Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00871

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00869 and CCNA_00870 are separated by 65 nucleotidesCCNA_00870 and CCNA_00871 are separated by 19 nucleotidesCCNA_00871 and CCNA_00872 overlap by 4 nucleotidesCCNA_00872 and CCNA_00873 are separated by 28 nucleotides CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383 _00869 CCNA_00870: CCNA_00870 - hypothetical protein, at 950,449 to 950,886 _00870 CCNA_00871: CCNA_00871 - carbon-nitrogen hydrolase family protein, at 950,906 to 951,757 _00871 CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008 _00872 CCNA_00873: CCNA_00873 - amidophosphoribosyltransferase family protein, at 952,037 to 952,834 _00873 Position (kb) 950 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 949.930 kb on + strand, within CCNA_00869at 949.957 kb on - strand, within CCNA_00869at 949.995 kb on - strand, within CCNA_00869at 950.050 kb on - strand, within CCNA_00869at 950.065 kb on + strand, within CCNA_00869at 950.074 kb on + strand, within CCNA_00869at 950.082 kb on - strand, within CCNA_00869at 950.111 kb on + strandat 950.112 kb on - strandat 950.119 kb on - strandat 950.120 kb on - strandat 950.123 kb on + strandat 950.162 kb on - strandat 950.162 kb on - strandat 950.162 kb on - strandat 950.191 kb on - strandat 950.233 kb on + strandat 950.246 kb on - strandat 950.349 kb on - strandat 950.349 kb on - strandat 950.386 kb on - strandat 950.386 kb on - strandat 950.387 kb on - strandat 950.387 kb on - strandat 950.388 kb on - strandat 950.432 kb on + strandat 950.447 kb on + strandat 950.503 kb on - strand, within CCNA_00870at 950.503 kb on - strand, within CCNA_00870at 950.507 kb on + strand, within CCNA_00870at 950.518 kb on + strand, within CCNA_00870at 950.527 kb on - strand, within CCNA_00870at 950.603 kb on - strand, within CCNA_00870at 950.607 kb on - strand, within CCNA_00870at 950.682 kb on + strand, within CCNA_00870at 950.726 kb on - strand, within CCNA_00870at 950.742 kb on - strand, within CCNA_00870at 950.764 kb on + strand, within CCNA_00870at 950.783 kb on + strand, within CCNA_00870at 950.793 kb on + strand, within CCNA_00870at 950.798 kb on + strand, within CCNA_00870at 950.801 kb on - strand, within CCNA_00870at 950.887 kb on + strandat 950.895 kb on - strandat 950.905 kb on + strandat 950.913 kb on - strandat 950.941 kb on - strandat 950.978 kb on + strandat 950.986 kb on - strandat 951.029 kb on + strand, within CCNA_00871at 951.052 kb on + strand, within CCNA_00871at 951.070 kb on - strand, within CCNA_00871at 951.085 kb on + strand, within CCNA_00871at 951.098 kb on - strand, within CCNA_00871at 951.112 kb on + strand, within CCNA_00871at 951.120 kb on - strand, within CCNA_00871at 951.125 kb on + strand, within CCNA_00871at 951.200 kb on + strand, within CCNA_00871at 951.208 kb on - strand, within CCNA_00871at 951.208 kb on - strand, within CCNA_00871at 951.218 kb on + strand, within CCNA_00871at 951.226 kb on - strand, within CCNA_00871at 951.269 kb on + strand, within CCNA_00871at 951.274 kb on + strand, within CCNA_00871at 951.280 kb on + strand, within CCNA_00871at 951.292 kb on - strand, within CCNA_00871at 951.338 kb on - strand, within CCNA_00871at 951.369 kb on + strand, within CCNA_00871at 951.369 kb on + strand, within CCNA_00871at 951.482 kb on + strand, within CCNA_00871at 951.482 kb on + strand, within CCNA_00871at 951.482 kb on + strand, within CCNA_00871at 951.482 kb on + strand, within CCNA_00871at 951.490 kb on - strand, within CCNA_00871at 951.547 kb on - strand, within CCNA_00871at 951.567 kb on + strand, within CCNA_00871at 951.567 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.596 kb on - strand, within CCNA_00871at 951.617 kb on - strand, within CCNA_00871at 951.637 kb on + strand, within CCNA_00871at 951.645 kb on - strand, within CCNA_00871at 951.683 kb on + strandat 951.686 kb on - strandat 951.691 kb on - strandat 951.691 kb on - strandat 951.691 kb on - strandat 951.691 kb on - strandat 951.696 kb on - strandat 951.696 kb on - strandat 951.716 kb on + strandat 951.716 kb on + strandat 951.742 kb on + strandat 951.742 kb on + strandat 951.750 kb on - strandat 951.762 kb on + strandat 951.770 kb on - strandat 951.815 kb on - strand, within CCNA_00872at 951.823 kb on - strand, within CCNA_00872at 951.841 kb on + strand, within CCNA_00872at 951.841 kb on + strand, within CCNA_00872at 951.849 kb on - strand, within CCNA_00872at 951.871 kb on - strand, within CCNA_00872at 951.900 kb on - strand, within CCNA_00872at 951.905 kb on - strand, within CCNA_00872at 951.986 kb on + strandat 951.992 kb on + strandat 951.993 kb on - strandat 951.998 kb on + strandat 952.000 kb on - strandat 952.000 kb on - strandat 952.005 kb on - strandat 952.034 kb on + strandat 952.044 kb on - strandat 952.044 kb on - strandat 952.046 kb on - strandat 952.067 kb on - strandat 952.067 kb on - strandat 952.084 kb on + strandat 952.087 kb on - strandat 952.127 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.166 kb on - strand, within CCNA_00873at 952.205 kb on + strand, within CCNA_00873at 952.222 kb on - strand, within CCNA_00873at 952.248 kb on + strand, within CCNA_00873at 952.288 kb on + strand, within CCNA_00873at 952.297 kb on - strand, within CCNA_00873at 952.376 kb on + strand, within CCNA_00873at 952.378 kb on + strand, within CCNA_00873at 952.378 kb on + strand, within CCNA_00873at 952.384 kb on + strand, within CCNA_00873at 952.399 kb on - strand, within CCNA_00873at 952.424 kb on - strand, within CCNA_00873at 952.429 kb on - strand, within CCNA_00873at 952.463 kb on - strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.550 kb on - strand, within CCNA_00873at 952.555 kb on - strand, within CCNA_00873at 952.555 kb on - strand, within CCNA_00873at 952.559 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.567 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.572 kb on + strand, within CCNA_00873at 952.579 kb on + strand, within CCNA_00873at 952.579 kb on - strand, within CCNA_00873at 952.584 kb on + strand, within CCNA_00873at 952.608 kb on + strand, within CCNA_00873at 952.608 kb on + strand, within CCNA_00873at 952.619 kb on + strand, within CCNA_00873at 952.621 kb on - strand, within CCNA_00873at 952.621 kb on - strand, within CCNA_00873at 952.671 kb on - strand, within CCNA_00873at 952.694 kb on + strand, within CCNA_00873at 952.699 kb on + strand, within CCNA_00873at 952.699 kb on + strand, within CCNA_00873at 952.702 kb on - strand, within CCNA_00873at 952.707 kb on - strand, within CCNA_00873

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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949,930 + CCNA_00869 0.85 -0.9
949,957 - CCNA_00869 0.86 +0.6
949,995 - CCNA_00869 0.87 +0.3
950,050 - CCNA_00869 0.89 -0.8
950,065 + CCNA_00869 0.89 -0.0
950,074 + CCNA_00869 0.90 -1.0
950,082 - CCNA_00869 0.90 +0.2
950,111 + -0.2
950,112 - +0.1
950,119 - +0.1
950,120 - +0.7
950,123 + -0.6
950,162 - +0.3
950,162 - +0.9
950,162 - +1.0
950,191 - +0.2
950,233 + -1.1
950,246 - -0.2
950,349 - +0.8
950,349 - +0.5
950,386 - +0.1
950,386 - -0.6
950,387 - +0.6
950,387 - -0.2
950,388 - +0.7
950,432 + -0.7
950,447 + -1.1
950,503 - CCNA_00870 0.12 +0.3
950,503 - CCNA_00870 0.12 +0.5
950,507 + CCNA_00870 0.13 +0.3
950,518 + CCNA_00870 0.16 -0.6
950,527 - CCNA_00870 0.18 +0.5
950,603 - CCNA_00870 0.35 +0.4
950,607 - CCNA_00870 0.36 +0.3
950,682 + CCNA_00870 0.53 +1.3
950,726 - CCNA_00870 0.63 +0.7
950,742 - CCNA_00870 0.67 -0.5
950,764 + CCNA_00870 0.72 -0.7
950,783 + CCNA_00870 0.76 +0.6
950,793 + CCNA_00870 0.79 +1.9
950,798 + CCNA_00870 0.80 -0.3
950,801 - CCNA_00870 0.80 -0.1
950,887 + +0.7
950,895 - -2.3
950,905 + +0.6
950,913 - +0.0
950,941 - +0.2
950,978 + -1.4
950,986 - +0.7
951,029 + CCNA_00871 0.14 -1.0
951,052 + CCNA_00871 0.17 -0.1
951,070 - CCNA_00871 0.19 +1.1
951,085 + CCNA_00871 0.21 +0.3
951,098 - CCNA_00871 0.23 +0.8
951,112 + CCNA_00871 0.24 -1.1
951,120 - CCNA_00871 0.25 +0.0
951,125 + CCNA_00871 0.26 -0.3
951,200 + CCNA_00871 0.35 +0.0
951,208 - CCNA_00871 0.35 +0.1
951,208 - CCNA_00871 0.35 -0.4
951,218 + CCNA_00871 0.37 +0.1
951,226 - CCNA_00871 0.38 +0.1
951,269 + CCNA_00871 0.43 -0.0
951,274 + CCNA_00871 0.43 -1.0
951,280 + CCNA_00871 0.44 -0.2
951,292 - CCNA_00871 0.45 +0.5
951,338 - CCNA_00871 0.51 +0.9
951,369 + CCNA_00871 0.54 +0.2
951,369 + CCNA_00871 0.54 -0.2
951,482 + CCNA_00871 0.68 +0.3
951,482 + CCNA_00871 0.68 -1.3
951,482 + CCNA_00871 0.68 -1.7
951,482 + CCNA_00871 0.68 +0.2
951,490 - CCNA_00871 0.69 -0.2
951,547 - CCNA_00871 0.75 +0.6
951,567 + CCNA_00871 0.78 +0.3
951,567 - CCNA_00871 0.78 +0.3
951,575 - CCNA_00871 0.79 +0.2
951,575 - CCNA_00871 0.79 +1.1
951,596 - CCNA_00871 0.81 +0.1
951,617 - CCNA_00871 0.83 +0.1
951,637 + CCNA_00871 0.86 -0.5
951,645 - CCNA_00871 0.87 +0.2
951,683 + +0.3
951,686 - -0.1
951,691 - +0.9
951,691 - +0.3
951,691 - -0.5
951,691 - +0.4
951,696 - +0.6
951,696 - +0.2
951,716 + -1.6
951,716 + +0.1
951,742 + -0.3
951,742 + -0.2
951,750 - +0.2
951,762 + +0.6
951,770 - -0.8
951,815 - CCNA_00872 0.24 +0.1
951,823 - CCNA_00872 0.27 +0.6
951,841 + CCNA_00872 0.34 -0.1
951,841 + CCNA_00872 0.34 -0.7
951,849 - CCNA_00872 0.37 +0.1
951,871 - CCNA_00872 0.46 +0.9
951,900 - CCNA_00872 0.57 -1.0
951,905 - CCNA_00872 0.59 +0.3
951,986 + +1.4
951,992 + -0.5
951,993 - +0.3
951,998 + -1.4
952,000 - -0.2
952,000 - -0.9
952,005 - -0.6
952,034 + -0.6
952,044 - -2.1
952,044 - -0.1
952,046 - +0.8
952,067 - +0.2
952,067 - +0.6
952,084 + -0.1
952,087 - -0.7
952,127 + CCNA_00873 0.11 -0.2
952,148 + CCNA_00873 0.14 +1.0
952,148 + CCNA_00873 0.14 +0.1
952,148 + CCNA_00873 0.14 -0.0
952,166 - CCNA_00873 0.16 +0.4
952,205 + CCNA_00873 0.21 -0.1
952,222 - CCNA_00873 0.23 -0.6
952,248 + CCNA_00873 0.26 +0.2
952,288 + CCNA_00873 0.31 -0.8
952,297 - CCNA_00873 0.33 -0.1
952,376 + CCNA_00873 0.42 -0.7
952,378 + CCNA_00873 0.43 -0.7
952,378 + CCNA_00873 0.43 -0.5
952,384 + CCNA_00873 0.43 -0.7
952,399 - CCNA_00873 0.45 -0.8
952,424 - CCNA_00873 0.48 -0.7
952,429 - CCNA_00873 0.49 -0.1
952,463 - CCNA_00873 0.53 -0.6
952,504 + CCNA_00873 0.59 -1.2
952,504 + CCNA_00873 0.59 +0.2
952,504 + CCNA_00873 0.59 -1.8
952,512 - CCNA_00873 0.60 -0.6
952,512 - CCNA_00873 0.60 +1.0
952,512 - CCNA_00873 0.60 +0.3
952,550 - CCNA_00873 0.64 -0.0
952,555 - CCNA_00873 0.65 +0.3
952,555 - CCNA_00873 0.65 +0.3
952,559 + CCNA_00873 0.65 +1.5
952,560 + CCNA_00873 0.66 +0.8
952,560 + CCNA_00873 0.66 -3.1
952,560 + CCNA_00873 0.66 -0.2
952,560 + CCNA_00873 0.66 +0.2
952,560 + CCNA_00873 0.66 +2.6
952,560 + CCNA_00873 0.66 -0.2
952,567 - CCNA_00873 0.66 -0.1
952,568 - CCNA_00873 0.67 +1.6
952,568 - CCNA_00873 0.67 -0.5
952,568 - CCNA_00873 0.67 +0.6
952,568 - CCNA_00873 0.67 -0.8
952,568 - CCNA_00873 0.67 -1.5
952,568 - CCNA_00873 0.67 -1.5
952,568 - CCNA_00873 0.67 -0.3
952,572 + CCNA_00873 0.67 -0.8
952,579 + CCNA_00873 0.68 +0.7
952,579 - CCNA_00873 0.68 -0.9
952,584 + CCNA_00873 0.69 -1.0
952,608 + CCNA_00873 0.72 -0.5
952,608 + CCNA_00873 0.72 -0.5
952,619 + CCNA_00873 0.73 -0.0
952,621 - CCNA_00873 0.73 -0.1
952,621 - CCNA_00873 0.73 -0.8
952,671 - CCNA_00873 0.79 +0.7
952,694 + CCNA_00873 0.82 -0.8
952,699 + CCNA_00873 0.83 -0.4
952,699 + CCNA_00873 0.83 +0.1
952,702 - CCNA_00873 0.83 +0.1
952,707 - CCNA_00873 0.84 +0.2

Or see this region's nucleotide sequence