Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00324

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00323 and CCNA_00324 are separated by 203 nucleotidesCCNA_00324 and CCNA_00326 are separated by 243 nucleotides CCNA_00323: CCNA_00323 - low-affinity zinc transport protein, at 336,631 to 337,728 _00323 CCNA_00324: CCNA_00324 - ExbD-family protein, at 337,932 to 338,390 _00324 CCNA_00326: CCNA_00326 - vegetatible incompatibility protein HET-E-1, at 338,634 to 339,665 _00326 Position (kb) 337 338 339Strain fitness (log2 ratio) -2 -1 0 1at 336.945 kb on - strand, within CCNA_00323at 336.969 kb on - strand, within CCNA_00323at 337.001 kb on - strand, within CCNA_00323at 337.022 kb on - strand, within CCNA_00323at 337.022 kb on - strand, within CCNA_00323at 337.105 kb on + strand, within CCNA_00323at 337.105 kb on + strand, within CCNA_00323at 337.118 kb on - strand, within CCNA_00323at 337.118 kb on - strand, within CCNA_00323at 337.118 kb on - strand, within CCNA_00323at 337.128 kb on - strand, within CCNA_00323at 337.150 kb on + strand, within CCNA_00323at 337.267 kb on + strand, within CCNA_00323at 337.268 kb on + strand, within CCNA_00323at 337.273 kb on + strand, within CCNA_00323at 337.273 kb on + strand, within CCNA_00323at 337.279 kb on + strand, within CCNA_00323at 337.283 kb on + strand, within CCNA_00323at 337.309 kb on + strand, within CCNA_00323at 337.369 kb on + strand, within CCNA_00323at 337.421 kb on - strand, within CCNA_00323at 337.474 kb on - strand, within CCNA_00323at 337.553 kb on - strand, within CCNA_00323at 337.602 kb on - strand, within CCNA_00323at 337.609 kb on + strand, within CCNA_00323at 337.671 kb on - strandat 337.693 kb on + strandat 337.706 kb on + strandat 337.823 kb on - strandat 337.844 kb on + strandat 337.850 kb on - strandat 337.850 kb on - strandat 337.891 kb on - strandat 337.920 kb on + strandat 337.960 kb on + strandat 337.970 kb on + strandat 337.999 kb on + strand, within CCNA_00324at 338.016 kb on + strand, within CCNA_00324at 338.124 kb on + strand, within CCNA_00324at 338.183 kb on - strand, within CCNA_00324at 338.241 kb on - strand, within CCNA_00324at 338.252 kb on - strand, within CCNA_00324at 338.378 kb on + strandat 338.382 kb on + strandat 338.382 kb on + strandat 338.382 kb on + strandat 338.385 kb on - strandat 338.400 kb on - strandat 338.400 kb on - strandat 338.431 kb on - strandat 338.447 kb on + strandat 338.452 kb on + strandat 338.496 kb on - strandat 338.496 kb on - strandat 338.512 kb on - strandat 338.559 kb on - strandat 338.566 kb on - strandat 338.594 kb on - strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.626 kb on - strandat 338.626 kb on - strandat 338.850 kb on + strand, within CCNA_00326at 338.850 kb on + strand, within CCNA_00326at 338.877 kb on + strand, within CCNA_00326at 338.884 kb on - strand, within CCNA_00326at 338.941 kb on + strand, within CCNA_00326at 338.949 kb on - strand, within CCNA_00326at 338.949 kb on - strand, within CCNA_00326at 338.976 kb on + strand, within CCNA_00326at 339.042 kb on + strand, within CCNA_00326at 339.050 kb on - strand, within CCNA_00326at 339.050 kb on - strand, within CCNA_00326at 339.062 kb on + strand, within CCNA_00326at 339.072 kb on - strand, within CCNA_00326at 339.099 kb on + strand, within CCNA_00326at 339.107 kb on - strand, within CCNA_00326at 339.107 kb on - strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.165 kb on - strand, within CCNA_00326at 339.168 kb on + strand, within CCNA_00326at 339.168 kb on + strand, within CCNA_00326at 339.191 kb on + strand, within CCNA_00326at 339.191 kb on + strand, within CCNA_00326at 339.197 kb on + strand, within CCNA_00326at 339.200 kb on - strand, within CCNA_00326at 339.229 kb on + strand, within CCNA_00326at 339.281 kb on + strand, within CCNA_00326at 339.308 kb on + strand, within CCNA_00326at 339.308 kb on + strand, within CCNA_00326at 339.309 kb on + strand, within CCNA_00326at 339.342 kb on - strand, within CCNA_00326at 339.381 kb on + strand, within CCNA_00326

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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336,945 - CCNA_00323 0.29 +0.1
336,969 - CCNA_00323 0.31 -0.1
337,001 - CCNA_00323 0.34 -0.4
337,022 - CCNA_00323 0.36 -0.2
337,022 - CCNA_00323 0.36 +1.2
337,105 + CCNA_00323 0.43 -0.6
337,105 + CCNA_00323 0.43 -0.4
337,118 - CCNA_00323 0.44 -0.4
337,118 - CCNA_00323 0.44 -0.5
337,118 - CCNA_00323 0.44 -0.7
337,128 - CCNA_00323 0.45 -0.2
337,150 + CCNA_00323 0.47 +0.2
337,267 + CCNA_00323 0.58 -1.0
337,268 + CCNA_00323 0.58 +1.0
337,273 + CCNA_00323 0.58 +0.2
337,273 + CCNA_00323 0.58 +0.2
337,279 + CCNA_00323 0.59 -0.0
337,283 + CCNA_00323 0.59 +1.2
337,309 + CCNA_00323 0.62 +0.2
337,369 + CCNA_00323 0.67 -0.2
337,421 - CCNA_00323 0.72 -0.1
337,474 - CCNA_00323 0.77 +1.5
337,553 - CCNA_00323 0.84 +0.3
337,602 - CCNA_00323 0.88 -0.1
337,609 + CCNA_00323 0.89 +0.2
337,671 - -0.5
337,693 + -0.1
337,706 + +0.3
337,823 - -0.9
337,844 + -0.1
337,850 - +0.7
337,850 - +0.5
337,891 - -0.7
337,920 + -0.5
337,960 + -0.1
337,970 + +0.5
337,999 + CCNA_00324 0.15 -1.5
338,016 + CCNA_00324 0.18 -0.6
338,124 + CCNA_00324 0.42 +0.4
338,183 - CCNA_00324 0.55 -0.3
338,241 - CCNA_00324 0.67 +0.3
338,252 - CCNA_00324 0.70 +0.3
338,378 + +0.1
338,382 + +0.1
338,382 + -0.9
338,382 + -1.4
338,385 - -1.4
338,400 - +0.2
338,400 - +0.4
338,431 - +0.0
338,447 + -0.7
338,452 + +1.7
338,496 - +0.3
338,496 - +0.2
338,512 - +0.1
338,559 - -0.6
338,566 - -0.5
338,594 - +0.8
338,618 + -0.2
338,618 + +0.5
338,626 - -1.9
338,626 - +0.3
338,850 + CCNA_00326 0.21 -1.4
338,850 + CCNA_00326 0.21 -0.2
338,877 + CCNA_00326 0.24 -0.8
338,884 - CCNA_00326 0.24 -0.7
338,941 + CCNA_00326 0.30 +0.5
338,949 - CCNA_00326 0.31 -0.5
338,949 - CCNA_00326 0.31 -0.1
338,976 + CCNA_00326 0.33 -0.6
339,042 + CCNA_00326 0.40 -0.8
339,050 - CCNA_00326 0.40 +0.4
339,050 - CCNA_00326 0.40 +1.2
339,062 + CCNA_00326 0.41 +0.2
339,072 - CCNA_00326 0.42 -0.3
339,099 + CCNA_00326 0.45 -0.0
339,107 - CCNA_00326 0.46 +1.3
339,107 - CCNA_00326 0.46 +0.9
339,138 + CCNA_00326 0.49 +0.2
339,138 + CCNA_00326 0.49 +0.2
339,138 + CCNA_00326 0.49 +0.8
339,146 - CCNA_00326 0.50 -0.4
339,146 - CCNA_00326 0.50 -2.6
339,146 - CCNA_00326 0.50 +0.7
339,165 - CCNA_00326 0.51 +0.0
339,168 + CCNA_00326 0.52 -0.9
339,168 + CCNA_00326 0.52 -0.3
339,191 + CCNA_00326 0.54 +0.2
339,191 + CCNA_00326 0.54 +0.0
339,197 + CCNA_00326 0.55 -1.7
339,200 - CCNA_00326 0.55 +1.2
339,229 + CCNA_00326 0.58 -0.4
339,281 + CCNA_00326 0.63 +0.6
339,308 + CCNA_00326 0.65 -0.9
339,308 + CCNA_00326 0.65 -0.7
339,309 + CCNA_00326 0.65 -0.4
339,342 - CCNA_00326 0.69 -1.5
339,381 + CCNA_00326 0.72 -1.1

Or see this region's nucleotide sequence