Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00667

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00665 and CCNA_00666 overlap by 4 nucleotidesCCNA_00666 and CCNA_00667 are separated by 61 nucleotidesCCNA_00667 and CCNA_00668 are separated by 10 nucleotides CCNA_00665: CCNA_00665 - GAF-family sensor histidine kinase, at 721,949 to 723,094 _00665 CCNA_00666: CCNA_00666 - response regulator receiver domain protein, at 723,091 to 723,444 _00666 CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690 _00667 CCNA_00668: CCNA_00668 - capsular polysaccharide biosynthesis protein, at 724,701 to 725,753 _00668 Position (kb) 723 724 725Strain fitness (log2 ratio) -2 -1 0 1 2at 722.545 kb on + strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.563 kb on - strand, within CCNA_00665at 722.563 kb on - strand, within CCNA_00665at 722.564 kb on - strand, within CCNA_00665at 722.570 kb on - strand, within CCNA_00665at 722.592 kb on + strand, within CCNA_00665at 722.690 kb on - strand, within CCNA_00665at 722.738 kb on + strand, within CCNA_00665at 722.739 kb on - strand, within CCNA_00665at 722.746 kb on - strand, within CCNA_00665at 722.746 kb on - strand, within CCNA_00665at 722.826 kb on + strand, within CCNA_00665at 722.832 kb on - strand, within CCNA_00665at 722.834 kb on + strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.852 kb on - strand, within CCNA_00665at 722.897 kb on - strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.975 kb on - strand, within CCNA_00665at 722.978 kb on + strand, within CCNA_00665at 722.978 kb on + strand, within CCNA_00665at 722.998 kb on + strandat 723.046 kb on - strandat 723.046 kb on - strandat 723.083 kb on - strandat 723.098 kb on - strandat 723.098 kb on - strandat 723.105 kb on + strandat 723.120 kb on + strandat 723.135 kb on + strand, within CCNA_00666at 723.159 kb on - strand, within CCNA_00666at 723.169 kb on + strand, within CCNA_00666at 723.169 kb on - strand, within CCNA_00666at 723.170 kb on + strand, within CCNA_00666at 723.170 kb on + strand, within CCNA_00666at 723.178 kb on - strand, within CCNA_00666at 723.178 kb on - strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.212 kb on + strand, within CCNA_00666at 723.216 kb on - strand, within CCNA_00666at 723.220 kb on - strand, within CCNA_00666at 723.221 kb on - strand, within CCNA_00666at 723.221 kb on - strand, within CCNA_00666at 723.221 kb on - strand, within CCNA_00666at 723.239 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.293 kb on + strand, within CCNA_00666at 723.306 kb on - strand, within CCNA_00666at 723.316 kb on - strand, within CCNA_00666at 723.361 kb on + strand, within CCNA_00666at 723.371 kb on - strand, within CCNA_00666at 723.373 kb on + strand, within CCNA_00666at 723.393 kb on + strand, within CCNA_00666at 723.439 kb on + strandat 723.447 kb on + strandat 723.447 kb on - strandat 723.448 kb on + strandat 723.453 kb on + strandat 723.456 kb on - strandat 723.458 kb on + strandat 723.459 kb on + strandat 723.466 kb on - strandat 723.478 kb on + strandat 723.486 kb on - strandat 723.624 kb on - strandat 723.652 kb on - strand, within CCNA_00667at 723.705 kb on - strand, within CCNA_00667at 723.752 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.802 kb on + strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.861 kb on + strand, within CCNA_00667at 723.883 kb on + strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.908 kb on + strand, within CCNA_00667at 723.943 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.952 kb on + strand, within CCNA_00667at 723.953 kb on - strand, within CCNA_00667at 723.976 kb on + strand, within CCNA_00667at 723.999 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.024 kb on - strand, within CCNA_00667at 724.103 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.177 kb on + strand, within CCNA_00667at 724.179 kb on + strand, within CCNA_00667at 724.194 kb on + strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.220 kb on + strand, within CCNA_00667at 724.220 kb on + strand, within CCNA_00667at 724.255 kb on + strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.263 kb on - strand, within CCNA_00667at 724.276 kb on + strand, within CCNA_00667at 724.383 kb on + strand, within CCNA_00667at 724.388 kb on + strand, within CCNA_00667at 724.419 kb on + strand, within CCNA_00667at 724.419 kb on + strand, within CCNA_00667at 724.448 kb on - strand, within CCNA_00667at 724.521 kb on + strand, within CCNA_00667at 724.526 kb on - strand, within CCNA_00667at 724.622 kb on + strandat 724.631 kb on + strandat 724.634 kb on - strandat 724.649 kb on - strandat 724.705 kb on - strandat 724.705 kb on - strandat 724.780 kb on + strandat 724.785 kb on - strandat 724.840 kb on + strand, within CCNA_00668at 724.876 kb on - strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.956 kb on - strand, within CCNA_00668at 724.977 kb on - strand, within CCNA_00668at 725.032 kb on + strand, within CCNA_00668at 725.040 kb on - strand, within CCNA_00668at 725.139 kb on - strand, within CCNA_00668at 725.141 kb on + strand, within CCNA_00668at 725.171 kb on + strand, within CCNA_00668at 725.198 kb on - strand, within CCNA_00668at 725.229 kb on + strand, within CCNA_00668at 725.247 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.358 kb on - strand, within CCNA_00668at 725.359 kb on + strand, within CCNA_00668at 725.367 kb on - strand, within CCNA_00668at 725.382 kb on + strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.476 kb on - strand, within CCNA_00668at 725.551 kb on + strand, within CCNA_00668at 725.564 kb on - strand, within CCNA_00668at 725.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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722,545 + CCNA_00665 0.52 -0.4
722,556 + CCNA_00665 0.53 +0.2
722,556 + CCNA_00665 0.53 -1.2
722,563 - CCNA_00665 0.54 -0.8
722,563 - CCNA_00665 0.54 +0.7
722,564 - CCNA_00665 0.54 +1.8
722,570 - CCNA_00665 0.54 -0.7
722,592 + CCNA_00665 0.56 -0.5
722,690 - CCNA_00665 0.65 +0.6
722,738 + CCNA_00665 0.69 -0.4
722,739 - CCNA_00665 0.69 -1.0
722,746 - CCNA_00665 0.70 -0.9
722,746 - CCNA_00665 0.70 -0.8
722,826 + CCNA_00665 0.77 +0.3
722,832 - CCNA_00665 0.77 -0.5
722,834 + CCNA_00665 0.77 +0.0
722,843 + CCNA_00665 0.78 -1.0
722,843 + CCNA_00665 0.78 +0.5
722,843 + CCNA_00665 0.78 +0.6
722,851 - CCNA_00665 0.79 -0.8
722,851 - CCNA_00665 0.79 +0.2
722,851 - CCNA_00665 0.79 +0.5
722,852 - CCNA_00665 0.79 +0.5
722,897 - CCNA_00665 0.83 -0.7
722,923 + CCNA_00665 0.85 +0.3
722,931 - CCNA_00665 0.86 +0.7
722,975 - CCNA_00665 0.90 -0.1
722,978 + CCNA_00665 0.90 +1.0
722,978 + CCNA_00665 0.90 +0.2
722,998 + +0.8
723,046 - -0.3
723,046 - -0.1
723,083 - +0.3
723,098 - -0.1
723,098 - +0.7
723,105 + +0.6
723,120 + -0.7
723,135 + CCNA_00666 0.12 +0.7
723,159 - CCNA_00666 0.19 +0.3
723,169 + CCNA_00666 0.22 -0.5
723,169 - CCNA_00666 0.22 -0.9
723,170 + CCNA_00666 0.22 -0.1
723,170 + CCNA_00666 0.22 +0.7
723,178 - CCNA_00666 0.25 +0.3
723,178 - CCNA_00666 0.25 -0.7
723,208 + CCNA_00666 0.33 +0.4
723,212 + CCNA_00666 0.34 -0.4
723,216 - CCNA_00666 0.35 -0.6
723,220 - CCNA_00666 0.36 -0.1
723,221 - CCNA_00666 0.37 -0.1
723,221 - CCNA_00666 0.37 -0.3
723,221 - CCNA_00666 0.37 +0.2
723,239 - CCNA_00666 0.42 -1.2
723,258 - CCNA_00666 0.47 +0.5
723,258 - CCNA_00666 0.47 +0.4
723,293 + CCNA_00666 0.57 -0.6
723,306 - CCNA_00666 0.61 -0.2
723,316 - CCNA_00666 0.64 -0.9
723,361 + CCNA_00666 0.76 +0.7
723,371 - CCNA_00666 0.79 -2.3
723,373 + CCNA_00666 0.80 +0.2
723,393 + CCNA_00666 0.85 -0.5
723,439 + -0.4
723,447 + +0.3
723,447 - +0.8
723,448 + +0.2
723,453 + +1.7
723,456 - +1.9
723,458 + +0.5
723,459 + -0.1
723,466 - -1.6
723,478 + -0.1
723,486 - +0.1
723,624 - +0.1
723,652 - CCNA_00667 0.12 -0.4
723,705 - CCNA_00667 0.17 +1.3
723,752 + CCNA_00667 0.21 -1.2
723,797 + CCNA_00667 0.25 -0.7
723,797 + CCNA_00667 0.25 -0.6
723,797 + CCNA_00667 0.25 +0.1
723,797 + CCNA_00667 0.25 +0.3
723,802 + CCNA_00667 0.25 -0.3
723,805 - CCNA_00667 0.25 +1.0
723,805 - CCNA_00667 0.25 -0.9
723,861 + CCNA_00667 0.30 -1.7
723,883 + CCNA_00667 0.32 -1.6
723,889 + CCNA_00667 0.32 +0.3
723,889 + CCNA_00667 0.32 +0.1
723,908 + CCNA_00667 0.34 -0.8
723,943 + CCNA_00667 0.37 -0.1
723,950 + CCNA_00667 0.37 -0.9
723,952 + CCNA_00667 0.38 +0.7
723,953 - CCNA_00667 0.38 -1.1
723,976 + CCNA_00667 0.40 +0.8
723,999 + CCNA_00667 0.42 +0.7
724,016 + CCNA_00667 0.43 +0.7
724,016 + CCNA_00667 0.43 -0.3
724,016 + CCNA_00667 0.43 -0.7
724,016 + CCNA_00667 0.43 -0.2
724,024 - CCNA_00667 0.44 -0.7
724,103 + CCNA_00667 0.50 -0.5
724,126 + CCNA_00667 0.52 -0.5
724,126 + CCNA_00667 0.52 -0.7
724,134 - CCNA_00667 0.53 -2.0
724,177 + CCNA_00667 0.57 -1.3
724,179 + CCNA_00667 0.57 -0.6
724,194 + CCNA_00667 0.58 -1.9
724,202 - CCNA_00667 0.59 -0.8
724,202 - CCNA_00667 0.59 -0.0
724,220 + CCNA_00667 0.60 -1.2
724,220 + CCNA_00667 0.60 +1.0
724,255 + CCNA_00667 0.63 +0.7
724,263 - CCNA_00667 0.64 +0.3
724,263 - CCNA_00667 0.64 +0.5
724,263 - CCNA_00667 0.64 +0.3
724,276 + CCNA_00667 0.65 -2.0
724,383 + CCNA_00667 0.74 -0.2
724,388 + CCNA_00667 0.74 -0.3
724,419 + CCNA_00667 0.77 -0.5
724,419 + CCNA_00667 0.77 -1.7
724,448 - CCNA_00667 0.79 +1.2
724,521 + CCNA_00667 0.86 +0.1
724,526 - CCNA_00667 0.86 +0.7
724,622 + -0.7
724,631 + +0.3
724,634 - -1.6
724,649 - -0.1
724,705 - -1.9
724,705 - -0.4
724,780 + +0.8
724,785 - -0.0
724,840 + CCNA_00668 0.13 -0.7
724,876 - CCNA_00668 0.17 +0.5
724,948 + CCNA_00668 0.23 -0.3
724,948 + CCNA_00668 0.23 -0.2
724,956 - CCNA_00668 0.24 -1.0
724,977 - CCNA_00668 0.26 +0.1
725,032 + CCNA_00668 0.31 -1.0
725,040 - CCNA_00668 0.32 +0.3
725,139 - CCNA_00668 0.42 -0.9
725,141 + CCNA_00668 0.42 -1.3
725,171 + CCNA_00668 0.45 +0.7
725,198 - CCNA_00668 0.47 +0.2
725,229 + CCNA_00668 0.50 -0.3
725,247 - CCNA_00668 0.52 -0.2
725,259 - CCNA_00668 0.53 -0.3
725,259 - CCNA_00668 0.53 -1.3
725,259 - CCNA_00668 0.53 -0.1
725,358 - CCNA_00668 0.62 -0.8
725,359 + CCNA_00668 0.62 -0.2
725,367 - CCNA_00668 0.63 +0.1
725,382 + CCNA_00668 0.65 -0.5
725,466 - CCNA_00668 0.73 +0.5
725,466 - CCNA_00668 0.73 -0.1
725,476 - CCNA_00668 0.74 -1.4
725,551 + CCNA_00668 0.81 -2.7
725,564 - CCNA_00668 0.82 +0.4
725,664 - +1.1

Or see this region's nucleotide sequence