Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01129

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03890 and CCNA_01128 are separated by 65 nucleotidesCCNA_01128 and CCNA_01129 are separated by 147 nucleotidesCCNA_01129 and CCNA_01130 are separated by 14 nucleotidesCCNA_01130 and CCNA_01131 are separated by 9 nucleotides CCNA_03890: CCNA_03890 - hypothetical protein, at 1,231,609 to 1,232,988 _03890 CCNA_01128: CCNA_01128 - hypothetical protein, at 1,233,054 to 1,233,356 _01128 CCNA_01129: CCNA_01129 - flagellar biosynthesis protein FliQ, at 1,233,504 to 1,233,770 _01129 CCNA_01130: CCNA_01130 - flagellar biosynthesis protein FliR, at 1,233,785 to 1,234,540 _01130 CCNA_01131: CCNA_01131 - flagellar biosynthesis protein FlhB, at 1,234,550 to 1,235,635 _01131 Position (kb) 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1232.506 kb on + strand, within CCNA_03890at 1232.514 kb on - strand, within CCNA_03890at 1232.549 kb on - strand, within CCNA_03890at 1232.589 kb on + strand, within CCNA_03890at 1232.593 kb on + strand, within CCNA_03890at 1232.599 kb on + strand, within CCNA_03890at 1232.607 kb on - strand, within CCNA_03890at 1232.639 kb on + strand, within CCNA_03890at 1232.639 kb on + strand, within CCNA_03890at 1232.646 kb on - strand, within CCNA_03890at 1232.647 kb on - strand, within CCNA_03890at 1232.647 kb on - strand, within CCNA_03890at 1232.670 kb on - strand, within CCNA_03890at 1232.693 kb on + strand, within CCNA_03890at 1232.818 kb on + strand, within CCNA_03890at 1232.820 kb on + strand, within CCNA_03890at 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.917 kb on - strandat 1232.953 kb on + strandat 1232.961 kb on - strandat 1232.963 kb on + strandat 1232.963 kb on + strandat 1232.971 kb on - strandat 1232.973 kb on + strandat 1232.973 kb on + strandat 1232.973 kb on + strandat 1232.973 kb on + strandat 1232.981 kb on - strandat 1232.981 kb on - strandat 1233.003 kb on - strandat 1233.025 kb on + strandat 1233.038 kb on + strandat 1233.038 kb on + strandat 1233.038 kb on + strandat 1233.038 kb on + strandat 1233.038 kb on + strandat 1233.041 kb on - strandat 1233.041 kb on - strandat 1233.043 kb on + strandat 1233.046 kb on - strandat 1233.046 kb on - strandat 1233.099 kb on + strand, within CCNA_01128at 1233.099 kb on + strand, within CCNA_01128at 1233.100 kb on + strand, within CCNA_01128at 1233.107 kb on - strand, within CCNA_01128at 1233.110 kb on + strand, within CCNA_01128at 1233.113 kb on - strand, within CCNA_01128at 1233.118 kb on - strand, within CCNA_01128at 1233.118 kb on - strand, within CCNA_01128at 1233.120 kb on + strand, within CCNA_01128at 1233.125 kb on + strand, within CCNA_01128at 1233.125 kb on + strand, within CCNA_01128at 1233.125 kb on + strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.144 kb on - strand, within CCNA_01128at 1233.162 kb on + strand, within CCNA_01128at 1233.162 kb on + strand, within CCNA_01128at 1233.170 kb on - strand, within CCNA_01128at 1233.208 kb on - strand, within CCNA_01128at 1233.226 kb on + strand, within CCNA_01128at 1233.226 kb on + strand, within CCNA_01128at 1233.226 kb on + strand, within CCNA_01128at 1233.231 kb on - strand, within CCNA_01128at 1233.268 kb on + strand, within CCNA_01128at 1233.276 kb on - strand, within CCNA_01128at 1233.280 kb on - strand, within CCNA_01128at 1233.297 kb on + strand, within CCNA_01128at 1233.310 kb on + strand, within CCNA_01128at 1233.319 kb on + strand, within CCNA_01128at 1233.370 kb on - strandat 1233.372 kb on + strandat 1233.385 kb on - strandat 1233.556 kb on + strand, within CCNA_01129at 1233.566 kb on - strand, within CCNA_01129at 1233.591 kb on - strand, within CCNA_01129at 1233.617 kb on + strand, within CCNA_01129at 1233.617 kb on + strand, within CCNA_01129at 1233.617 kb on + strand, within CCNA_01129at 1233.648 kb on + strand, within CCNA_01129at 1233.773 kb on + strandat 1233.819 kb on - strandat 1233.854 kb on + strandat 1233.854 kb on + strandat 1233.861 kb on - strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1234.013 kb on + strand, within CCNA_01130at 1234.021 kb on - strand, within CCNA_01130at 1234.216 kb on + strand, within CCNA_01130at 1234.306 kb on - strand, within CCNA_01130at 1234.317 kb on + strand, within CCNA_01130at 1234.385 kb on + strand, within CCNA_01130at 1234.399 kb on + strand, within CCNA_01130at 1234.438 kb on + strand, within CCNA_01130at 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.495 kb on + strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.503 kb on - strandat 1234.520 kb on + strandat 1234.520 kb on + strandat 1234.520 kb on + strandat 1234.520 kb on - strandat 1234.530 kb on + strandat 1234.536 kb on + strandat 1234.544 kb on - strandat 1234.632 kb on - strandat 1234.738 kb on - strand, within CCNA_01131

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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1,232,506 + CCNA_03890 0.65 +0.4
1,232,514 - CCNA_03890 0.66 -2.0
1,232,549 - CCNA_03890 0.68 -3.0
1,232,589 + CCNA_03890 0.71 +0.3
1,232,593 + CCNA_03890 0.71 +0.2
1,232,599 + CCNA_03890 0.72 -0.9
1,232,607 - CCNA_03890 0.72 -1.5
1,232,639 + CCNA_03890 0.75 +0.7
1,232,639 + CCNA_03890 0.75 +0.3
1,232,646 - CCNA_03890 0.75 +0.0
1,232,647 - CCNA_03890 0.75 -0.0
1,232,647 - CCNA_03890 0.75 +0.6
1,232,670 - CCNA_03890 0.77 -0.0
1,232,693 + CCNA_03890 0.79 +0.9
1,232,818 + CCNA_03890 0.88 +0.4
1,232,820 + CCNA_03890 0.88 +0.5
1,232,884 + -0.1
1,232,884 + +0.3
1,232,884 + +0.6
1,232,884 + +0.2
1,232,884 + +0.2
1,232,884 + +1.6
1,232,892 - -0.5
1,232,892 - -1.0
1,232,892 - -0.5
1,232,917 - -0.8
1,232,953 + +0.5
1,232,961 - +0.3
1,232,963 + +1.6
1,232,963 + +0.3
1,232,971 - +1.3
1,232,973 + +0.2
1,232,973 + +1.4
1,232,973 + +0.7
1,232,973 + -1.0
1,232,981 - +1.2
1,232,981 - +1.0
1,233,003 - +2.0
1,233,025 + -1.6
1,233,038 + -0.0
1,233,038 + -0.1
1,233,038 + +1.3
1,233,038 + -0.8
1,233,038 + +0.5
1,233,041 - -0.4
1,233,041 - -0.1
1,233,043 + +1.0
1,233,046 - +0.2
1,233,046 - +0.6
1,233,099 + CCNA_01128 0.15 -0.3
1,233,099 + CCNA_01128 0.15 +0.0
1,233,100 + CCNA_01128 0.15 +1.0
1,233,107 - CCNA_01128 0.17 +0.3
1,233,110 + CCNA_01128 0.18 +0.2
1,233,113 - CCNA_01128 0.19 -1.0
1,233,118 - CCNA_01128 0.21 +0.6
1,233,118 - CCNA_01128 0.21 -0.8
1,233,120 + CCNA_01128 0.22 +0.1
1,233,125 + CCNA_01128 0.23 -0.6
1,233,125 + CCNA_01128 0.23 +1.4
1,233,125 + CCNA_01128 0.23 -1.5
1,233,133 - CCNA_01128 0.26 +0.0
1,233,133 - CCNA_01128 0.26 -0.4
1,233,133 - CCNA_01128 0.26 +0.4
1,233,144 - CCNA_01128 0.30 -1.0
1,233,162 + CCNA_01128 0.36 +0.5
1,233,162 + CCNA_01128 0.36 +0.1
1,233,170 - CCNA_01128 0.38 +0.6
1,233,208 - CCNA_01128 0.51 +0.1
1,233,226 + CCNA_01128 0.57 +0.0
1,233,226 + CCNA_01128 0.57 +0.3
1,233,226 + CCNA_01128 0.57 +0.6
1,233,231 - CCNA_01128 0.58 -1.2
1,233,268 + CCNA_01128 0.71 +0.2
1,233,276 - CCNA_01128 0.73 -0.8
1,233,280 - CCNA_01128 0.75 +0.8
1,233,297 + CCNA_01128 0.80 -0.0
1,233,310 + CCNA_01128 0.84 +0.3
1,233,319 + CCNA_01128 0.87 +0.6
1,233,370 - +0.0
1,233,372 + +0.0
1,233,385 - -1.0
1,233,556 + CCNA_01129 0.19 -1.0
1,233,566 - CCNA_01129 0.23 +0.6
1,233,591 - CCNA_01129 0.33 +0.3
1,233,617 + CCNA_01129 0.42 -2.2
1,233,617 + CCNA_01129 0.42 -0.8
1,233,617 + CCNA_01129 0.42 -0.7
1,233,648 + CCNA_01129 0.54 -1.6
1,233,773 + +0.4
1,233,819 - -0.1
1,233,854 + +0.1
1,233,854 + -1.2
1,233,861 - CCNA_01130 0.10 -0.2
1,233,963 + CCNA_01130 0.24 +0.0
1,233,963 + CCNA_01130 0.24 -1.6
1,233,963 + CCNA_01130 0.24 -0.4
1,233,963 + CCNA_01130 0.24 -1.2
1,233,971 - CCNA_01130 0.25 +0.3
1,233,971 - CCNA_01130 0.25 +2.2
1,233,971 - CCNA_01130 0.25 +0.6
1,233,971 - CCNA_01130 0.25 -1.1
1,233,971 - CCNA_01130 0.25 +0.0
1,233,971 - CCNA_01130 0.25 -0.2
1,234,013 + CCNA_01130 0.30 +0.6
1,234,021 - CCNA_01130 0.31 -1.0
1,234,216 + CCNA_01130 0.57 +0.6
1,234,306 - CCNA_01130 0.69 +0.0
1,234,317 + CCNA_01130 0.70 -1.9
1,234,385 + CCNA_01130 0.79 -0.6
1,234,399 + CCNA_01130 0.81 -2.4
1,234,438 + CCNA_01130 0.86 -0.4
1,234,495 + +1.2
1,234,495 + -0.3
1,234,495 + +0.2
1,234,495 + +0.0
1,234,495 + -0.3
1,234,495 + +0.3
1,234,495 + +0.0
1,234,495 + -0.0
1,234,495 + +0.5
1,234,495 + -0.3
1,234,503 - +0.2
1,234,503 - -0.7
1,234,503 - -0.5
1,234,503 - -0.9
1,234,520 + +1.5
1,234,520 + -0.7
1,234,520 + -0.6
1,234,520 - +0.0
1,234,530 + +0.2
1,234,536 + +0.2
1,234,544 - +1.4
1,234,632 - -0.6
1,234,738 - CCNA_01131 0.17 -0.4

Or see this region's nucleotide sequence