Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00789

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00788 and CCNA_00789 are separated by 2 nucleotidesCCNA_00789 and CCNA_00790 are separated by 175 nucleotidesCCNA_00790 and CCNA_03939 are separated by 318 nucleotides CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870 _00788 CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523 _00789 CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076 _00790 CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685 _03939 Position (kb) 852 853 854Strain fitness (log2 ratio) -2 -1 0 1 2at 851.873 kb on - strand, within CCNA_00788at 851.893 kb on + strand, within CCNA_00788at 851.896 kb on - strand, within CCNA_00788at 851.898 kb on + strand, within CCNA_00788at 851.898 kb on + strand, within CCNA_00788at 851.917 kb on + strand, within CCNA_00788at 851.919 kb on + strand, within CCNA_00788at 851.927 kb on - strand, within CCNA_00788at 851.953 kb on + strand, within CCNA_00788at 851.961 kb on - strand, within CCNA_00788at 851.961 kb on - strand, within CCNA_00788at 851.961 kb on - strand, within CCNA_00788at 851.989 kb on - strand, within CCNA_00788at 852.000 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.031 kb on - strand, within CCNA_00788at 852.031 kb on - strand, within CCNA_00788at 852.031 kb on - strand, within CCNA_00788at 852.031 kb on - strand, within CCNA_00788at 852.031 kb on - strand, within CCNA_00788at 852.033 kb on + strand, within CCNA_00788at 852.052 kb on + strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.093 kb on - strand, within CCNA_00788at 852.108 kb on - strand, within CCNA_00788at 852.152 kb on - strand, within CCNA_00788at 852.245 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.289 kb on - strand, within CCNA_00788at 852.307 kb on + strand, within CCNA_00788at 852.312 kb on + strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.321 kb on - strand, within CCNA_00788at 852.327 kb on - strand, within CCNA_00788at 852.327 kb on - strand, within CCNA_00788at 852.327 kb on - strand, within CCNA_00788at 852.367 kb on + strand, within CCNA_00788at 852.368 kb on - strand, within CCNA_00788at 852.382 kb on + strand, within CCNA_00788at 852.387 kb on + strand, within CCNA_00788at 852.433 kb on - strand, within CCNA_00788at 852.438 kb on - strand, within CCNA_00788at 852.457 kb on - strand, within CCNA_00788at 852.466 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.506 kb on - strand, within CCNA_00788at 852.506 kb on - strand, within CCNA_00788at 852.506 kb on - strand, within CCNA_00788at 852.555 kb on - strand, within CCNA_00788at 852.568 kb on + strand, within CCNA_00788at 852.570 kb on - strand, within CCNA_00788at 852.574 kb on + strand, within CCNA_00788at 852.576 kb on - strand, within CCNA_00788at 852.621 kb on + strand, within CCNA_00788at 852.633 kb on + strand, within CCNA_00788at 852.636 kb on - strand, within CCNA_00788at 852.710 kb on - strand, within CCNA_00788at 852.714 kb on + strand, within CCNA_00788at 852.714 kb on + strand, within CCNA_00788at 852.765 kb on + strandat 852.800 kb on - strandat 852.838 kb on + strandat 852.846 kb on - strandat 852.866 kb on - strandat 852.939 kb on + strand, within CCNA_00789at 852.963 kb on + strand, within CCNA_00789at 852.995 kb on + strand, within CCNA_00789at 853.024 kb on - strand, within CCNA_00789at 853.095 kb on + strand, within CCNA_00789at 853.098 kb on - strand, within CCNA_00789at 853.098 kb on - strand, within CCNA_00789at 853.103 kb on - strand, within CCNA_00789at 853.103 kb on - strand, within CCNA_00789at 853.103 kb on - strand, within CCNA_00789at 853.143 kb on + strand, within CCNA_00789at 853.164 kb on + strand, within CCNA_00789at 853.189 kb on - strand, within CCNA_00789at 853.209 kb on + strand, within CCNA_00789at 853.286 kb on + strand, within CCNA_00789at 853.300 kb on - strand, within CCNA_00789at 853.402 kb on + strand, within CCNA_00789at 853.419 kb on + strand, within CCNA_00789at 853.459 kb on - strandat 853.459 kb on - strandat 853.461 kb on + strandat 853.461 kb on + strandat 853.461 kb on + strandat 853.471 kb on + strandat 853.474 kb on - strandat 853.482 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.598 kb on - strandat 853.598 kb on - strandat 853.600 kb on - strandat 853.607 kb on + strandat 853.607 kb on + strandat 853.658 kb on + strandat 853.677 kb on + strandat 853.709 kb on + strandat 853.725 kb on + strandat 853.764 kb on + strand, within CCNA_00790at 853.766 kb on + strand, within CCNA_00790at 853.766 kb on - strand, within CCNA_00790at 853.771 kb on + strand, within CCNA_00790at 853.779 kb on - strand, within CCNA_00790at 853.779 kb on - strand, within CCNA_00790at 853.809 kb on + strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.850 kb on - strand, within CCNA_00790at 853.850 kb on - strand, within CCNA_00790at 853.856 kb on + strand, within CCNA_00790at 853.912 kb on + strand, within CCNA_00790at 853.912 kb on - strand, within CCNA_00790at 853.922 kb on - strand, within CCNA_00790at 853.964 kb on - strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 853.996 kb on - strand, within CCNA_00790at 854.006 kb on - strand, within CCNA_00790at 854.021 kb on - strand, within CCNA_00790at 854.038 kb on - strand, within CCNA_00790at 854.078 kb on - strandat 854.078 kb on - strandat 854.245 kb on - strandat 854.270 kb on - strandat 854.270 kb on - strandat 854.305 kb on - strandat 854.314 kb on + strandat 854.326 kb on + strandat 854.326 kb on + strandat 854.331 kb on + strandat 854.331 kb on + strandat 854.333 kb on + strandat 854.334 kb on - strandat 854.334 kb on - strandat 854.334 kb on - strandat 854.344 kb on + strandat 854.344 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.357 kb on - strandat 854.362 kb on - strandat 854.383 kb on - strandat 854.389 kb on - strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.429 kb on + strand, within CCNA_03939at 854.429 kb on + strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.439 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939at 854.504 kb on + strand, within CCNA_03939at 854.504 kb on + strand, within CCNA_03939at 854.511 kb on + strand, within CCNA_03939at 854.517 kb on - strand, within CCNA_03939at 854.519 kb on - strand, within CCNA_03939

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
remove
851,873 - CCNA_00788 0.24 -0.3
851,893 + CCNA_00788 0.26 +0.0
851,896 - CCNA_00788 0.26 +0.3
851,898 + CCNA_00788 0.26 -1.5
851,898 + CCNA_00788 0.26 +0.4
851,917 + CCNA_00788 0.28 -0.2
851,919 + CCNA_00788 0.28 +0.6
851,927 - CCNA_00788 0.28 +0.3
851,953 + CCNA_00788 0.30 +0.4
851,961 - CCNA_00788 0.31 -0.2
851,961 - CCNA_00788 0.31 -1.3
851,961 - CCNA_00788 0.31 +0.2
851,989 - CCNA_00788 0.33 +1.1
852,000 + CCNA_00788 0.34 -0.8
852,023 + CCNA_00788 0.36 -0.8
852,023 + CCNA_00788 0.36 -0.4
852,023 + CCNA_00788 0.36 +1.0
852,031 - CCNA_00788 0.36 +0.5
852,031 - CCNA_00788 0.36 +1.0
852,031 - CCNA_00788 0.36 +0.8
852,031 - CCNA_00788 0.36 +0.7
852,031 - CCNA_00788 0.36 -0.0
852,033 + CCNA_00788 0.36 +1.2
852,052 + CCNA_00788 0.38 +0.0
852,080 + CCNA_00788 0.40 +0.8
852,080 + CCNA_00788 0.40 +0.2
852,093 - CCNA_00788 0.41 +2.0
852,108 - CCNA_00788 0.42 +0.9
852,152 - CCNA_00788 0.45 -0.6
852,245 + CCNA_00788 0.52 -0.7
852,258 + CCNA_00788 0.53 -0.5
852,258 + CCNA_00788 0.53 +0.6
852,258 + CCNA_00788 0.53 -0.4
852,289 - CCNA_00788 0.56 +0.3
852,307 + CCNA_00788 0.57 -0.6
852,312 + CCNA_00788 0.58 +0.2
852,315 - CCNA_00788 0.58 +0.0
852,321 - CCNA_00788 0.58 +0.5
852,327 - CCNA_00788 0.59 -0.8
852,327 - CCNA_00788 0.59 +2.2
852,327 - CCNA_00788 0.59 +0.6
852,367 + CCNA_00788 0.62 -0.9
852,368 - CCNA_00788 0.62 +0.7
852,382 + CCNA_00788 0.63 -0.3
852,387 + CCNA_00788 0.63 +0.9
852,433 - CCNA_00788 0.67 +0.3
852,438 - CCNA_00788 0.67 -0.4
852,457 - CCNA_00788 0.69 +0.2
852,466 + CCNA_00788 0.69 +0.4
852,498 + CCNA_00788 0.72 +0.2
852,506 - CCNA_00788 0.72 +0.6
852,506 - CCNA_00788 0.72 -1.0
852,506 - CCNA_00788 0.72 +0.6
852,555 - CCNA_00788 0.76 -0.8
852,568 + CCNA_00788 0.77 -0.3
852,570 - CCNA_00788 0.77 -0.1
852,574 + CCNA_00788 0.77 -2.1
852,576 - CCNA_00788 0.78 +0.2
852,621 + CCNA_00788 0.81 -0.3
852,633 + CCNA_00788 0.82 +0.7
852,636 - CCNA_00788 0.82 -0.0
852,710 - CCNA_00788 0.88 -0.5
852,714 + CCNA_00788 0.88 +0.2
852,714 + CCNA_00788 0.88 +0.6
852,765 + +0.2
852,800 - +0.8
852,838 + -0.3
852,846 - -0.9
852,866 - +0.2
852,939 + CCNA_00789 0.10 -2.6
852,963 + CCNA_00789 0.14 +0.3
852,995 + CCNA_00789 0.19 +0.0
853,024 - CCNA_00789 0.23 +0.2
853,095 + CCNA_00789 0.34 +0.0
853,098 - CCNA_00789 0.35 -0.7
853,098 - CCNA_00789 0.35 +2.2
853,103 - CCNA_00789 0.35 -0.2
853,103 - CCNA_00789 0.35 +0.4
853,103 - CCNA_00789 0.35 +0.1
853,143 + CCNA_00789 0.41 +0.9
853,164 + CCNA_00789 0.45 +0.3
853,189 - CCNA_00789 0.49 -0.4
853,209 + CCNA_00789 0.52 -0.8
853,286 + CCNA_00789 0.63 +1.5
853,300 - CCNA_00789 0.66 +0.4
853,402 + CCNA_00789 0.81 +0.1
853,419 + CCNA_00789 0.84 -1.2
853,459 - -0.2
853,459 - -0.6
853,461 + -0.3
853,461 + -1.9
853,461 + +0.1
853,471 + -1.3
853,474 - +0.8
853,482 + -0.4
853,590 + -0.4
853,590 + +0.9
853,590 + -0.5
853,590 + -1.4
853,590 + +0.0
853,598 - -0.6
853,598 - -1.9
853,600 - -2.6
853,607 + +0.2
853,607 + +0.1
853,658 + -0.2
853,677 + +0.6
853,709 + +0.5
853,725 + -0.1
853,764 + CCNA_00790 0.17 -0.0
853,766 + CCNA_00790 0.18 -0.4
853,766 - CCNA_00790 0.18 +0.5
853,771 + CCNA_00790 0.19 +0.5
853,779 - CCNA_00790 0.21 +0.6
853,779 - CCNA_00790 0.21 -0.8
853,809 + CCNA_00790 0.29 +0.1
853,819 - CCNA_00790 0.32 -0.3
853,819 - CCNA_00790 0.32 -0.2
853,850 - CCNA_00790 0.40 -0.2
853,850 - CCNA_00790 0.40 +0.5
853,856 + CCNA_00790 0.42 -0.0
853,912 + CCNA_00790 0.56 -0.2
853,912 - CCNA_00790 0.56 +0.0
853,922 - CCNA_00790 0.59 +0.1
853,964 - CCNA_00790 0.70 -0.6
853,988 + CCNA_00790 0.76 +0.0
853,996 - CCNA_00790 0.79 +0.1
854,006 - CCNA_00790 0.81 -1.6
854,021 - CCNA_00790 0.85 -1.7
854,038 - CCNA_00790 0.90 -2.1
854,078 - -1.7
854,078 - -0.1
854,245 - -1.8
854,270 - +0.3
854,270 - +0.1
854,305 - +0.3
854,314 + -0.3
854,326 + -0.6
854,326 + -0.5
854,331 + -0.5
854,331 + +0.3
854,333 + -1.1
854,334 - -1.5
854,334 - -0.0
854,334 - -0.2
854,344 + +0.4
854,344 + +0.8
854,349 + -1.5
854,349 + -0.2
854,349 + -0.3
854,349 + -0.2
854,349 + -1.0
854,357 - -0.1
854,362 - +0.8
854,383 - -0.8
854,389 - -0.9
854,405 + -0.8
854,405 + -0.6
854,405 + +0.2
854,405 + -0.4
854,405 + -0.4
854,405 + -0.2
854,405 + +0.0
854,413 - +0.1
854,413 - -0.9
854,413 - -0.2
854,413 - +0.4
854,429 + CCNA_03939 0.12 -1.2
854,429 + CCNA_03939 0.12 -0.2
854,437 - CCNA_03939 0.14 +0.3
854,439 + CCNA_03939 0.15 +0.0
854,499 + CCNA_03939 0.36 -0.9
854,499 + CCNA_03939 0.36 -0.0
854,499 + CCNA_03939 0.36 -0.5
854,504 + CCNA_03939 0.37 -0.8
854,504 + CCNA_03939 0.37 -0.4
854,511 + CCNA_03939 0.40 -1.1
854,517 - CCNA_03939 0.42 +0.4
854,519 - CCNA_03939 0.43 -0.0

Or see this region's nucleotide sequence