Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01426 and CCNA_01427 are separated by 265 nucleotides CCNA_01427 and CCNA_01429 are separated by 121 nucleotides CCNA_01429 and CCNA_01430 overlap by 16 nucleotides CCNA_01430 and CCNA_01431 are separated by 175 nucleotides
CCNA_01426: CCNA_01426 - chemotaxis receiver domain protein cheYIII, at 1,543,638 to 1,544,192
_01426
CCNA_01427: CCNA_01427 - beta-barrel assembly machine (BAM) protein BamE, at 1,544,458 to 1,544,940
_01427
CCNA_01429: CCNA_01429 - ubiquinol-cytochrome C reductase chaperone, at 1,545,062 to 1,545,592
_01429
CCNA_01430: CCNA_01430 - hypothetical protein, at 1,545,577 to 1,546,116
_01430
CCNA_01431: CCNA_01431 - fatty acid/phospholipid synthesis protein plsX, at 1,546,292 to 1,547,374
_01431
Position (kb)
1545
1546 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1544.119 kb on - strand, within CCNA_01426 at 1544.380 kb on + strand at 1544.380 kb on + strand at 1544.385 kb on + strand at 1544.439 kb on - strand at 1544.458 kb on - strand at 1544.497 kb on + strand at 1544.621 kb on - strand, within CCNA_01427 at 1544.974 kb on - strand at 1545.019 kb on - strand at 1545.019 kb on - strand at 1545.070 kb on + strand at 1545.078 kb on - strand at 1545.093 kb on - strand at 1545.108 kb on + strand at 1545.115 kb on + strand, within CCNA_01429 at 1545.118 kb on + strand, within CCNA_01429 at 1545.139 kb on + strand, within CCNA_01429 at 1545.147 kb on - strand, within CCNA_01429 at 1545.165 kb on + strand, within CCNA_01429 at 1545.171 kb on - strand, within CCNA_01429 at 1545.231 kb on - strand, within CCNA_01429 at 1545.250 kb on + strand, within CCNA_01429 at 1545.250 kb on + strand, within CCNA_01429 at 1545.253 kb on - strand, within CCNA_01429 at 1545.271 kb on + strand, within CCNA_01429 at 1545.281 kb on + strand, within CCNA_01429 at 1545.281 kb on + strand, within CCNA_01429 at 1545.294 kb on + strand, within CCNA_01429 at 1545.324 kb on + strand, within CCNA_01429 at 1545.332 kb on + strand, within CCNA_01429 at 1545.391 kb on + strand, within CCNA_01429 at 1545.399 kb on - strand, within CCNA_01429 at 1545.406 kb on - strand, within CCNA_01429 at 1545.465 kb on + strand, within CCNA_01429 at 1545.473 kb on - strand, within CCNA_01429 at 1545.473 kb on - strand, within CCNA_01429 at 1545.521 kb on - strand, within CCNA_01429 at 1545.569 kb on + strand at 1545.569 kb on + strand at 1545.586 kb on + strand at 1545.586 kb on + strand at 1545.586 kb on + strand at 1545.594 kb on - strand at 1545.673 kb on - strand, within CCNA_01430 at 1545.675 kb on + strand, within CCNA_01430 at 1545.683 kb on - strand, within CCNA_01430 at 1545.710 kb on + strand, within CCNA_01430 at 1545.710 kb on + strand, within CCNA_01430 at 1545.710 kb on + strand, within CCNA_01430 at 1545.710 kb on + strand, within CCNA_01430 at 1545.718 kb on - strand, within CCNA_01430 at 1545.895 kb on - strand, within CCNA_01430 at 1545.914 kb on - strand, within CCNA_01430 at 1545.951 kb on - strand, within CCNA_01430 at 1545.977 kb on + strand, within CCNA_01430 at 1546.041 kb on - strand, within CCNA_01430 at 1546.094 kb on + strand at 1546.160 kb on + strand at 1546.160 kb on + strand at 1546.164 kb on + strand at 1546.166 kb on - strand at 1546.166 kb on - strand at 1546.190 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 1,544,119 - CCNA_01426 0.87 -0.0 1,544,380 + -0.7 1,544,380 + -1.4 1,544,385 + -0.3 1,544,439 - +1.9 1,544,458 - +0.7 1,544,497 + -1.0 1,544,621 - CCNA_01427 0.34 +1.0 1,544,974 - -2.8 1,545,019 - -0.0 1,545,019 - +0.3 1,545,070 + +1.7 1,545,078 - -0.5 1,545,093 - -2.2 1,545,108 + -0.8 1,545,115 + CCNA_01429 0.10 +0.3 1,545,118 + CCNA_01429 0.11 -0.5 1,545,139 + CCNA_01429 0.15 +0.0 1,545,147 - CCNA_01429 0.16 +0.8 1,545,165 + CCNA_01429 0.19 +0.4 1,545,171 - CCNA_01429 0.21 -1.1 1,545,231 - CCNA_01429 0.32 -0.6 1,545,250 + CCNA_01429 0.35 +0.3 1,545,250 + CCNA_01429 0.35 -0.5 1,545,253 - CCNA_01429 0.36 +0.3 1,545,271 + CCNA_01429 0.39 +0.3 1,545,281 + CCNA_01429 0.41 +0.8 1,545,281 + CCNA_01429 0.41 +0.7 1,545,294 + CCNA_01429 0.44 -0.3 1,545,324 + CCNA_01429 0.49 -0.3 1,545,332 + CCNA_01429 0.51 +0.5 1,545,391 + CCNA_01429 0.62 +0.1 1,545,399 - CCNA_01429 0.63 +0.2 1,545,406 - CCNA_01429 0.65 -0.8 1,545,465 + CCNA_01429 0.76 +1.2 1,545,473 - CCNA_01429 0.77 +0.0 1,545,473 - CCNA_01429 0.77 -1.3 1,545,521 - CCNA_01429 0.86 -0.5 1,545,569 + +0.9 1,545,569 + +0.2 1,545,586 + +0.6 1,545,586 + +0.0 1,545,586 + -0.4 1,545,594 - -1.2 1,545,673 - CCNA_01430 0.18 -0.5 1,545,675 + CCNA_01430 0.18 +0.3 1,545,683 - CCNA_01430 0.20 +0.3 1,545,710 + CCNA_01430 0.25 +3.3 1,545,710 + CCNA_01430 0.25 +0.1 1,545,710 + CCNA_01430 0.25 +1.1 1,545,710 + CCNA_01430 0.25 -0.5 1,545,718 - CCNA_01430 0.26 +0.3 1,545,895 - CCNA_01430 0.59 -0.8 1,545,914 - CCNA_01430 0.62 +0.1 1,545,951 - CCNA_01430 0.69 -0.9 1,545,977 + CCNA_01430 0.74 +0.7 1,546,041 - CCNA_01430 0.86 -0.7 1,546,094 + +1.1 1,546,160 + +0.1 1,546,160 + +0.7 1,546,164 + +1.2 1,546,166 - -0.5 1,546,166 - -0.0 1,546,190 + -0.5
Or see this region's nucleotide sequence