Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00480 and CCNA_00481 are separated by 329 nucleotides CCNA_00481 and CCNA_00482 overlap by 14 nucleotides CCNA_00482 and CCNA_R0007 are separated by 229 nucleotides CCNA_R0007 and CCNA_00483 are separated by 204 nucleotides
CCNA_00480: CCNA_00480 - bacteriophage P4 integrase, at 495,724 to 497,022
_00480
CCNA_00481: CCNA_00481 - HipB transcriptional regulator, at 497,352 to 497,597
_00481
CCNA_00482: CCNA_00482 - toxin protein module HipA, at 497,584 to 498,855
_00482
CCNA_R0007: CCNA_R0007 - tRNA-Ser, at 499,085 to 499,174
_R0007
CCNA_00483: CCNA_00483 - Zn-dependent hydrolase, glyoxalase II family, at 499,379 to 500,224
_00483
Position (kb) 497
498
499 Strain fitness (log2 ratio) -2
-1
0
1
2 at 496.585 kb on + strand, within CCNA_00480 at 496.585 kb on + strand, within CCNA_00480 at 496.585 kb on + strand, within CCNA_00480 at 496.588 kb on - strand, within CCNA_00480 at 496.593 kb on - strand, within CCNA_00480 at 496.617 kb on - strand, within CCNA_00480 at 496.623 kb on + strand, within CCNA_00480 at 496.651 kb on - strand, within CCNA_00480 at 496.725 kb on - strand, within CCNA_00480 at 496.726 kb on - strand, within CCNA_00480 at 496.728 kb on + strand, within CCNA_00480 at 496.796 kb on - strand, within CCNA_00480 at 496.808 kb on + strand, within CCNA_00480 at 496.821 kb on - strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.867 kb on + strand, within CCNA_00480 at 496.885 kb on - strand, within CCNA_00480 at 496.889 kb on + strand, within CCNA_00480 at 496.935 kb on + strand at 496.941 kb on + strand at 496.961 kb on + strand at 496.961 kb on + strand at 496.961 kb on + strand at 496.969 kb on - strand at 496.981 kb on + strand at 496.986 kb on + strand at 497.033 kb on + strand at 497.033 kb on + strand at 497.033 kb on + strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.060 kb on - strand at 497.108 kb on - strand at 497.140 kb on - strand at 497.145 kb on + strand at 497.153 kb on - strand at 497.153 kb on - strand at 497.177 kb on + strand at 497.177 kb on + strand at 497.177 kb on + strand at 497.177 kb on + strand at 497.177 kb on + strand at 497.185 kb on - strand at 497.190 kb on - strand at 497.201 kb on + strand at 497.219 kb on + strand at 497.227 kb on - strand at 497.255 kb on - strand at 497.370 kb on + strand at 497.370 kb on + strand at 497.370 kb on + strand at 497.370 kb on + strand at 497.370 kb on + strand at 497.378 kb on - strand, within CCNA_00481 at 497.378 kb on - strand, within CCNA_00481 at 497.378 kb on - strand, within CCNA_00481 at 497.378 kb on - strand, within CCNA_00481 at 497.378 kb on - strand, within CCNA_00481 at 497.566 kb on + strand, within CCNA_00481 at 497.569 kb on - strand, within CCNA_00481 at 497.582 kb on - strand at 497.592 kb on + strand at 497.595 kb on - strand at 497.608 kb on + strand at 497.612 kb on + strand at 497.616 kb on - strand at 497.703 kb on - strand at 497.721 kb on + strand, within CCNA_00482 at 497.734 kb on + strand, within CCNA_00482 at 497.822 kb on + strand, within CCNA_00482 at 497.831 kb on + strand, within CCNA_00482 at 497.854 kb on - strand, within CCNA_00482 at 497.854 kb on - strand, within CCNA_00482 at 497.856 kb on + strand, within CCNA_00482 at 497.890 kb on + strand, within CCNA_00482 at 497.900 kb on + strand, within CCNA_00482 at 497.907 kb on + strand, within CCNA_00482 at 497.932 kb on + strand, within CCNA_00482 at 497.950 kb on - strand, within CCNA_00482 at 498.021 kb on - strand, within CCNA_00482 at 498.036 kb on - strand, within CCNA_00482 at 498.036 kb on - strand, within CCNA_00482 at 498.083 kb on + strand, within CCNA_00482 at 498.083 kb on + strand, within CCNA_00482 at 498.116 kb on + strand, within CCNA_00482 at 498.116 kb on - strand, within CCNA_00482 at 498.123 kb on + strand, within CCNA_00482 at 498.131 kb on - strand, within CCNA_00482 at 498.131 kb on - strand, within CCNA_00482 at 498.194 kb on + strand, within CCNA_00482 at 498.202 kb on - strand, within CCNA_00482 at 498.215 kb on + strand, within CCNA_00482 at 498.215 kb on + strand, within CCNA_00482 at 498.215 kb on + strand, within CCNA_00482 at 498.215 kb on + strand, within CCNA_00482 at 498.215 kb on + strand, within CCNA_00482 at 498.215 kb on + strand, within CCNA_00482 at 498.223 kb on - strand, within CCNA_00482 at 498.223 kb on - strand, within CCNA_00482 at 498.223 kb on - strand, within CCNA_00482 at 498.223 kb on - strand, within CCNA_00482 at 498.223 kb on - strand, within CCNA_00482 at 498.223 kb on - strand, within CCNA_00482 at 498.223 kb on - strand, within CCNA_00482 at 498.230 kb on + strand, within CCNA_00482 at 498.238 kb on - strand, within CCNA_00482 at 498.247 kb on + strand, within CCNA_00482 at 498.253 kb on - strand, within CCNA_00482 at 498.253 kb on - strand, within CCNA_00482 at 498.255 kb on + strand, within CCNA_00482 at 498.281 kb on + strand, within CCNA_00482 at 498.290 kb on + strand, within CCNA_00482 at 498.290 kb on + strand, within CCNA_00482 at 498.361 kb on + strand, within CCNA_00482 at 498.389 kb on + strand, within CCNA_00482 at 498.389 kb on + strand, within CCNA_00482 at 498.397 kb on - strand, within CCNA_00482 at 498.397 kb on - strand, within CCNA_00482 at 498.418 kb on - strand, within CCNA_00482 at 498.418 kb on - strand, within CCNA_00482 at 498.439 kb on + strand, within CCNA_00482 at 498.480 kb on + strand, within CCNA_00482 at 498.550 kb on + strand, within CCNA_00482 at 498.555 kb on + strand, within CCNA_00482 at 498.558 kb on + strand, within CCNA_00482 at 498.558 kb on + strand, within CCNA_00482 at 498.558 kb on - strand, within CCNA_00482 at 498.558 kb on - strand, within CCNA_00482 at 498.572 kb on + strand, within CCNA_00482 at 498.584 kb on + strand, within CCNA_00482 at 498.587 kb on - strand, within CCNA_00482 at 498.638 kb on - strand, within CCNA_00482 at 498.638 kb on - strand, within CCNA_00482 at 498.638 kb on - strand, within CCNA_00482 at 498.684 kb on - strand, within CCNA_00482 at 498.730 kb on - strand at 498.732 kb on + strand at 498.732 kb on + strand at 498.732 kb on + strand at 498.816 kb on + strand at 498.816 kb on + strand at 498.816 kb on + strand at 498.849 kb on + strand at 498.864 kb on + strand at 498.864 kb on + strand at 498.864 kb on + strand at 498.869 kb on + strand at 498.869 kb on + strand at 498.869 kb on + strand at 498.872 kb on - strand at 498.872 kb on - strand at 498.874 kb on + strand at 498.874 kb on + strand at 498.877 kb on - strand at 498.879 kb on + strand at 498.879 kb on + strand at 498.888 kb on + strand at 498.897 kb on - strand at 498.907 kb on + strand at 498.937 kb on + strand at 498.947 kb on + strand at 498.949 kb on + strand at 498.980 kb on - strand at 499.022 kb on - strand at 499.247 kb on + strand at 499.377 kb on + strand at 499.387 kb on + strand at 499.436 kb on - strand at 499.465 kb on + strand, within CCNA_00483 at 499.470 kb on + strand, within CCNA_00483 at 499.473 kb on - strand, within CCNA_00483 at 499.480 kb on + strand, within CCNA_00483 at 499.488 kb on - strand, within CCNA_00483 at 499.527 kb on - strand, within CCNA_00483 at 499.550 kb on + strand, within CCNA_00483 at 499.558 kb on + strand, within CCNA_00483 at 499.568 kb on - strand, within CCNA_00483 at 499.570 kb on - strand, within CCNA_00483 at 499.639 kb on - strand, within CCNA_00483 at 499.667 kb on + strand, within CCNA_00483 at 499.668 kb on + strand, within CCNA_00483 at 499.676 kb on - strand, within CCNA_00483 at 499.676 kb on - strand, within CCNA_00483 at 499.685 kb on - strand, within CCNA_00483 at 499.725 kb on + strand, within CCNA_00483 at 499.743 kb on + strand, within CCNA_00483 at 499.754 kb on + strand, within CCNA_00483 at 499.816 kb on + strand, within CCNA_00483
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 496,585 + CCNA_00480 0.66 -1.2 496,585 + CCNA_00480 0.66 -0.7 496,585 + CCNA_00480 0.66 +0.4 496,588 - CCNA_00480 0.67 +0.7 496,593 - CCNA_00480 0.67 -0.1 496,617 - CCNA_00480 0.69 -0.0 496,623 + CCNA_00480 0.69 +0.7 496,651 - CCNA_00480 0.71 -0.5 496,725 - CCNA_00480 0.77 -0.3 496,726 - CCNA_00480 0.77 -1.5 496,728 + CCNA_00480 0.77 -2.1 496,796 - CCNA_00480 0.83 +1.2 496,808 + CCNA_00480 0.83 +0.3 496,821 - CCNA_00480 0.84 -0.1 496,842 + CCNA_00480 0.86 +1.5 496,842 + CCNA_00480 0.86 -0.0 496,842 + CCNA_00480 0.86 -0.9 496,842 + CCNA_00480 0.86 -0.5 496,842 + CCNA_00480 0.86 -0.8 496,850 - CCNA_00480 0.87 -0.2 496,850 - CCNA_00480 0.87 -0.6 496,850 - CCNA_00480 0.87 -1.4 496,850 - CCNA_00480 0.87 -0.1 496,867 + CCNA_00480 0.88 +0.2 496,885 - CCNA_00480 0.89 -0.8 496,889 + CCNA_00480 0.90 +0.4 496,935 + -0.6 496,941 + -2.0 496,961 + -0.0 496,961 + -0.1 496,961 + +1.5 496,969 - +0.8 496,981 + +0.1 496,986 + +0.2 497,033 + -0.2 497,033 + -0.0 497,033 + +0.2 497,041 - +0.4 497,041 - -0.1 497,041 - -0.4 497,041 - +2.1 497,041 - +0.2 497,041 - -0.1 497,060 - +0.7 497,108 - +0.9 497,140 - -0.9 497,145 + +0.8 497,153 - -0.8 497,153 - -0.6 497,177 + +0.7 497,177 + +2.3 497,177 + +0.1 497,177 + +0.2 497,177 + +0.3 497,185 - +0.7 497,190 - +0.5 497,201 + +0.8 497,219 + +0.1 497,227 - +0.6 497,255 - -0.7 497,370 + -1.3 497,370 + +1.3 497,370 + -0.8 497,370 + -2.0 497,370 + +0.4 497,378 - CCNA_00481 0.11 -0.0 497,378 - CCNA_00481 0.11 -2.3 497,378 - CCNA_00481 0.11 -0.5 497,378 - CCNA_00481 0.11 +0.4 497,378 - CCNA_00481 0.11 +1.0 497,566 + CCNA_00481 0.87 +0.5 497,569 - CCNA_00481 0.88 +0.4 497,582 - +0.2 497,592 + -0.6 497,595 - +0.2 497,608 + +0.1 497,612 + +0.5 497,616 - -0.4 497,703 - -0.0 497,721 + CCNA_00482 0.11 +0.2 497,734 + CCNA_00482 0.12 -0.1 497,822 + CCNA_00482 0.19 -0.1 497,831 + CCNA_00482 0.19 +0.7 497,854 - CCNA_00482 0.21 -0.8 497,854 - CCNA_00482 0.21 -0.1 497,856 + CCNA_00482 0.21 -0.3 497,890 + CCNA_00482 0.24 +0.4 497,900 + CCNA_00482 0.25 -0.2 497,907 + CCNA_00482 0.25 +0.5 497,932 + CCNA_00482 0.27 +0.5 497,950 - CCNA_00482 0.29 -0.4 498,021 - CCNA_00482 0.34 +0.2 498,036 - CCNA_00482 0.36 -0.8 498,036 - CCNA_00482 0.36 -0.3 498,083 + CCNA_00482 0.39 +0.0 498,083 + CCNA_00482 0.39 -0.4 498,116 + CCNA_00482 0.42 +0.6 498,116 - CCNA_00482 0.42 -0.1 498,123 + CCNA_00482 0.42 +0.1 498,131 - CCNA_00482 0.43 -0.2 498,131 - CCNA_00482 0.43 -0.2 498,194 + CCNA_00482 0.48 -0.6 498,202 - CCNA_00482 0.49 +0.1 498,215 + CCNA_00482 0.50 -0.1 498,215 + CCNA_00482 0.50 -0.1 498,215 + CCNA_00482 0.50 -2.5 498,215 + CCNA_00482 0.50 +0.7 498,215 + CCNA_00482 0.50 +1.2 498,215 + CCNA_00482 0.50 -0.9 498,223 - CCNA_00482 0.50 -0.4 498,223 - CCNA_00482 0.50 -0.0 498,223 - CCNA_00482 0.50 +0.0 498,223 - CCNA_00482 0.50 -0.2 498,223 - CCNA_00482 0.50 +0.5 498,223 - CCNA_00482 0.50 -0.9 498,223 - CCNA_00482 0.50 -0.8 498,230 + CCNA_00482 0.51 +0.2 498,238 - CCNA_00482 0.51 -0.8 498,247 + CCNA_00482 0.52 +0.9 498,253 - CCNA_00482 0.53 -0.5 498,253 - CCNA_00482 0.53 +0.1 498,255 + CCNA_00482 0.53 -0.2 498,281 + CCNA_00482 0.55 +0.0 498,290 + CCNA_00482 0.56 -0.7 498,290 + CCNA_00482 0.56 +0.2 498,361 + CCNA_00482 0.61 -0.1 498,389 + CCNA_00482 0.63 -0.0 498,389 + CCNA_00482 0.63 +0.5 498,397 - CCNA_00482 0.64 +0.1 498,397 - CCNA_00482 0.64 -0.7 498,418 - CCNA_00482 0.66 -0.1 498,418 - CCNA_00482 0.66 -1.2 498,439 + CCNA_00482 0.67 +2.3 498,480 + CCNA_00482 0.70 -0.6 498,550 + CCNA_00482 0.76 +0.4 498,555 + CCNA_00482 0.76 +0.5 498,558 + CCNA_00482 0.77 +0.3 498,558 + CCNA_00482 0.77 -0.1 498,558 - CCNA_00482 0.77 -0.5 498,558 - CCNA_00482 0.77 -0.7 498,572 + CCNA_00482 0.78 +0.5 498,584 + CCNA_00482 0.79 +0.4 498,587 - CCNA_00482 0.79 -0.5 498,638 - CCNA_00482 0.83 -1.1 498,638 - CCNA_00482 0.83 -0.5 498,638 - CCNA_00482 0.83 +0.8 498,684 - CCNA_00482 0.86 -0.6 498,730 - -0.1 498,732 + -0.2 498,732 + -0.1 498,732 + +1.3 498,816 + -0.4 498,816 + -1.0 498,816 + -0.1 498,849 + -0.1 498,864 + +0.7 498,864 + +0.1 498,864 + -0.4 498,869 + -0.9 498,869 + +0.5 498,869 + -0.3 498,872 - +0.3 498,872 - -1.0 498,874 + +0.1 498,874 + -0.9 498,877 - +0.9 498,879 + -0.1 498,879 + +0.4 498,888 + -0.9 498,897 - -0.5 498,907 + -1.2 498,937 + -1.8 498,947 + +0.7 498,949 + -0.6 498,980 - +0.6 499,022 - +0.2 499,247 + -1.2 499,377 + +0.4 499,387 + -0.1 499,436 - +0.6 499,465 + CCNA_00483 0.10 -0.5 499,470 + CCNA_00483 0.11 +0.2 499,473 - CCNA_00483 0.11 +0.9 499,480 + CCNA_00483 0.12 -0.6 499,488 - CCNA_00483 0.13 +0.3 499,527 - CCNA_00483 0.17 +0.3 499,550 + CCNA_00483 0.20 -0.2 499,558 + CCNA_00483 0.21 +0.5 499,568 - CCNA_00483 0.22 +0.5 499,570 - CCNA_00483 0.23 +0.5 499,639 - CCNA_00483 0.31 +0.1 499,667 + CCNA_00483 0.34 +0.9 499,668 + CCNA_00483 0.34 -1.0 499,676 - CCNA_00483 0.35 -1.5 499,676 - CCNA_00483 0.35 +0.2 499,685 - CCNA_00483 0.36 -0.0 499,725 + CCNA_00483 0.41 -0.6 499,743 + CCNA_00483 0.43 +0.5 499,754 + CCNA_00483 0.44 -1.6 499,816 + CCNA_00483 0.52 +0.0
Or see this region's nucleotide sequence