Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00543

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00540 and CCNA_03923 are separated by 130 nucleotidesCCNA_03923 and CCNA_00541 are separated by 63 nucleotidesCCNA_00541 and CCNA_00542 overlap by 4 nucleotidesCCNA_00542 and CCNA_00543 are separated by 48 nucleotidesCCNA_00543 and CCNA_00544 are separated by 215 nucleotides CCNA_00540: CCNA_00540 - coproporphyrinogen III oxidase, at 559,904 to 560,776 _00540 CCNA_03923: CCNA_03923 - hypothetical protein, at 560,907 to 560,972 _03923 CCNA_00541: CCNA_00541 - hypothetical protein, at 561,036 to 561,344 _00541 CCNA_00542: CCNA_00542 - hypothetical protein, at 561,341 to 561,664 _00542 CCNA_00543: CCNA_00543 - methyl-accepting chemotaxis protein, at 561,713 to 562,363 _00543 CCNA_00544: CCNA_00544 - acetyl-CoA acetyltransferase, at 562,579 to 563,754 _00544 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 560.779 kb on - strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.806 kb on + strandat 560.856 kb on + strandat 560.864 kb on - strandat 560.867 kb on + strandat 560.883 kb on + strandat 560.889 kb on - strandat 560.889 kb on - strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.933 kb on - strand, within CCNA_03923at 560.967 kb on + strandat 560.968 kb on + strandat 560.970 kb on - strandat 560.970 kb on - strandat 560.976 kb on - strandat 561.102 kb on + strand, within CCNA_00541at 561.126 kb on + strand, within CCNA_00541at 561.206 kb on + strand, within CCNA_00541at 561.214 kb on - strand, within CCNA_00541at 561.261 kb on - strand, within CCNA_00541at 561.296 kb on + strand, within CCNA_00541at 561.296 kb on + strand, within CCNA_00541at 561.321 kb on + strandat 561.339 kb on + strandat 561.347 kb on - strandat 561.365 kb on + strandat 561.395 kb on + strand, within CCNA_00542at 561.431 kb on + strand, within CCNA_00542at 561.431 kb on + strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.464 kb on + strand, within CCNA_00542at 561.464 kb on + strand, within CCNA_00542at 561.469 kb on + strand, within CCNA_00542at 561.472 kb on - strand, within CCNA_00542at 561.488 kb on - strand, within CCNA_00542at 561.488 kb on - strand, within CCNA_00542at 561.510 kb on - strand, within CCNA_00542at 561.518 kb on + strand, within CCNA_00542at 561.545 kb on - strand, within CCNA_00542at 561.571 kb on - strand, within CCNA_00542at 561.571 kb on - strand, within CCNA_00542at 561.587 kb on - strand, within CCNA_00542at 561.592 kb on - strand, within CCNA_00542at 561.627 kb on + strand, within CCNA_00542at 561.627 kb on + strand, within CCNA_00542at 561.627 kb on + strand, within CCNA_00542at 561.660 kb on + strandat 561.660 kb on + strandat 561.673 kb on - strandat 561.673 kb on - strandat 561.680 kb on - strandat 561.683 kb on + strandat 561.696 kb on - strandat 561.701 kb on + strandat 561.707 kb on + strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.719 kb on - strandat 561.719 kb on - strandat 561.720 kb on + strandat 561.753 kb on + strandat 561.817 kb on + strand, within CCNA_00543at 561.863 kb on + strand, within CCNA_00543at 561.911 kb on - strand, within CCNA_00543at 561.916 kb on - strand, within CCNA_00543at 561.916 kb on - strand, within CCNA_00543at 561.925 kb on - strand, within CCNA_00543at 561.930 kb on - strand, within CCNA_00543at 561.966 kb on + strand, within CCNA_00543at 561.971 kb on + strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 562.051 kb on - strand, within CCNA_00543at 562.111 kb on - strand, within CCNA_00543at 562.145 kb on + strand, within CCNA_00543at 562.145 kb on + strand, within CCNA_00543at 562.229 kb on - strand, within CCNA_00543at 562.239 kb on - strand, within CCNA_00543at 562.259 kb on - strand, within CCNA_00543at 562.378 kb on - strandat 562.435 kb on + strandat 562.435 kb on + strandat 562.444 kb on + strandat 562.452 kb on - strandat 562.452 kb on - strandat 562.452 kb on - strandat 562.452 kb on - strandat 562.455 kb on + strandat 562.491 kb on + strandat 562.553 kb on + strandat 562.553 kb on + strandat 562.555 kb on - strandat 562.561 kb on - strandat 562.615 kb on + strandat 562.625 kb on + strandat 562.629 kb on - strandat 562.663 kb on - strandat 562.665 kb on + strandat 562.665 kb on + strandat 562.668 kb on - strandat 562.668 kb on - strandat 562.672 kb on + strandat 562.673 kb on - strandat 562.673 kb on - strandat 562.745 kb on - strand, within CCNA_00544at 562.752 kb on + strand, within CCNA_00544at 562.770 kb on - strand, within CCNA_00544at 562.814 kb on - strand, within CCNA_00544at 562.818 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.852 kb on - strand, within CCNA_00544at 562.852 kb on - strand, within CCNA_00544at 562.857 kb on - strand, within CCNA_00544at 562.863 kb on + strand, within CCNA_00544at 562.881 kb on - strand, within CCNA_00544at 562.918 kb on + strand, within CCNA_00544at 562.926 kb on - strand, within CCNA_00544at 562.934 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.967 kb on + strand, within CCNA_00544at 562.971 kb on + strand, within CCNA_00544at 563.004 kb on + strand, within CCNA_00544at 563.028 kb on + strand, within CCNA_00544at 563.036 kb on - strand, within CCNA_00544at 563.047 kb on + strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.056 kb on + strand, within CCNA_00544at 563.064 kb on - strand, within CCNA_00544at 563.064 kb on - strand, within CCNA_00544at 563.064 kb on - strand, within CCNA_00544at 563.095 kb on + strand, within CCNA_00544at 563.103 kb on - strand, within CCNA_00544at 563.103 kb on - strand, within CCNA_00544at 563.103 kb on - strand, within CCNA_00544at 563.103 kb on - strand, within CCNA_00544at 563.119 kb on + strand, within CCNA_00544at 563.148 kb on - strand, within CCNA_00544at 563.183 kb on + strand, within CCNA_00544at 563.201 kb on - strand, within CCNA_00544at 563.207 kb on - strand, within CCNA_00544at 563.220 kb on + strand, within CCNA_00544at 563.229 kb on - strand, within CCNA_00544at 563.272 kb on - strand, within CCNA_00544at 563.280 kb on + strand, within CCNA_00544at 563.298 kb on - strand, within CCNA_00544at 563.320 kb on - strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.352 kb on - strand, within CCNA_00544

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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560,779 - -1.0
560,784 + -0.1
560,784 + -1.4
560,784 + -3.3
560,784 + +0.0
560,806 + -2.6
560,856 + +0.7
560,864 - -0.8
560,867 + -0.1
560,883 + +0.2
560,889 - -1.2
560,889 - +0.5
560,910 + +0.3
560,910 + -0.3
560,910 + -0.6
560,910 + +1.3
560,910 + +0.0
560,910 + +0.3
560,910 + -0.8
560,918 - CCNA_03923 0.17 -0.3
560,918 - CCNA_03923 0.17 +0.3
560,918 - CCNA_03923 0.17 +0.7
560,918 - CCNA_03923 0.17 -0.2
560,918 - CCNA_03923 0.17 -0.3
560,918 - CCNA_03923 0.17 +0.4
560,918 - CCNA_03923 0.17 -0.9
560,925 + CCNA_03923 0.27 -0.2
560,925 + CCNA_03923 0.27 -1.1
560,925 + CCNA_03923 0.27 -0.1
560,933 - CCNA_03923 0.39 +1.0
560,967 + -0.3
560,968 + -0.3
560,970 - +0.3
560,970 - +0.9
560,976 - -0.0
561,102 + CCNA_00541 0.21 -0.0
561,126 + CCNA_00541 0.29 -0.2
561,206 + CCNA_00541 0.55 -0.1
561,214 - CCNA_00541 0.58 -0.2
561,261 - CCNA_00541 0.73 -1.4
561,296 + CCNA_00541 0.84 -0.2
561,296 + CCNA_00541 0.84 +0.3
561,321 + -0.3
561,339 + +0.2
561,347 - -0.0
561,365 + +0.0
561,395 + CCNA_00542 0.17 +0.5
561,431 + CCNA_00542 0.28 -0.4
561,431 + CCNA_00542 0.28 +1.1
561,439 - CCNA_00542 0.30 +0.6
561,464 + CCNA_00542 0.38 -0.5
561,464 + CCNA_00542 0.38 -0.1
561,469 + CCNA_00542 0.40 -1.0
561,472 - CCNA_00542 0.40 -0.3
561,488 - CCNA_00542 0.45 -0.3
561,488 - CCNA_00542 0.45 -0.8
561,510 - CCNA_00542 0.52 -0.2
561,518 + CCNA_00542 0.55 -1.3
561,545 - CCNA_00542 0.63 +0.4
561,571 - CCNA_00542 0.71 +1.0
561,571 - CCNA_00542 0.71 +0.3
561,587 - CCNA_00542 0.76 +0.9
561,592 - CCNA_00542 0.77 -0.1
561,627 + CCNA_00542 0.88 -0.0
561,627 + CCNA_00542 0.88 +0.5
561,627 + CCNA_00542 0.88 -0.2
561,660 + -1.2
561,660 + -0.0
561,673 - +0.1
561,673 - +0.5
561,680 - -0.3
561,683 + -0.5
561,696 - +0.6
561,701 + -1.2
561,707 + +0.0
561,711 + -0.4
561,711 + -0.5
561,711 + +0.0
561,719 - -0.5
561,719 - +0.8
561,720 + +0.3
561,753 + +0.3
561,817 + CCNA_00543 0.16 -1.7
561,863 + CCNA_00543 0.23 +0.6
561,911 - CCNA_00543 0.30 -1.9
561,916 - CCNA_00543 0.31 +1.0
561,916 - CCNA_00543 0.31 -0.9
561,925 - CCNA_00543 0.33 +0.2
561,930 - CCNA_00543 0.33 +0.4
561,966 + CCNA_00543 0.39 +2.2
561,971 + CCNA_00543 0.40 -2.0
561,974 - CCNA_00543 0.40 +1.1
561,974 - CCNA_00543 0.40 +0.2
562,051 - CCNA_00543 0.52 +0.7
562,111 - CCNA_00543 0.61 -0.4
562,145 + CCNA_00543 0.66 -0.4
562,145 + CCNA_00543 0.66 -0.7
562,229 - CCNA_00543 0.79 +0.0
562,239 - CCNA_00543 0.81 +0.1
562,259 - CCNA_00543 0.84 +0.0
562,378 - +1.3
562,435 + -0.3
562,435 + +0.5
562,444 + +0.3
562,452 - -0.0
562,452 - -1.1
562,452 - -1.1
562,452 - -1.0
562,455 + +0.2
562,491 + -0.6
562,553 + -0.2
562,553 + -0.1
562,555 - +0.5
562,561 - -1.6
562,615 + +0.9
562,625 + +0.3
562,629 - +0.3
562,663 - +0.1
562,665 + +0.7
562,665 + -0.7
562,668 - -0.3
562,668 - -0.8
562,672 + -0.2
562,673 - +0.3
562,673 - +0.3
562,745 - CCNA_00544 0.14 -0.6
562,752 + CCNA_00544 0.15 +0.1
562,770 - CCNA_00544 0.16 +0.1
562,814 - CCNA_00544 0.20 -0.6
562,818 + CCNA_00544 0.20 +0.4
562,849 + CCNA_00544 0.23 -0.3
562,849 + CCNA_00544 0.23 +0.2
562,849 + CCNA_00544 0.23 -0.6
562,852 - CCNA_00544 0.23 -0.6
562,852 - CCNA_00544 0.23 +0.0
562,857 - CCNA_00544 0.24 -0.1
562,863 + CCNA_00544 0.24 +0.7
562,881 - CCNA_00544 0.26 -0.1
562,918 + CCNA_00544 0.29 +0.7
562,926 - CCNA_00544 0.30 -0.4
562,934 + CCNA_00544 0.30 +0.7
562,949 + CCNA_00544 0.31 +0.4
562,949 + CCNA_00544 0.31 -0.6
562,967 + CCNA_00544 0.33 -0.4
562,971 + CCNA_00544 0.33 +0.2
563,004 + CCNA_00544 0.36 +0.0
563,028 + CCNA_00544 0.38 -0.2
563,036 - CCNA_00544 0.39 -0.1
563,047 + CCNA_00544 0.40 +0.8
563,055 - CCNA_00544 0.40 +1.6
563,056 + CCNA_00544 0.41 -0.1
563,064 - CCNA_00544 0.41 -0.5
563,064 - CCNA_00544 0.41 +0.8
563,064 - CCNA_00544 0.41 -1.3
563,095 + CCNA_00544 0.44 +1.0
563,103 - CCNA_00544 0.45 +0.1
563,103 - CCNA_00544 0.45 -1.2
563,103 - CCNA_00544 0.45 -1.9
563,103 - CCNA_00544 0.45 -1.6
563,119 + CCNA_00544 0.46 +0.0
563,148 - CCNA_00544 0.48 -0.5
563,183 + CCNA_00544 0.51 +0.6
563,201 - CCNA_00544 0.53 +0.0
563,207 - CCNA_00544 0.53 +0.8
563,220 + CCNA_00544 0.55 +0.3
563,229 - CCNA_00544 0.55 -0.1
563,272 - CCNA_00544 0.59 +0.1
563,280 + CCNA_00544 0.60 +0.8
563,298 - CCNA_00544 0.61 -0.2
563,320 - CCNA_00544 0.63 +0.0
563,344 + CCNA_00544 0.65 +0.0
563,352 - CCNA_00544 0.66 -1.4

Or see this region's nucleotide sequence