Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01254

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01253 and CCNA_01254 overlap by 1 nucleotidesCCNA_01254 and CCNA_01255 are separated by 100 nucleotidesCCNA_01255 and CCNA_01256 are separated by 437 nucleotides CCNA_01253: CCNA_01253 - dihydrodipicolinate synthase, at 1,381,534 to 1,382,418 _01253 CCNA_01254: CCNA_01254 - SsrA-binding protein, at 1,382,418 to 1,382,876 _01254 CCNA_01255: CCNA_01255 - hypothetical protein, at 1,382,977 to 1,383,126 _01255 CCNA_01256: CCNA_01256 - hypothetical protein, at 1,383,564 to 1,384,559 _01256 Position (kb) 1382 1383Strain fitness (log2 ratio) -2 -1 0 1 2at 1381.421 kb on + strandat 1381.421 kb on + strandat 1381.421 kb on + strandat 1381.421 kb on + strandat 1381.429 kb on - strandat 1381.465 kb on + strandat 1382.407 kb on + strandat 1382.412 kb on + strandat 1382.842 kb on + strandat 1382.860 kb on - strandat 1382.889 kb on + strandat 1382.889 kb on + strandat 1382.897 kb on - strandat 1382.979 kb on + strandat 1382.987 kb on - strandat 1382.989 kb on + strandat 1383.057 kb on - strand, within CCNA_01255at 1383.058 kb on - strand, within CCNA_01255at 1383.062 kb on + strand, within CCNA_01255at 1383.082 kb on + strand, within CCNA_01255at 1383.082 kb on + strand, within CCNA_01255at 1383.083 kb on + strand, within CCNA_01255at 1383.091 kb on - strand, within CCNA_01255at 1383.102 kb on - strand, within CCNA_01255at 1383.254 kb on - strandat 1383.297 kb on + strandat 1383.416 kb on + strandat 1383.444 kb on - strandat 1383.544 kb on + strandat 1383.551 kb on + strandat 1383.559 kb on - strandat 1383.562 kb on + strandat 1383.573 kb on + strandat 1383.587 kb on + strandat 1383.595 kb on - strandat 1383.601 kb on + strandat 1383.613 kb on + strandat 1383.614 kb on - strandat 1383.643 kb on + strandat 1383.664 kb on + strand, within CCNA_01256at 1383.676 kb on + strand, within CCNA_01256at 1383.681 kb on + strand, within CCNA_01256at 1383.730 kb on - strand, within CCNA_01256at 1383.754 kb on - strand, within CCNA_01256at 1383.756 kb on + strand, within CCNA_01256at 1383.764 kb on - strand, within CCNA_01256at 1383.802 kb on + strand, within CCNA_01256at 1383.802 kb on + strand, within CCNA_01256at 1383.810 kb on - strand, within CCNA_01256at 1383.810 kb on - strand, within CCNA_01256at 1383.810 kb on - strand, within CCNA_01256at 1383.866 kb on - strand, within CCNA_01256

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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1,381,421 + +1.8
1,381,421 + +0.3
1,381,421 + +0.3
1,381,421 + -0.1
1,381,429 - +0.8
1,381,465 + +0.5
1,382,407 + +0.9
1,382,412 + -0.9
1,382,842 + -0.1
1,382,860 - +0.2
1,382,889 + +0.6
1,382,889 + +0.1
1,382,897 - -0.1
1,382,979 + -0.3
1,382,987 - +0.2
1,382,989 + +0.5
1,383,057 - CCNA_01255 0.53 +0.2
1,383,058 - CCNA_01255 0.54 +1.5
1,383,062 + CCNA_01255 0.57 +0.7
1,383,082 + CCNA_01255 0.70 +0.3
1,383,082 + CCNA_01255 0.70 -0.3
1,383,083 + CCNA_01255 0.71 -0.4
1,383,091 - CCNA_01255 0.76 +0.8
1,383,102 - CCNA_01255 0.83 +0.7
1,383,254 - -0.5
1,383,297 + -0.1
1,383,416 + +0.2
1,383,444 - -0.5
1,383,544 + -1.2
1,383,551 + -0.1
1,383,559 - +0.2
1,383,562 + -1.1
1,383,573 + -1.8
1,383,587 + -0.8
1,383,595 - +0.1
1,383,601 + -0.3
1,383,613 + +2.0
1,383,614 - -1.6
1,383,643 + +0.1
1,383,664 + CCNA_01256 0.10 -1.2
1,383,676 + CCNA_01256 0.11 +0.4
1,383,681 + CCNA_01256 0.12 +0.3
1,383,730 - CCNA_01256 0.17 +1.4
1,383,754 - CCNA_01256 0.19 +1.9
1,383,756 + CCNA_01256 0.19 +0.6
1,383,764 - CCNA_01256 0.20 +0.3
1,383,802 + CCNA_01256 0.24 -0.7
1,383,802 + CCNA_01256 0.24 +0.5
1,383,810 - CCNA_01256 0.25 +0.2
1,383,810 - CCNA_01256 0.25 -0.5
1,383,810 - CCNA_01256 0.25 +0.5
1,383,866 - CCNA_01256 0.30 -0.3

Or see this region's nucleotide sequence