0.18 +0.4
1,608,351 - CCNA_01498 0.20 +0.8
1,608,394 - CCNA_01498 0.23 +1.1
1,608,410 - CCNA_01498 0.24 +0.2
1,608,425 + CCNA_01498 0.25 -0.0
1,608,425 + CCNA_01498 0.25 -0.5
1,608,532 + CCNA_01498 0.32 +0.9
1,608,565 - CCNA_01498 0.35 -1.8
1,608,590 + CCNA_01498 0.36 +0.2
1,608,598 - CCNA_01498 0.37 +0.3
1,608,609 + CCNA_01498 0.38 -1.1
1,608,613 - CCNA_01498 0.38 +0.1
1,608,622 + CCNA_01498 0.39 +0.2
1,608,720 - CCNA_01498 0.45 -0.4
1,608,767 - CCNA_01498 0.48 -1.5
1,608,798 - CCNA_01498 0.51 -0.7
1,608,805 + CCNA_01498 0.51 +0.4
1,608,853 + CCNA_01498 0.54 -0.7
1,608,871 + CCNA_01498 0.55 -1.9
1,608,881 + CCNA_01498 0.56 -1.9
1,608,881 + CCNA_01498 0.56 -0.9
1,608,889 - CCNA_01498 0.57 -0.6
1,608,889 - CCNA_01498 0.57 +0.4
1,608,889 - CCNA_01498 0.57 -0.6
1,608,889 - CCNA_01498 0.57 +0.7
1,608,932 + CCNA_01498 0.60 +0.2
1,608,932 - CCNA_01498 0.60 -1.4
1,608,933 + CCNA_01498 0.60 -0.6

Or see this region's nucleotide sequence