Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00628

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00626 and CCNA_00627 are separated by 78 nucleotidesCCNA_00627 and CCNA_00628 are separated by 5 nucleotidesCCNA_00628 and CCNA_00629 are separated by 591 nucleotides CCNA_00626: CCNA_00626 - methyl-accepting chemotaxis protein, at 670,929 to 672,842 _00626 CCNA_00627: CCNA_00627 - hypothetical protein, at 672,921 to 673,382 _00627 CCNA_00628: CCNA_00628 - chemotaxis protein cheY, at 673,388 to 673,771 _00628 CCNA_00629: CCNA_00629 - methyl-accepting chemotaxis protein, at 674,363 to 676,249 _00629 Position (kb) 673 674Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 672.418 kb on + strand, within CCNA_00626at 672.426 kb on - strand, within CCNA_00626at 672.426 kb on - strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.504 kb on - strand, within CCNA_00626at 672.528 kb on + strand, within CCNA_00626at 672.533 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.565 kb on + strand, within CCNA_00626at 672.568 kb on + strand, within CCNA_00626at 672.578 kb on - strand, within CCNA_00626at 672.614 kb on + strand, within CCNA_00626at 672.635 kb on - strand, within CCNA_00626at 672.640 kb on + strand, within CCNA_00626at 672.644 kb on + strand, within CCNA_00626at 672.650 kb on - strand, within CCNA_00626at 672.676 kb on + strandat 672.682 kb on + strandat 672.682 kb on + strandat 672.690 kb on - strandat 672.704 kb on + strandat 672.712 kb on - strandat 672.719 kb on + strandat 672.729 kb on + strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.738 kb on - strandat 672.738 kb on - strandat 672.740 kb on + strandat 672.740 kb on + strandat 672.743 kb on - strandat 672.748 kb on - strandat 672.759 kb on - strandat 672.759 kb on - strandat 672.763 kb on - strandat 672.763 kb on - strandat 672.788 kb on + strandat 672.791 kb on - strandat 672.791 kb on - strandat 672.796 kb on - strandat 672.913 kb on + strandat 672.919 kb on - strandat 672.921 kb on - strandat 672.954 kb on - strandat 672.958 kb on - strandat 672.985 kb on + strand, within CCNA_00627at 672.992 kb on + strand, within CCNA_00627at 672.998 kb on - strand, within CCNA_00627at 673.015 kb on - strand, within CCNA_00627at 673.032 kb on - strand, within CCNA_00627at 673.084 kb on - strand, within CCNA_00627at 673.084 kb on - strand, within CCNA_00627at 673.087 kb on + strand, within CCNA_00627at 673.096 kb on + strand, within CCNA_00627at 673.126 kb on - strand, within CCNA_00627at 673.128 kb on + strand, within CCNA_00627at 673.152 kb on - strand, within CCNA_00627at 673.177 kb on - strand, within CCNA_00627at 673.255 kb on + strand, within CCNA_00627at 673.265 kb on + strand, within CCNA_00627at 673.273 kb on - strand, within CCNA_00627at 673.303 kb on - strand, within CCNA_00627at 673.365 kb on - strandat 673.437 kb on - strand, within CCNA_00628at 673.442 kb on - strand, within CCNA_00628at 673.444 kb on - strand, within CCNA_00628at 673.482 kb on - strand, within CCNA_00628at 673.490 kb on - strand, within CCNA_00628at 673.497 kb on + strand, within CCNA_00628at 673.498 kb on - strand, within CCNA_00628at 673.560 kb on + strand, within CCNA_00628at 673.568 kb on - strand, within CCNA_00628at 673.568 kb on - strand, within CCNA_00628at 673.570 kb on + strand, within CCNA_00628at 673.578 kb on - strand, within CCNA_00628at 673.640 kb on + strand, within CCNA_00628at 673.646 kb on + strand, within CCNA_00628at 673.653 kb on - strand, within CCNA_00628at 673.692 kb on - strand, within CCNA_00628at 673.694 kb on + strand, within CCNA_00628at 673.725 kb on + strand, within CCNA_00628at 673.884 kb on - strandat 673.894 kb on - strandat 674.114 kb on - strandat 674.202 kb on - strandat 674.250 kb on + strandat 674.250 kb on + strandat 674.258 kb on - strandat 674.258 kb on - strandat 674.258 kb on - strandat 674.258 kb on - strandat 674.283 kb on + strandat 674.288 kb on + strandat 674.296 kb on + strandat 674.301 kb on + strandat 674.301 kb on + strandat 674.314 kb on + strandat 674.322 kb on - strandat 674.337 kb on + strandat 674.337 kb on + strandat 674.337 kb on + strandat 674.337 kb on + strandat 674.337 kb on + strandat 674.345 kb on - strandat 674.345 kb on - strandat 674.403 kb on - strandat 674.418 kb on - strandat 674.418 kb on - strandat 674.418 kb on - strandat 674.471 kb on - strandat 674.482 kb on + strandat 674.490 kb on - strandat 674.504 kb on - strandat 674.550 kb on - strandat 674.557 kb on + strand, within CCNA_00629at 674.560 kb on - strand, within CCNA_00629at 674.611 kb on - strand, within CCNA_00629at 674.674 kb on - strand, within CCNA_00629at 674.682 kb on + strand, within CCNA_00629at 674.716 kb on - strand, within CCNA_00629at 674.736 kb on + strand, within CCNA_00629at 674.736 kb on - strand, within CCNA_00629at 674.744 kb on - strand, within CCNA_00629at 674.744 kb on - strand, within CCNA_00629at 674.754 kb on + strand, within CCNA_00629at 674.759 kb on + strand, within CCNA_00629at 674.759 kb on + strand, within CCNA_00629at 674.770 kb on + strand, within CCNA_00629

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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672,418 + CCNA_00626 0.78 -1.2
672,426 - CCNA_00626 0.78 -0.8
672,426 - CCNA_00626 0.78 +0.3
672,440 + CCNA_00626 0.79 +0.6
672,440 + CCNA_00626 0.79 -0.1
672,440 + CCNA_00626 0.79 -1.6
672,440 + CCNA_00626 0.79 -1.2
672,440 + CCNA_00626 0.79 -0.1
672,440 + CCNA_00626 0.79 -2.0
672,440 + CCNA_00626 0.79 -1.3
672,440 + CCNA_00626 0.79 -0.3
672,440 + CCNA_00626 0.79 -0.3
672,440 + CCNA_00626 0.79 -0.8
672,440 + CCNA_00626 0.79 +0.5
672,440 + CCNA_00626 0.79 +1.1
672,440 + CCNA_00626 0.79 -0.5
672,448 - CCNA_00626 0.79 -0.8
672,448 - CCNA_00626 0.79 -2.4
672,448 - CCNA_00626 0.79 +0.2
672,448 - CCNA_00626 0.79 -0.1
672,448 - CCNA_00626 0.79 -0.7
672,448 - CCNA_00626 0.79 +1.2
672,448 - CCNA_00626 0.79 +0.8
672,448 - CCNA_00626 0.79 +0.8
672,448 - CCNA_00626 0.79 +2.2
672,504 - CCNA_00626 0.82 -0.7
672,528 + CCNA_00626 0.84 -0.4
672,533 + CCNA_00626 0.84 -0.5
672,538 + CCNA_00626 0.84 -0.9
672,538 + CCNA_00626 0.84 +0.0
672,538 + CCNA_00626 0.84 +0.9
672,538 + CCNA_00626 0.84 +0.2
672,538 + CCNA_00626 0.84 -0.7
672,538 + CCNA_00626 0.84 +0.2
672,538 + CCNA_00626 0.84 -1.8
672,538 + CCNA_00626 0.84 -0.5
672,538 + CCNA_00626 0.84 -0.6
672,538 + CCNA_00626 0.84 -1.0
672,546 - CCNA_00626 0.84 -0.7
672,546 - CCNA_00626 0.84 -0.4
672,546 - CCNA_00626 0.84 -0.9
672,546 - CCNA_00626 0.84 +0.8
672,546 - CCNA_00626 0.84 +0.5
672,546 - CCNA_00626 0.84 -0.9
672,565 + CCNA_00626 0.85 -0.3
672,568 + CCNA_00626 0.86 -0.3
672,578 - CCNA_00626 0.86 -0.0
672,614 + CCNA_00626 0.88 -0.9
672,635 - CCNA_00626 0.89 -0.1
672,640 + CCNA_00626 0.89 +1.0
672,644 + CCNA_00626 0.90 +0.5
672,650 - CCNA_00626 0.90 -0.4
672,676 + -0.2
672,682 + +2.1
672,682 + -1.2
672,690 - -0.6
672,704 + +0.3
672,712 - -1.5
672,719 + -0.1
672,729 + -1.8
672,730 + -1.5
672,730 + +0.2
672,730 + +0.1
672,730 + +0.8
672,730 + +0.1
672,730 + -0.3
672,730 + -0.6
672,738 - +1.6
672,738 - +0.5
672,740 + +0.1
672,740 + +0.1
672,743 - +0.8
672,748 - -0.6
672,759 - -0.3
672,759 - +0.3
672,763 - +0.1
672,763 - -1.5
672,788 + -0.0
672,791 - +0.3
672,791 - +0.0
672,796 - -0.4
672,913 + -1.0
672,919 - -1.2
672,921 - -0.3
672,954 - -1.4
672,958 - +0.1
672,985 + CCNA_00627 0.14 +0.4
672,992 + CCNA_00627 0.15 +0.4
672,998 - CCNA_00627 0.17 -1.6
673,015 - CCNA_00627 0.20 -1.9
673,032 - CCNA_00627 0.24 +0.6
673,084 - CCNA_00627 0.35 +0.4
673,084 - CCNA_00627 0.35 +0.4
673,087 + CCNA_00627 0.36 -0.7
673,096 + CCNA_00627 0.38 +0.5
673,126 - CCNA_00627 0.44 -0.5
673,128 + CCNA_00627 0.45 -1.9
673,152 - CCNA_00627 0.50 +0.6
673,177 - CCNA_00627 0.55 +0.1
673,255 + CCNA_00627 0.72 -0.2
673,265 + CCNA_00627 0.74 -0.2
673,273 - CCNA_00627 0.76 +1.5
673,303 - CCNA_00627 0.83 +0.6
673,365 - +0.3
673,437 - CCNA_00628 0.13 -0.4
673,442 - CCNA_00628 0.14 -0.8
673,444 - CCNA_00628 0.15 -0.4
673,482 - CCNA_00628 0.24 -2.6
673,490 - CCNA_00628 0.27 -0.2
673,497 + CCNA_00628 0.28 -2.2
673,498 - CCNA_00628 0.29 +1.3
673,560 + CCNA_00628 0.45 -0.7
673,568 - CCNA_00628 0.47 +1.9
673,568 - CCNA_00628 0.47 -1.6
673,570 + CCNA_00628 0.47 -0.9
673,578 - CCNA_00628 0.49 -0.1
673,640 + CCNA_00628 0.66 -0.0
673,646 + CCNA_00628 0.67 +0.6
673,653 - CCNA_00628 0.69 -0.3
673,692 - CCNA_00628 0.79 +0.5
673,694 + CCNA_00628 0.80 -0.4
673,725 + CCNA_00628 0.88 -0.4
673,884 - -0.4
673,894 - -0.9
674,114 - -0.7
674,202 - +0.6
674,250 + +0.6
674,250 + -0.8
674,258 - -1.4
674,258 - -1.2
674,258 - -2.0
674,258 - -2.9
674,283 + +0.4
674,288 + -0.5
674,296 + -0.9
674,301 + -0.6
674,301 + -0.1
674,314 + -0.2
674,322 - -1.7
674,337 + -0.4
674,337 + -0.8
674,337 + -1.3
674,337 + +1.6
674,337 + +0.2
674,345 - -0.7
674,345 - +2.2
674,403 - +0.6
674,418 - -0.3
674,418 - -0.6
674,418 - -3.3
674,471 - -1.8
674,482 + -0.5
674,490 - -0.9
674,504 - -1.8
674,550 - -0.5
674,557 + CCNA_00629 0.10 -0.4
674,560 - CCNA_00629 0.10 -1.7
674,611 - CCNA_00629 0.13 -1.0
674,674 - CCNA_00629 0.16 +0.6
674,682 + CCNA_00629 0.17 +0.9
674,716 - CCNA_00629 0.19 -0.4
674,736 + CCNA_00629 0.20 +0.5
674,736 - CCNA_00629 0.20 -0.1
674,744 - CCNA_00629 0.20 -1.5
674,744 - CCNA_00629 0.20 +0.8
674,754 + CCNA_00629 0.21 +0.0
674,759 + CCNA_00629 0.21 -0.8
674,759 + CCNA_00629 0.21 -1.2
674,770 + CCNA_00629 0.22 +1.0

Or see this region's nucleotide sequence