Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00459

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00458 and CCNA_00459 are separated by 126 nucleotidesCCNA_00459 and CCNA_00460 are separated by 461 nucleotides CCNA_00458: CCNA_00458 - PTS system, N-acetylglucosamine-specific IIBC component, at 469,661 to 471,415 _00458 CCNA_00459: CCNA_00459 - Na+/H+ antiporter nhaA, at 471,542 to 472,783 _00459 CCNA_00460: CCNA_00460 - hypothetical protein, at 473,245 to 473,400 _00460 Position (kb) 471 472 473Strain fitness (log2 ratio) -2 -1 0 1at 470.570 kb on + strand, within CCNA_00458at 471.240 kb on + strandat 471.304 kb on + strandat 471.310 kb on - strandat 471.312 kb on + strandat 471.327 kb on + strandat 471.357 kb on + strandat 471.390 kb on + strandat 471.417 kb on + strandat 471.510 kb on - strandat 471.533 kb on - strandat 471.540 kb on - strandat 471.542 kb on + strandat 471.550 kb on - strandat 471.638 kb on + strandat 471.710 kb on + strand, within CCNA_00459at 471.796 kb on + strand, within CCNA_00459at 471.796 kb on + strand, within CCNA_00459at 471.885 kb on - strand, within CCNA_00459at 471.920 kb on - strand, within CCNA_00459at 471.940 kb on - strand, within CCNA_00459at 471.967 kb on + strand, within CCNA_00459at 472.054 kb on + strand, within CCNA_00459at 472.054 kb on + strand, within CCNA_00459at 472.062 kb on + strand, within CCNA_00459at 472.062 kb on - strand, within CCNA_00459at 472.067 kb on + strand, within CCNA_00459at 472.082 kb on + strand, within CCNA_00459at 472.107 kb on + strand, within CCNA_00459at 472.237 kb on - strand, within CCNA_00459at 472.242 kb on - strand, within CCNA_00459at 472.430 kb on - strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.613 kb on - strand, within CCNA_00459at 472.656 kb on + strand, within CCNA_00459at 472.669 kb on - strandat 472.669 kb on - strandat 472.684 kb on - strandat 472.684 kb on - strandat 472.687 kb on - strandat 472.687 kb on - strandat 472.774 kb on + strandat 472.875 kb on + strandat 472.894 kb on + strandat 472.914 kb on - strandat 472.967 kb on + strandat 472.975 kb on - strandat 472.977 kb on + strandat 472.977 kb on + strandat 472.990 kb on - strandat 473.000 kb on - strandat 473.000 kb on - strandat 473.161 kb on + strandat 473.205 kb on + strandat 473.205 kb on + strandat 473.205 kb on + strandat 473.205 kb on + strandat 473.226 kb on + strandat 473.237 kb on - strandat 473.252 kb on + strandat 473.259 kb on + strandat 473.259 kb on + strandat 473.260 kb on - strandat 473.261 kb on - strand, within CCNA_00460at 473.270 kb on + strand, within CCNA_00460at 473.275 kb on + strand, within CCNA_00460at 473.275 kb on + strand, within CCNA_00460at 473.278 kb on - strand, within CCNA_00460at 473.283 kb on - strand, within CCNA_00460at 473.309 kb on + strand, within CCNA_00460at 473.314 kb on + strand, within CCNA_00460at 473.317 kb on - strand, within CCNA_00460at 473.319 kb on + strand, within CCNA_00460at 473.327 kb on - strand, within CCNA_00460at 473.327 kb on - strand, within CCNA_00460at 473.342 kb on - strand, within CCNA_00460at 473.345 kb on + strand, within CCNA_00460at 473.345 kb on + strand, within CCNA_00460at 473.350 kb on + strand, within CCNA_00460at 473.377 kb on - strand, within CCNA_00460at 473.398 kb on - strandat 473.509 kb on - strandat 473.511 kb on + strandat 473.519 kb on - strandat 473.545 kb on + strandat 473.553 kb on - strandat 473.588 kb on + strandat 473.588 kb on + strandat 473.596 kb on - strandat 473.656 kb on + strandat 473.706 kb on - strandat 473.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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470,570 + CCNA_00458 0.52 -0.1
471,240 + -0.2
471,304 + -0.6
471,310 - -0.5
471,312 + +1.2
471,327 + -0.6
471,357 + -0.7
471,390 + -0.1
471,417 + +0.1
471,510 - -0.3
471,533 - -0.1
471,540 - -0.7
471,542 + +1.7
471,550 - +0.5
471,638 + +0.2
471,710 + CCNA_00459 0.14 -0.6
471,796 + CCNA_00459 0.20 +0.2
471,796 + CCNA_00459 0.20 -0.2
471,885 - CCNA_00459 0.28 -1.2
471,920 - CCNA_00459 0.30 -0.6
471,940 - CCNA_00459 0.32 +0.5
471,967 + CCNA_00459 0.34 -0.7
472,054 + CCNA_00459 0.41 +0.5
472,054 + CCNA_00459 0.41 -0.0
472,062 + CCNA_00459 0.42 +0.4
472,062 - CCNA_00459 0.42 +0.2
472,067 + CCNA_00459 0.42 -0.6
472,082 + CCNA_00459 0.43 +0.2
472,107 + CCNA_00459 0.45 -0.1
472,237 - CCNA_00459 0.56 -0.1
472,242 - CCNA_00459 0.56 -0.7
472,430 - CCNA_00459 0.71 +0.5
472,531 + CCNA_00459 0.80 -0.6
472,613 - CCNA_00459 0.86 -0.3
472,656 + CCNA_00459 0.90 +0.2
472,669 - +0.3
472,669 - -0.1
472,684 - -0.5
472,684 - -0.1
472,687 - -0.4
472,687 - -2.1
472,774 + +0.5
472,875 + +0.6
472,894 + +0.1
472,914 - +1.0
472,967 + +0.3
472,975 - -0.6
472,977 + +0.8
472,977 + +0.4
472,990 - -0.5
473,000 - -0.8
473,000 - -0.2
473,161 + +0.4
473,205 + +0.3
473,205 + -0.3
473,205 + +0.2
473,205 + -1.3
473,226 + +0.6
473,237 - +0.5
473,252 + +0.3
473,259 + +0.5
473,259 + +1.5
473,260 - +1.2
473,261 - CCNA_00460 0.10 +0.4
473,270 + CCNA_00460 0.16 +0.5
473,275 + CCNA_00460 0.19 +0.3
473,275 + CCNA_00460 0.19 -2.1
473,278 - CCNA_00460 0.21 -0.4
473,283 - CCNA_00460 0.24 -0.7
473,309 + CCNA_00460 0.41 +1.3
473,314 + CCNA_00460 0.44 -0.7
473,317 - CCNA_00460 0.46 -1.3
473,319 + CCNA_00460 0.47 -0.6
473,327 - CCNA_00460 0.53 -0.1
473,327 - CCNA_00460 0.53 -0.1
473,342 - CCNA_00460 0.62 -0.4
473,345 + CCNA_00460 0.64 +1.3
473,345 + CCNA_00460 0.64 -0.1
473,350 + CCNA_00460 0.67 +0.4
473,377 - CCNA_00460 0.85 -1.2
473,398 - -1.3
473,509 - -0.4
473,511 + -0.2
473,519 - -0.1
473,545 + -0.1
473,553 - -0.7
473,588 + -0.3
473,588 + +0.4
473,596 - -0.3
473,656 + +0.3
473,706 - -0.3
473,742 - +0.8

Or see this region's nucleotide sequence