Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00535

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00534 and CCNA_00535 are separated by 42 nucleotidesCCNA_00535 and CCNA_00536 are separated by 293 nucleotides CCNA_00534: CCNA_00534 - hypothetical protein, at 546,314 to 547,336 _00534 CCNA_00535: CCNA_00535 - hypothetical protein, at 547,379 to 547,537 _00535 CCNA_00536: CCNA_00536 - DNA-directed RNA polymerase beta chain, at 547,831 to 551,901 _00536 Position (kb) 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 546.395 kb on + strandat 546.395 kb on + strandat 546.416 kb on + strandat 546.431 kb on - strand, within CCNA_00534at 546.433 kb on + strand, within CCNA_00534at 546.460 kb on + strand, within CCNA_00534at 546.485 kb on + strand, within CCNA_00534at 546.493 kb on - strand, within CCNA_00534at 546.494 kb on + strand, within CCNA_00534at 546.507 kb on - strand, within CCNA_00534at 546.553 kb on + strand, within CCNA_00534at 546.555 kb on + strand, within CCNA_00534at 546.563 kb on - strand, within CCNA_00534at 546.636 kb on + strand, within CCNA_00534at 546.647 kb on + strand, within CCNA_00534at 546.647 kb on + strand, within CCNA_00534at 546.655 kb on - strand, within CCNA_00534at 546.716 kb on - strand, within CCNA_00534at 546.733 kb on + strand, within CCNA_00534at 546.772 kb on + strand, within CCNA_00534at 546.777 kb on - strand, within CCNA_00534at 546.788 kb on + strand, within CCNA_00534at 546.796 kb on - strand, within CCNA_00534at 546.796 kb on - strand, within CCNA_00534at 546.802 kb on - strand, within CCNA_00534at 546.833 kb on + strand, within CCNA_00534at 546.882 kb on + strand, within CCNA_00534at 546.891 kb on + strand, within CCNA_00534at 546.899 kb on - strand, within CCNA_00534at 546.899 kb on - strand, within CCNA_00534at 546.909 kb on - strand, within CCNA_00534at 546.914 kb on - strand, within CCNA_00534at 546.915 kb on + strand, within CCNA_00534at 546.928 kb on - strand, within CCNA_00534at 546.931 kb on + strand, within CCNA_00534at 546.934 kb on - strand, within CCNA_00534at 546.939 kb on - strand, within CCNA_00534at 547.040 kb on + strand, within CCNA_00534at 547.040 kb on + strand, within CCNA_00534at 547.058 kb on + strand, within CCNA_00534at 547.058 kb on + strand, within CCNA_00534at 547.068 kb on - strand, within CCNA_00534at 547.069 kb on + strand, within CCNA_00534at 547.082 kb on + strand, within CCNA_00534at 547.090 kb on - strand, within CCNA_00534at 547.090 kb on - strand, within CCNA_00534at 547.090 kb on - strand, within CCNA_00534at 547.101 kb on - strand, within CCNA_00534at 547.106 kb on + strand, within CCNA_00534at 547.120 kb on + strand, within CCNA_00534at 547.120 kb on + strand, within CCNA_00534at 547.128 kb on - strand, within CCNA_00534at 547.181 kb on + strand, within CCNA_00534at 547.189 kb on - strand, within CCNA_00534at 547.189 kb on - strand, within CCNA_00534at 547.189 kb on - strand, within CCNA_00534at 547.239 kb on - strandat 547.240 kb on + strandat 547.253 kb on + strandat 547.253 kb on + strandat 547.255 kb on + strandat 547.261 kb on - strandat 547.268 kb on + strandat 547.268 kb on + strandat 547.268 kb on + strandat 547.276 kb on - strandat 547.294 kb on + strandat 547.334 kb on - strandat 547.353 kb on - strandat 547.367 kb on + strandat 547.380 kb on + strandat 547.411 kb on + strand, within CCNA_00535at 547.411 kb on + strand, within CCNA_00535at 547.426 kb on - strand, within CCNA_00535at 547.435 kb on - strand, within CCNA_00535at 547.453 kb on - strand, within CCNA_00535at 547.500 kb on + strand, within CCNA_00535at 547.518 kb on - strand, within CCNA_00535at 547.520 kb on + strand, within CCNA_00535at 547.545 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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546,395 + +0.1
546,395 + +0.2
546,416 + -0.4
546,431 - CCNA_00534 0.11 +1.9
546,433 + CCNA_00534 0.12 +0.0
546,460 + CCNA_00534 0.14 +0.0
546,485 + CCNA_00534 0.17 +0.6
546,493 - CCNA_00534 0.17 -0.4
546,494 + CCNA_00534 0.18 +0.4
546,507 - CCNA_00534 0.19 +0.6
546,553 + CCNA_00534 0.23 +0.5
546,555 + CCNA_00534 0.24 +0.3
546,563 - CCNA_00534 0.24 -0.3
546,636 + CCNA_00534 0.31 +0.1
546,647 + CCNA_00534 0.33 +0.1
546,647 + CCNA_00534 0.33 -0.0
546,655 - CCNA_00534 0.33 -1.3
546,716 - CCNA_00534 0.39 +0.8
546,733 + CCNA_00534 0.41 -0.2
546,772 + CCNA_00534 0.45 -0.4
546,777 - CCNA_00534 0.45 -0.2
546,788 + CCNA_00534 0.46 +0.3
546,796 - CCNA_00534 0.47 -0.5
546,796 - CCNA_00534 0.47 -0.9
546,802 - CCNA_00534 0.48 -0.9
546,833 + CCNA_00534 0.51 +0.2
546,882 + CCNA_00534 0.56 +0.4
546,891 + CCNA_00534 0.56 +0.6
546,899 - CCNA_00534 0.57 -0.7
546,899 - CCNA_00534 0.57 -0.1
546,909 - CCNA_00534 0.58 -0.5
546,914 - CCNA_00534 0.59 +0.8
546,915 + CCNA_00534 0.59 +0.1
546,928 - CCNA_00534 0.60 -0.8
546,931 + CCNA_00534 0.60 +0.6
546,934 - CCNA_00534 0.61 +0.6
546,939 - CCNA_00534 0.61 -0.5
547,040 + CCNA_00534 0.71 +0.3
547,040 + CCNA_00534 0.71 -0.3
547,058 + CCNA_00534 0.73 +0.1
547,058 + CCNA_00534 0.73 -0.3
547,068 - CCNA_00534 0.74 -0.7
547,069 + CCNA_00534 0.74 +0.0
547,082 + CCNA_00534 0.75 +0.4
547,090 - CCNA_00534 0.76 +0.4
547,090 - CCNA_00534 0.76 +0.5
547,090 - CCNA_00534 0.76 -1.0
547,101 - CCNA_00534 0.77 -0.4
547,106 + CCNA_00534 0.77 +0.3
547,120 + CCNA_00534 0.79 -0.2
547,120 + CCNA_00534 0.79 -0.8
547,128 - CCNA_00534 0.80 -0.3
547,181 + CCNA_00534 0.85 +0.8
547,189 - CCNA_00534 0.86 -0.0
547,189 - CCNA_00534 0.86 +0.6
547,189 - CCNA_00534 0.86 -0.5
547,239 - +0.5
547,240 + +0.4
547,253 + -2.3
547,253 + +0.5
547,255 + -0.2
547,261 - -2.8
547,268 + +0.1
547,268 + -0.1
547,268 + +0.5
547,276 - -1.8
547,294 + -1.1
547,334 - -0.6
547,353 - -0.9
547,367 + +0.0
547,380 + +0.2
547,411 + CCNA_00535 0.20 -0.7
547,411 + CCNA_00535 0.20 -0.2
547,426 - CCNA_00535 0.30 -1.0
547,435 - CCNA_00535 0.35 -0.6
547,453 - CCNA_00535 0.47 -0.1
547,500 + CCNA_00535 0.76 -0.9
547,518 - CCNA_00535 0.87 -1.7
547,520 + CCNA_00535 0.89 -0.7
547,545 + +0.1

Or see this region's nucleotide sequence