Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00903 and CCNA_00904 overlap by 4 nucleotides CCNA_00904 and CCNA_00905 are separated by 28 nucleotides CCNA_00905 and CCNA_00906 are separated by 69 nucleotides
CCNA_00903: CCNA_00903 - inositol transport ATP-binding protein IatA, at 982,938 to 984,485
_00903
CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480
_00904
CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396
_00905
CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380
_00906
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 983.527 kb on + strand, within CCNA_00903 at 983.543 kb on + strand, within CCNA_00903 at 983.543 kb on + strand, within CCNA_00903 at 983.543 kb on + strand, within CCNA_00903 at 983.551 kb on - strand, within CCNA_00903 at 983.642 kb on - strand, within CCNA_00903 at 983.680 kb on - strand, within CCNA_00903 at 983.719 kb on - strand, within CCNA_00903 at 983.734 kb on + strand, within CCNA_00903 at 983.752 kb on - strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.894 kb on + strand, within CCNA_00903 at 983.902 kb on + strand, within CCNA_00903 at 983.939 kb on - strand, within CCNA_00903 at 983.939 kb on - strand, within CCNA_00903 at 983.949 kb on - strand, within CCNA_00903 at 983.953 kb on + strand, within CCNA_00903 at 983.965 kb on + strand, within CCNA_00903 at 983.970 kb on + strand, within CCNA_00903 at 983.970 kb on + strand, within CCNA_00903 at 984.030 kb on - strand, within CCNA_00903 at 984.031 kb on - strand, within CCNA_00903 at 984.031 kb on - strand, within CCNA_00903 at 984.038 kb on - strand, within CCNA_00903 at 984.062 kb on - strand, within CCNA_00903 at 984.080 kb on + strand, within CCNA_00903 at 984.151 kb on - strand, within CCNA_00903 at 984.154 kb on + strand, within CCNA_00903 at 984.168 kb on + strand, within CCNA_00903 at 984.211 kb on + strand, within CCNA_00903 at 984.259 kb on - strand, within CCNA_00903 at 984.321 kb on - strand, within CCNA_00903 at 984.331 kb on - strand at 984.337 kb on - strand at 984.377 kb on - strand at 984.457 kb on + strand at 984.523 kb on + strand at 984.542 kb on + strand at 984.574 kb on - strand at 984.595 kb on + strand, within CCNA_00904 at 984.628 kb on + strand, within CCNA_00904 at 984.635 kb on + strand, within CCNA_00904 at 984.656 kb on - strand, within CCNA_00904 at 984.683 kb on + strand, within CCNA_00904 at 984.683 kb on + strand, within CCNA_00904 at 984.683 kb on + strand, within CCNA_00904 at 984.689 kb on + strand, within CCNA_00904 at 984.691 kb on - strand, within CCNA_00904 at 984.730 kb on - strand, within CCNA_00904 at 984.761 kb on + strand, within CCNA_00904 at 984.777 kb on - strand, within CCNA_00904 at 984.817 kb on + strand, within CCNA_00904 at 984.827 kb on + strand, within CCNA_00904 at 984.827 kb on + strand, within CCNA_00904 at 984.849 kb on - strand, within CCNA_00904 at 984.850 kb on - strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.862 kb on - strand, within CCNA_00904 at 984.865 kb on + strand, within CCNA_00904 at 984.866 kb on + strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.927 kb on - strand, within CCNA_00904 at 984.993 kb on - strand, within CCNA_00904 at 984.998 kb on - strand, within CCNA_00904 at 984.998 kb on - strand, within CCNA_00904 at 985.012 kb on + strand, within CCNA_00904 at 985.012 kb on + strand, within CCNA_00904 at 985.035 kb on + strand, within CCNA_00904 at 985.035 kb on + strand, within CCNA_00904 at 985.035 kb on + strand, within CCNA_00904 at 985.035 kb on + strand, within CCNA_00904 at 985.045 kb on + strand, within CCNA_00904 at 985.067 kb on + strand, within CCNA_00904 at 985.072 kb on + strand, within CCNA_00904 at 985.072 kb on + strand, within CCNA_00904 at 985.080 kb on - strand, within CCNA_00904 at 985.080 kb on - strand, within CCNA_00904 at 985.080 kb on - strand, within CCNA_00904 at 985.085 kb on - strand, within CCNA_00904 at 985.096 kb on + strand, within CCNA_00904 at 985.096 kb on + strand, within CCNA_00904 at 985.097 kb on + strand, within CCNA_00904 at 985.104 kb on - strand, within CCNA_00904 at 985.108 kb on + strand, within CCNA_00904 at 985.117 kb on + strand, within CCNA_00904 at 985.117 kb on + strand, within CCNA_00904 at 985.125 kb on - strand, within CCNA_00904 at 985.167 kb on + strand, within CCNA_00904 at 985.209 kb on - strand, within CCNA_00904 at 985.257 kb on + strand, within CCNA_00904 at 985.257 kb on + strand, within CCNA_00904 at 985.265 kb on - strand, within CCNA_00904 at 985.379 kb on + strand, within CCNA_00904 at 985.426 kb on + strand at 985.429 kb on - strand at 985.447 kb on - strand at 985.447 kb on - strand at 985.482 kb on - strand at 985.482 kb on - strand at 985.482 kb on - strand at 985.492 kb on + strand at 985.497 kb on + strand at 985.497 kb on + strand at 985.497 kb on + strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.513 kb on + strand at 985.513 kb on + strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.544 kb on + strand at 985.549 kb on + strand at 985.557 kb on - strand at 985.619 kb on - strand, within CCNA_00905 at 985.673 kb on + strand, within CCNA_00905 at 985.696 kb on - strand, within CCNA_00905 at 985.737 kb on + strand, within CCNA_00905 at 985.754 kb on - strand, within CCNA_00905 at 985.780 kb on - strand, within CCNA_00905 at 985.800 kb on + strand, within CCNA_00905 at 985.806 kb on - strand, within CCNA_00905 at 985.837 kb on - strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.881 kb on - strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.899 kb on - strand, within CCNA_00905 at 985.924 kb on - strand, within CCNA_00905 at 985.938 kb on - strand, within CCNA_00905 at 985.974 kb on - strand, within CCNA_00905 at 985.979 kb on - strand, within CCNA_00905 at 985.983 kb on + strand, within CCNA_00905 at 986.001 kb on + strand, within CCNA_00905 at 986.002 kb on - strand, within CCNA_00905 at 986.024 kb on + strand, within CCNA_00905 at 986.029 kb on + strand, within CCNA_00905 at 986.029 kb on + strand, within CCNA_00905 at 986.029 kb on + strand, within CCNA_00905 at 986.034 kb on + strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.044 kb on + strand, within CCNA_00905 at 986.052 kb on - strand, within CCNA_00905 at 986.121 kb on - strand, within CCNA_00905 at 986.128 kb on + strand, within CCNA_00905 at 986.136 kb on - strand, within CCNA_00905 at 986.221 kb on + strand, within CCNA_00905 at 986.229 kb on - strand, within CCNA_00905 at 986.310 kb on - strand at 986.380 kb on - strand at 986.391 kb on + strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.419 kb on + strand at 986.426 kb on + strand at 986.427 kb on - strand at 986.464 kb on + strand at 986.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 983,527 + CCNA_00903 0.38 -0.9 983,543 + CCNA_00903 0.39 +0.2 983,543 + CCNA_00903 0.39 +0.4 983,543 + CCNA_00903 0.39 +1.7 983,551 - CCNA_00903 0.40 -1.4 983,642 - CCNA_00903 0.45 -0.2 983,680 - CCNA_00903 0.48 -0.6 983,719 - CCNA_00903 0.50 +0.8 983,734 + CCNA_00903 0.51 +0.0 983,752 - CCNA_00903 0.53 +0.1 983,835 + CCNA_00903 0.58 +0.3 983,835 + CCNA_00903 0.58 +0.4 983,843 - CCNA_00903 0.58 -0.1 983,843 - CCNA_00903 0.58 -0.6 983,843 - CCNA_00903 0.58 -0.5 983,843 - CCNA_00903 0.58 -1.4 983,843 - CCNA_00903 0.58 +0.5 983,843 - CCNA_00903 0.58 -0.7 983,894 + CCNA_00903 0.62 -1.0 983,902 + CCNA_00903 0.62 -1.4 983,939 - CCNA_00903 0.65 -0.4 983,939 - CCNA_00903 0.65 -0.1 983,949 - CCNA_00903 0.65 -0.6 983,953 + CCNA_00903 0.66 -0.3 983,965 + CCNA_00903 0.66 +0.5 983,970 + CCNA_00903 0.67 +1.3 983,970 + CCNA_00903 0.67 -1.0 984,030 - CCNA_00903 0.71 +0.0 984,031 - CCNA_00903 0.71 -0.2 984,031 - CCNA_00903 0.71 +0.2 984,038 - CCNA_00903 0.71 +0.6 984,062 - CCNA_00903 0.73 -0.3 984,080 + CCNA_00903 0.74 +0.3 984,151 - CCNA_00903 0.78 -0.2 984,154 + CCNA_00903 0.79 -1.5 984,168 + CCNA_00903 0.79 +0.2 984,211 + CCNA_00903 0.82 -0.3 984,259 - CCNA_00903 0.85 -2.3 984,321 - CCNA_00903 0.89 -0.4 984,331 - -0.8 984,337 - -0.4 984,377 - -0.5 984,457 + -0.3 984,523 + -0.4 984,542 + -0.4 984,574 - -0.7 984,595 + CCNA_00904 0.11 +0.4 984,628 + CCNA_00904 0.15 -0.2 984,635 + CCNA_00904 0.15 +0.5 984,656 - CCNA_00904 0.17 -0.1 984,683 + CCNA_00904 0.20 -1.6 984,683 + CCNA_00904 0.20 +0.3 984,683 + CCNA_00904 0.20 +0.2 984,689 + CCNA_00904 0.21 +0.7 984,691 - CCNA_00904 0.21 -1.6 984,730 - CCNA_00904 0.25 -0.6 984,761 + CCNA_00904 0.28 +0.7 984,777 - CCNA_00904 0.30 +0.5 984,817 + CCNA_00904 0.34 +0.8 984,827 + CCNA_00904 0.35 -0.1 984,827 + CCNA_00904 0.35 +1.6 984,849 - CCNA_00904 0.37 -0.7 984,850 - CCNA_00904 0.37 -1.1 984,859 + CCNA_00904 0.38 +0.1 984,859 + CCNA_00904 0.38 -0.6 984,859 + CCNA_00904 0.38 +0.5 984,862 - CCNA_00904 0.38 -0.8 984,865 + CCNA_00904 0.38 +0.3 984,866 + CCNA_00904 0.38 -0.2 984,867 - CCNA_00904 0.39 +0.6 984,867 - CCNA_00904 0.39 -0.3 984,867 - CCNA_00904 0.39 -1.8 984,867 - CCNA_00904 0.39 -1.6 984,927 - CCNA_00904 0.45 +0.5 984,993 - CCNA_00904 0.51 +0.5 984,998 - CCNA_00904 0.52 -2.0 984,998 - CCNA_00904 0.52 +0.2 985,012 + CCNA_00904 0.53 -0.6 985,012 + CCNA_00904 0.53 -0.1 985,035 + CCNA_00904 0.55 +0.3 985,035 + CCNA_00904 0.55 -0.5 985,035 + CCNA_00904 0.55 -2.5 985,035 + CCNA_00904 0.55 +0.2 985,045 + CCNA_00904 0.56 +0.5 985,067 + CCNA_00904 0.59 -0.5 985,072 + CCNA_00904 0.59 -0.6 985,072 + CCNA_00904 0.59 +0.9 985,080 - CCNA_00904 0.60 -1.0 985,080 - CCNA_00904 0.60 -0.2 985,080 - CCNA_00904 0.60 -0.1 985,085 - CCNA_00904 0.60 +1.3 985,096 + CCNA_00904 0.61 +0.3 985,096 + CCNA_00904 0.61 +0.0 985,097 + CCNA_00904 0.62 +0.9 985,104 - CCNA_00904 0.62 -1.1 985,108 + CCNA_00904 0.63 -0.7 985,117 + CCNA_00904 0.64 +0.5 985,117 + CCNA_00904 0.64 -0.7 985,125 - CCNA_00904 0.64 -0.6 985,167 + CCNA_00904 0.69 -0.1 985,209 - CCNA_00904 0.73 -1.8 985,257 + CCNA_00904 0.78 +0.2 985,257 + CCNA_00904 0.78 +0.4 985,265 - CCNA_00904 0.78 -0.6 985,379 + CCNA_00904 0.90 +0.1 985,426 + +0.6 985,429 - +0.6 985,447 - +0.0 985,447 - +0.0 985,482 - -0.7 985,482 - +1.2 985,482 - -0.4 985,492 + +0.3 985,497 + +0.9 985,497 + -0.7 985,497 + -0.3 985,505 - -2.9 985,505 - +0.1 985,507 + -0.0 985,507 + +0.1 985,507 + +1.1 985,507 + +1.1 985,507 + +0.0 985,507 + +0.3 985,507 + +0.0 985,507 + +0.2 985,507 + +0.6 985,507 + +0.4 985,507 + +1.1 985,507 + -0.4 985,507 + -0.3 985,507 + +0.5 985,507 + +0.4 985,507 + +0.5 985,507 + +0.7 985,507 + +1.3 985,513 + -0.0 985,513 + +1.0 985,515 - +1.4 985,515 - -0.2 985,515 - -1.0 985,515 - +0.1 985,515 - +0.6 985,515 - -1.7 985,515 - -1.1 985,515 - -1.9 985,544 + +0.3 985,549 + +0.2 985,557 - -0.7 985,619 - CCNA_00905 0.12 +1.3 985,673 + CCNA_00905 0.18 -0.7 985,696 - CCNA_00905 0.21 -0.9 985,737 + CCNA_00905 0.26 +0.4 985,754 - CCNA_00905 0.28 +1.0 985,780 - CCNA_00905 0.31 +0.4 985,800 + CCNA_00905 0.33 +0.1 985,806 - CCNA_00905 0.33 -1.3 985,837 - CCNA_00905 0.37 +0.1 985,854 + CCNA_00905 0.39 +0.1 985,854 + CCNA_00905 0.39 +0.2 985,854 + CCNA_00905 0.39 +1.3 985,862 - CCNA_00905 0.40 +0.5 985,881 - CCNA_00905 0.42 -1.3 985,896 + CCNA_00905 0.44 -0.9 985,899 - CCNA_00905 0.44 -0.1 985,924 - CCNA_00905 0.47 -0.4 985,938 - CCNA_00905 0.48 -0.0 985,974 - CCNA_00905 0.52 -2.4 985,979 - CCNA_00905 0.53 -1.4 985,983 + CCNA_00905 0.53 +0.1 986,001 + CCNA_00905 0.55 -1.7 986,002 - CCNA_00905 0.56 -1.0 986,024 + CCNA_00905 0.58 +1.1 986,029 + CCNA_00905 0.59 +0.6 986,029 + CCNA_00905 0.59 +0.4 986,029 + CCNA_00905 0.59 -1.5 986,034 + CCNA_00905 0.59 -0.7 986,037 - CCNA_00905 0.59 +0.3 986,037 - CCNA_00905 0.59 +0.2 986,037 - CCNA_00905 0.59 -0.8 986,044 + CCNA_00905 0.60 +1.3 986,052 - CCNA_00905 0.61 +0.4 986,121 - CCNA_00905 0.69 +0.6 986,128 + CCNA_00905 0.70 +0.1 986,136 - CCNA_00905 0.71 -1.9 986,221 + CCNA_00905 0.80 +0.0 986,229 - CCNA_00905 0.81 +0.0 986,310 - -0.7 986,380 - +0.3 986,391 + +0.1 986,399 - +0.8 986,399 - +0.7 986,419 + -1.5 986,426 + +0.2 986,427 - +0.3 986,464 + -0.2 986,471 - +0.4
Or see this region's nucleotide sequence