Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00551

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00550 and CCNA_00551 are separated by 207 nucleotidesCCNA_00551 and CCNA_00552 are separated by 255 nucleotidesCCNA_00552 and CCNA_00553 overlap by 4 nucleotides CCNA_00550: CCNA_00550 - LacI-family transcriptional regulator, at 567,006 to 568,052 _00550 CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700 _00551 CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426 _00552 CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172 _00553 Position (kb) 568 569Strain fitness (log2 ratio) -2 -1 0 1 2at 567.260 kb on - strand, within CCNA_00550at 567.293 kb on - strand, within CCNA_00550at 567.356 kb on + strand, within CCNA_00550at 567.356 kb on + strand, within CCNA_00550at 567.359 kb on - strand, within CCNA_00550at 567.364 kb on - strand, within CCNA_00550at 567.369 kb on - strand, within CCNA_00550at 567.369 kb on - strand, within CCNA_00550at 567.369 kb on - strand, within CCNA_00550at 567.373 kb on - strand, within CCNA_00550at 567.385 kb on + strand, within CCNA_00550at 567.393 kb on - strand, within CCNA_00550at 567.393 kb on - strand, within CCNA_00550at 567.404 kb on + strand, within CCNA_00550at 567.406 kb on - strand, within CCNA_00550at 567.417 kb on + strand, within CCNA_00550at 567.425 kb on + strand, within CCNA_00550at 567.425 kb on + strand, within CCNA_00550at 567.425 kb on + strand, within CCNA_00550at 567.433 kb on - strand, within CCNA_00550at 567.448 kb on + strand, within CCNA_00550at 567.458 kb on + strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.478 kb on + strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.655 kb on - strand, within CCNA_00550at 567.667 kb on + strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.702 kb on - strand, within CCNA_00550at 567.712 kb on - strand, within CCNA_00550at 567.716 kb on + strand, within CCNA_00550at 567.716 kb on + strand, within CCNA_00550at 567.724 kb on + strand, within CCNA_00550at 567.724 kb on - strand, within CCNA_00550at 567.786 kb on + strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.803 kb on + strand, within CCNA_00550at 567.862 kb on + strand, within CCNA_00550at 567.870 kb on - strand, within CCNA_00550at 567.891 kb on + strand, within CCNA_00550at 567.910 kb on - strand, within CCNA_00550at 567.910 kb on - strand, within CCNA_00550at 567.944 kb on - strand, within CCNA_00550at 567.944 kb on - strand, within CCNA_00550at 567.953 kb on + strandat 568.003 kb on + strandat 568.016 kb on - strandat 568.067 kb on + strandat 568.122 kb on + strandat 568.132 kb on + strandat 568.186 kb on + strandat 568.233 kb on + strandat 568.241 kb on - strandat 568.246 kb on + strandat 568.269 kb on + strandat 568.292 kb on - strandat 568.305 kb on + strand, within CCNA_00551at 568.305 kb on + strand, within CCNA_00551at 568.311 kb on + strand, within CCNA_00551at 568.319 kb on - strand, within CCNA_00551at 568.321 kb on + strand, within CCNA_00551at 568.334 kb on - strand, within CCNA_00551at 568.340 kb on - strand, within CCNA_00551at 568.342 kb on + strand, within CCNA_00551at 568.361 kb on - strand, within CCNA_00551at 568.395 kb on + strand, within CCNA_00551at 568.402 kb on + strand, within CCNA_00551at 568.402 kb on + strand, within CCNA_00551at 568.403 kb on - strand, within CCNA_00551at 568.410 kb on - strand, within CCNA_00551at 568.450 kb on - strand, within CCNA_00551at 568.457 kb on + strand, within CCNA_00551at 568.495 kb on - strand, within CCNA_00551at 568.550 kb on + strand, within CCNA_00551at 568.558 kb on - strand, within CCNA_00551at 568.596 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.608 kb on + strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.633 kb on + strand, within CCNA_00551at 568.634 kb on - strand, within CCNA_00551at 568.691 kb on + strandat 568.691 kb on + strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.699 kb on - strandat 568.758 kb on - strandat 568.785 kb on + strandat 568.857 kb on - strandat 568.866 kb on + strandat 568.879 kb on - strandat 568.884 kb on + strandat 568.888 kb on + strandat 568.896 kb on - strandat 568.896 kb on - strandat 568.913 kb on + strandat 568.918 kb on + strandat 568.921 kb on - strandat 568.926 kb on - strandat 568.926 kb on - strandat 568.930 kb on + strandat 568.970 kb on - strandat 568.972 kb on + strandat 568.980 kb on - strandat 568.980 kb on - strandat 569.039 kb on + strand, within CCNA_00552at 569.042 kb on - strand, within CCNA_00552at 569.073 kb on + strand, within CCNA_00552at 569.080 kb on + strand, within CCNA_00552at 569.094 kb on - strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.117 kb on + strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.125 kb on - strand, within CCNA_00552at 569.129 kb on + strand, within CCNA_00552at 569.132 kb on + strand, within CCNA_00552at 569.137 kb on - strand, within CCNA_00552at 569.205 kb on + strand, within CCNA_00552at 569.205 kb on + strand, within CCNA_00552at 569.213 kb on - strand, within CCNA_00552at 569.226 kb on + strand, within CCNA_00552at 569.226 kb on + strand, within CCNA_00552at 569.234 kb on - strand, within CCNA_00552at 569.236 kb on - strand, within CCNA_00552at 569.238 kb on + strand, within CCNA_00552at 569.238 kb on + strand, within CCNA_00552at 569.241 kb on - strand, within CCNA_00552at 569.241 kb on - strand, within CCNA_00552at 569.267 kb on - strand, within CCNA_00552at 569.279 kb on - strand, within CCNA_00552at 569.334 kb on - strand, within CCNA_00552at 569.359 kb on - strand, within CCNA_00552at 569.396 kb on + strandat 569.402 kb on + strandat 569.404 kb on - strandat 569.404 kb on - strandat 569.404 kb on - strandat 569.410 kb on - strandat 569.428 kb on + strandat 569.436 kb on - strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.493 kb on - strandat 569.498 kb on - strand, within CCNA_00553at 569.508 kb on - strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.602 kb on + strand, within CCNA_00553at 569.626 kb on - strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.680 kb on - strand, within CCNA_00553

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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567,260 - CCNA_00550 0.24 -0.3
567,293 - CCNA_00550 0.27 -1.1
567,356 + CCNA_00550 0.33 -1.8
567,356 + CCNA_00550 0.33 +0.1
567,359 - CCNA_00550 0.34 +0.1
567,364 - CCNA_00550 0.34 +0.5
567,369 - CCNA_00550 0.35 +0.1
567,369 - CCNA_00550 0.35 +0.5
567,369 - CCNA_00550 0.35 -1.2
567,373 - CCNA_00550 0.35 +0.5
567,385 + CCNA_00550 0.36 -1.0
567,393 - CCNA_00550 0.37 +0.7
567,393 - CCNA_00550 0.37 +0.1
567,404 + CCNA_00550 0.38 +0.1
567,406 - CCNA_00550 0.38 -0.7
567,417 + CCNA_00550 0.39 +0.6
567,425 + CCNA_00550 0.40 +0.2
567,425 + CCNA_00550 0.40 +0.3
567,425 + CCNA_00550 0.40 -1.2
567,433 - CCNA_00550 0.41 +0.9
567,448 + CCNA_00550 0.42 +1.5
567,458 + CCNA_00550 0.43 -0.7
567,471 + CCNA_00550 0.44 +0.3
567,471 + CCNA_00550 0.44 +0.7
567,478 + CCNA_00550 0.45 +0.5
567,524 - CCNA_00550 0.49 -0.9
567,524 - CCNA_00550 0.49 -0.2
567,655 - CCNA_00550 0.62 +0.1
567,667 + CCNA_00550 0.63 +0.4
567,675 - CCNA_00550 0.64 -0.5
567,675 - CCNA_00550 0.64 -0.5
567,702 - CCNA_00550 0.66 -0.5
567,712 - CCNA_00550 0.67 +1.3
567,716 + CCNA_00550 0.68 +0.2
567,716 + CCNA_00550 0.68 +0.9
567,724 + CCNA_00550 0.69 +0.8
567,724 - CCNA_00550 0.69 -0.6
567,786 + CCNA_00550 0.74 -0.2
567,794 - CCNA_00550 0.75 +0.2
567,794 - CCNA_00550 0.75 -0.6
567,794 - CCNA_00550 0.75 -0.3
567,794 - CCNA_00550 0.75 +0.1
567,794 - CCNA_00550 0.75 -0.2
567,803 + CCNA_00550 0.76 -0.3
567,862 + CCNA_00550 0.82 +0.4
567,870 - CCNA_00550 0.83 -0.1
567,891 + CCNA_00550 0.85 +0.5
567,910 - CCNA_00550 0.86 -0.5
567,910 - CCNA_00550 0.86 -0.9
567,944 - CCNA_00550 0.90 -1.7
567,944 - CCNA_00550 0.90 +0.3
567,953 + -0.5
568,003 + +0.2
568,016 - +0.4
568,067 + -1.4
568,122 + -1.0
568,132 + +0.1
568,186 + +1.1
568,233 + -0.6
568,241 - +0.3
568,246 + +0.4
568,269 + +0.3
568,292 - +0.6
568,305 + CCNA_00551 0.10 -1.6
568,305 + CCNA_00551 0.10 -0.4
568,311 + CCNA_00551 0.12 -0.3
568,319 - CCNA_00551 0.13 +1.2
568,321 + CCNA_00551 0.14 +0.2
568,334 - CCNA_00551 0.17 -0.7
568,340 - CCNA_00551 0.18 +0.1
568,342 + CCNA_00551 0.19 -1.1
568,361 - CCNA_00551 0.23 +0.2
568,395 + CCNA_00551 0.31 -1.5
568,402 + CCNA_00551 0.32 -0.2
568,402 + CCNA_00551 0.32 -0.2
568,403 - CCNA_00551 0.32 -0.2
568,410 - CCNA_00551 0.34 +1.0
568,450 - CCNA_00551 0.43 +0.6
568,457 + CCNA_00551 0.45 +2.2
568,495 - CCNA_00551 0.53 -0.7
568,550 + CCNA_00551 0.66 +0.1
568,558 - CCNA_00551 0.68 +0.4
568,596 + CCNA_00551 0.76 +0.0
568,601 + CCNA_00551 0.77 +1.6
568,601 + CCNA_00551 0.77 +0.1
568,601 + CCNA_00551 0.77 +1.0
568,601 + CCNA_00551 0.77 -0.3
568,601 + CCNA_00551 0.77 -0.8
568,608 + CCNA_00551 0.79 -1.3
568,609 - CCNA_00551 0.79 +0.7
568,609 - CCNA_00551 0.79 +0.2
568,609 - CCNA_00551 0.79 +0.4
568,609 - CCNA_00551 0.79 -1.0
568,609 - CCNA_00551 0.79 +0.2
568,609 - CCNA_00551 0.79 +0.3
568,633 + CCNA_00551 0.85 -0.0
568,634 - CCNA_00551 0.85 -0.4
568,691 + -0.1
568,691 + +0.4
568,699 - +0.1
568,699 - -0.0
568,699 - -0.2
568,699 - +0.6
568,699 - -0.3
568,699 - -0.6
568,758 - -0.7
568,785 + -0.1
568,857 - -0.1
568,866 + -0.4
568,879 - +1.2
568,884 + +0.7
568,888 + +0.4
568,896 - +0.0
568,896 - +0.4
568,913 + +0.4
568,918 + -0.3
568,921 - +0.3
568,926 - -0.1
568,926 - +0.9
568,930 + -1.0
568,970 - +0.2
568,972 + +0.3
568,980 - -0.1
568,980 - +0.2
569,039 + CCNA_00552 0.18 -0.4
569,042 - CCNA_00552 0.18 -0.3
569,073 + CCNA_00552 0.25 -1.1
569,080 + CCNA_00552 0.26 -0.0
569,094 - CCNA_00552 0.29 +0.3
569,117 + CCNA_00552 0.34 -0.1
569,117 + CCNA_00552 0.34 +1.4
569,117 + CCNA_00552 0.34 +1.1
569,125 - CCNA_00552 0.36 +1.0
569,125 - CCNA_00552 0.36 +0.1
569,125 - CCNA_00552 0.36 +0.4
569,129 + CCNA_00552 0.37 -0.7
569,132 + CCNA_00552 0.37 -0.6
569,137 - CCNA_00552 0.38 -1.0
569,205 + CCNA_00552 0.53 -0.9
569,205 + CCNA_00552 0.53 -0.6
569,213 - CCNA_00552 0.55 +1.2
569,226 + CCNA_00552 0.57 +0.5
569,226 + CCNA_00552 0.57 +0.8
569,234 - CCNA_00552 0.59 +0.9
569,236 - CCNA_00552 0.59 -1.7
569,238 + CCNA_00552 0.60 -0.1
569,238 + CCNA_00552 0.60 +0.7
569,241 - CCNA_00552 0.61 -0.7
569,241 - CCNA_00552 0.61 -0.3
569,267 - CCNA_00552 0.66 +0.7
569,279 - CCNA_00552 0.69 -0.7
569,334 - CCNA_00552 0.80 +0.1
569,359 - CCNA_00552 0.86 +0.5
569,396 + -0.1
569,402 + -0.5
569,404 - +0.3
569,404 - -0.4
569,404 - +0.9
569,410 - +0.2
569,428 + +0.4
569,436 - -0.1
569,438 + +1.0
569,438 + +0.7
569,438 + +0.4
569,438 + +0.8
569,438 + +0.1
569,446 - +0.7
569,446 - -0.2
569,446 - +0.5
569,446 - +0.3
569,446 - -0.0
569,446 - +0.2
569,493 - +0.3
569,498 - CCNA_00553 0.10 +0.3
569,508 - CCNA_00553 0.11 +0.6
569,589 + CCNA_00553 0.22 -1.1
569,589 + CCNA_00553 0.22 -0.0
569,589 + CCNA_00553 0.22 -1.3
569,589 + CCNA_00553 0.22 +0.4
569,597 - CCNA_00553 0.23 +0.1
569,597 - CCNA_00553 0.23 -0.2
569,597 - CCNA_00553 0.23 -0.7
569,602 + CCNA_00553 0.24 -1.5
569,626 - CCNA_00553 0.27 +0.1
569,655 + CCNA_00553 0.31 +0.0
569,655 + CCNA_00553 0.31 +0.0
569,663 - CCNA_00553 0.32 -0.2
569,680 - CCNA_00553 0.34 +0.5

Or see this region's nucleotide sequence