Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01253

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01252 and CCNA_01253 are separated by 253 nucleotidesCCNA_01253 and CCNA_01254 overlap by 1 nucleotidesCCNA_01254 and CCNA_01255 are separated by 100 nucleotides CCNA_01252: CCNA_01252 - soluble lytic murein transglycosylase, at 1,379,181 to 1,381,280 _01252 CCNA_01253: CCNA_01253 - dihydrodipicolinate synthase, at 1,381,534 to 1,382,418 _01253 CCNA_01254: CCNA_01254 - SsrA-binding protein, at 1,382,418 to 1,382,876 _01254 CCNA_01255: CCNA_01255 - hypothetical protein, at 1,382,977 to 1,383,126 _01255 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -1 0 1 2at 1380.555 kb on + strand, within CCNA_01252at 1380.721 kb on + strand, within CCNA_01252at 1380.729 kb on - strand, within CCNA_01252at 1380.753 kb on + strand, within CCNA_01252at 1380.794 kb on - strand, within CCNA_01252at 1380.796 kb on + strand, within CCNA_01252at 1380.801 kb on + strand, within CCNA_01252at 1380.801 kb on + strand, within CCNA_01252at 1380.801 kb on + strand, within CCNA_01252at 1380.804 kb on - strand, within CCNA_01252at 1380.804 kb on - strand, within CCNA_01252at 1380.804 kb on - strand, within CCNA_01252at 1380.809 kb on - strand, within CCNA_01252at 1380.809 kb on - strand, within CCNA_01252at 1380.809 kb on - strand, within CCNA_01252at 1380.809 kb on - strand, within CCNA_01252at 1380.809 kb on - strand, within CCNA_01252at 1380.868 kb on + strand, within CCNA_01252at 1380.876 kb on - strand, within CCNA_01252at 1380.885 kb on + strand, within CCNA_01252at 1380.941 kb on - strand, within CCNA_01252at 1380.955 kb on + strand, within CCNA_01252at 1380.962 kb on + strand, within CCNA_01252at 1380.991 kb on + strand, within CCNA_01252at 1380.991 kb on + strand, within CCNA_01252at 1380.993 kb on - strand, within CCNA_01252at 1381.044 kb on + strand, within CCNA_01252at 1381.044 kb on + strand, within CCNA_01252at 1381.044 kb on + strand, within CCNA_01252at 1381.052 kb on - strand, within CCNA_01252at 1381.052 kb on - strand, within CCNA_01252at 1381.052 kb on - strand, within CCNA_01252at 1381.052 kb on - strand, within CCNA_01252at 1381.052 kb on - strand, within CCNA_01252at 1381.052 kb on - strand, within CCNA_01252at 1381.107 kb on - strandat 1381.114 kb on - strandat 1381.166 kb on + strandat 1381.174 kb on - strandat 1381.181 kb on + strandat 1381.181 kb on + strandat 1381.181 kb on + strandat 1381.254 kb on - strandat 1381.331 kb on + strandat 1381.331 kb on + strandat 1381.334 kb on - strandat 1381.357 kb on - strandat 1381.394 kb on + strandat 1381.402 kb on - strandat 1381.402 kb on - strandat 1381.416 kb on - strandat 1381.421 kb on + strandat 1381.421 kb on + strandat 1381.421 kb on + strandat 1381.421 kb on + strandat 1381.429 kb on - strandat 1381.465 kb on + strandat 1382.407 kb on + strandat 1382.412 kb on + strandat 1382.842 kb on + strandat 1382.860 kb on - strandat 1382.889 kb on + strandat 1382.889 kb on + strandat 1382.897 kb on - strandat 1382.979 kb on + strandat 1382.987 kb on - strandat 1382.989 kb on + strandat 1383.057 kb on - strand, within CCNA_01255at 1383.058 kb on - strand, within CCNA_01255at 1383.062 kb on + strand, within CCNA_01255at 1383.082 kb on + strand, within CCNA_01255at 1383.082 kb on + strand, within CCNA_01255at 1383.083 kb on + strand, within CCNA_01255at 1383.091 kb on - strand, within CCNA_01255at 1383.102 kb on - strand, within CCNA_01255at 1383.254 kb on - strandat 1383.297 kb on + strandat 1383.416 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
remove
1,380,555 + CCNA_01252 0.65 +0.4
1,380,721 + CCNA_01252 0.73 +0.4
1,380,729 - CCNA_01252 0.74 +0.3
1,380,753 + CCNA_01252 0.75 +0.5
1,380,794 - CCNA_01252 0.77 +0.9
1,380,796 + CCNA_01252 0.77 +0.4
1,380,801 + CCNA_01252 0.77 +0.5
1,380,801 + CCNA_01252 0.77 +1.3
1,380,801 + CCNA_01252 0.77 +0.7
1,380,804 - CCNA_01252 0.77 -1.1
1,380,804 - CCNA_01252 0.77 +0.7
1,380,804 - CCNA_01252 0.77 +0.5
1,380,809 - CCNA_01252 0.78 +0.5
1,380,809 - CCNA_01252 0.78 +0.6
1,380,809 - CCNA_01252 0.78 -0.0
1,380,809 - CCNA_01252 0.78 +1.0
1,380,809 - CCNA_01252 0.78 +1.0
1,380,868 + CCNA_01252 0.80 +1.2
1,380,876 - CCNA_01252 0.81 +0.6
1,380,885 + CCNA_01252 0.81 -0.0
1,380,941 - CCNA_01252 0.84 +0.5
1,380,955 + CCNA_01252 0.84 +0.0
1,380,962 + CCNA_01252 0.85 +0.2
1,380,991 + CCNA_01252 0.86 +0.9
1,380,991 + CCNA_01252 0.86 +0.2
1,380,993 - CCNA_01252 0.86 +0.6
1,381,044 + CCNA_01252 0.89 +0.1
1,381,044 + CCNA_01252 0.89 +0.2
1,381,044 + CCNA_01252 0.89 +0.6
1,381,052 - CCNA_01252 0.89 +1.8
1,381,052 - CCNA_01252 0.89 +0.5
1,381,052 - CCNA_01252 0.89 +0.8
1,381,052 - CCNA_01252 0.89 +0.9
1,381,052 - CCNA_01252 0.89 +0.2
1,381,052 - CCNA_01252 0.89 +0.9
1,381,107 - +0.9
1,381,114 - +1.0
1,381,166 + +0.6
1,381,174 - +0.6
1,381,181 + +0.0
1,381,181 + -0.1
1,381,181 + +0.3
1,381,254 - +0.4
1,381,331 + +0.4
1,381,331 + +0.1
1,381,334 - -0.7
1,381,357 - +0.1
1,381,394 + -0.2
1,381,402 - +0.2
1,381,402 - -0.3
1,381,416 - -1.4
1,381,421 + +1.8
1,381,421 + +0.3
1,381,421 + +0.3
1,381,421 + -0.1
1,381,429 - +0.8
1,381,465 + +0.5
1,382,407 + +0.9
1,382,412 + -0.9
1,382,842 + -0.1
1,382,860 - +0.2
1,382,889 + +0.6
1,382,889 + +0.1
1,382,897 - -0.1
1,382,979 + -0.3
1,382,987 - +0.2
1,382,989 + +0.5
1,383,057 - CCNA_01255 0.53 +0.2
1,383,058 - CCNA_01255 0.54 +1.5
1,383,062 + CCNA_01255 0.57 +0.7
1,383,082 + CCNA_01255 0.70 +0.3
1,383,082 + CCNA_01255 0.70 -0.3
1,383,083 + CCNA_01255 0.71 -0.4
1,383,091 - CCNA_01255 0.76 +0.8
1,383,102 - CCNA_01255 0.83 +0.7
1,383,254 - -0.5
1,383,297 + -0.1
1,383,416 + +0.2

Or see this region's nucleotide sequence