Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00316

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00315 and CCNA_00316 are separated by 23 nucleotidesCCNA_00316 and CCNA_00317 overlap by 4 nucleotides CCNA_00315: CCNA_00315 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 329,224 to 330,753 _00315 CCNA_00316: CCNA_00316 - glutamate 5-kinase, at 330,777 to 331,910 _00316 CCNA_00317: CCNA_00317 - GTP-binding protein CgtA, at 331,907 to 332,971 _00317 Position (kb) 330 331 332Strain fitness (log2 ratio) -1 0 1at 329.824 kb on - strand, within CCNA_00315at 329.945 kb on + strand, within CCNA_00315at 330.081 kb on - strand, within CCNA_00315at 330.126 kb on - strand, within CCNA_00315at 330.126 kb on - strand, within CCNA_00315at 330.146 kb on - strand, within CCNA_00315at 330.251 kb on + strand, within CCNA_00315at 330.273 kb on + strand, within CCNA_00315at 330.286 kb on + strand, within CCNA_00315at 330.462 kb on - strand, within CCNA_00315at 330.664 kb on - strandat 330.704 kb on + strandat 330.704 kb on + strandat 330.756 kb on - strandat 330.774 kb on + strandat 330.774 kb on + strandat 330.775 kb on + strandat 330.782 kb on - strandat 330.853 kb on + strandat 330.853 kb on + strandat 330.853 kb on + strandat 330.888 kb on + strandat 330.888 kb on + strandat 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.914 kb on + strand, within CCNA_00316at 330.946 kb on + strand, within CCNA_00316at 330.946 kb on + strand, within CCNA_00316at 330.954 kb on - strand, within CCNA_00316at 330.965 kb on - strand, within CCNA_00316at 331.014 kb on - strand, within CCNA_00316at 331.050 kb on + strand, within CCNA_00316at 331.053 kb on - strand, within CCNA_00316at 331.075 kb on + strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.326 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.349 kb on + strand, within CCNA_00316at 331.354 kb on + strand, within CCNA_00316at 331.357 kb on - strand, within CCNA_00316at 331.362 kb on - strand, within CCNA_00316at 331.362 kb on - strand, within CCNA_00316at 331.365 kb on - strand, within CCNA_00316at 331.394 kb on + strand, within CCNA_00316at 331.394 kb on + strand, within CCNA_00316at 331.410 kb on - strand, within CCNA_00316at 331.452 kb on + strand, within CCNA_00316at 331.466 kb on + strand, within CCNA_00316at 331.580 kb on - strand, within CCNA_00316at 331.580 kb on - strand, within CCNA_00316at 331.589 kb on - strand, within CCNA_00316at 331.594 kb on - strand, within CCNA_00316at 331.600 kb on - strand, within CCNA_00316at 331.615 kb on - strand, within CCNA_00316at 331.615 kb on - strand, within CCNA_00316at 331.621 kb on + strand, within CCNA_00316at 331.640 kb on - strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.687 kb on - strand, within CCNA_00316at 331.708 kb on - strand, within CCNA_00316at 331.724 kb on - strand, within CCNA_00316at 331.786 kb on + strand, within CCNA_00316at 331.794 kb on - strand, within CCNA_00316at 331.796 kb on + strand, within CCNA_00316at 331.804 kb on - strandat 331.804 kb on - strandat 331.831 kb on + strandat 331.831 kb on + strandat 331.844 kb on + strandat 331.846 kb on + strandat 331.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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329,824 - CCNA_00315 0.39 +1.2
329,945 + CCNA_00315 0.47 +0.9
330,081 - CCNA_00315 0.56 +0.6
330,126 - CCNA_00315 0.59 +0.9
330,126 - CCNA_00315 0.59 -0.3
330,146 - CCNA_00315 0.60 -0.9
330,251 + CCNA_00315 0.67 -1.4
330,273 + CCNA_00315 0.69 -0.4
330,286 + CCNA_00315 0.69 -0.3
330,462 - CCNA_00315 0.81 +0.3
330,664 - -1.1
330,704 + +1.1
330,704 + +0.2
330,756 - +0.5
330,774 + +0.4
330,774 + +0.1
330,775 + +0.6
330,782 - +0.9
330,853 + -1.6
330,853 + +0.8
330,853 + +0.0
330,888 + -0.1
330,888 + +0.7
330,896 - CCNA_00316 0.10 -0.1
330,896 - CCNA_00316 0.10 -0.3
330,896 - CCNA_00316 0.10 -0.9
330,896 - CCNA_00316 0.10 +0.0
330,914 + CCNA_00316 0.12 +0.2
330,946 + CCNA_00316 0.15 +1.1
330,946 + CCNA_00316 0.15 +0.0
330,954 - CCNA_00316 0.16 -0.0
330,965 - CCNA_00316 0.17 -0.3
331,014 - CCNA_00316 0.21 +0.6
331,050 + CCNA_00316 0.24 +0.1
331,053 - CCNA_00316 0.24 +0.2
331,075 + CCNA_00316 0.26 +0.0
331,177 - CCNA_00316 0.35 +0.3
331,177 - CCNA_00316 0.35 +0.2
331,326 - CCNA_00316 0.48 +1.1
331,338 - CCNA_00316 0.49 +0.2
331,338 - CCNA_00316 0.49 +0.1
331,349 + CCNA_00316 0.50 +0.6
331,354 + CCNA_00316 0.51 +0.4
331,357 - CCNA_00316 0.51 -0.1
331,362 - CCNA_00316 0.52 -0.7
331,362 - CCNA_00316 0.52 +0.5
331,365 - CCNA_00316 0.52 -0.6
331,394 + CCNA_00316 0.54 +0.9
331,394 + CCNA_00316 0.54 -0.3
331,410 - CCNA_00316 0.56 +0.0
331,452 + CCNA_00316 0.60 -0.0
331,466 + CCNA_00316 0.61 -0.1
331,580 - CCNA_00316 0.71 +0.6
331,580 - CCNA_00316 0.71 +0.3
331,589 - CCNA_00316 0.72 -0.2
331,594 - CCNA_00316 0.72 +0.1
331,600 - CCNA_00316 0.73 +0.2
331,615 - CCNA_00316 0.74 +0.2
331,615 - CCNA_00316 0.74 +0.3
331,621 + CCNA_00316 0.74 -0.1
331,640 - CCNA_00316 0.76 +1.1
331,641 + CCNA_00316 0.76 -0.6
331,641 + CCNA_00316 0.76 -0.1
331,641 + CCNA_00316 0.76 -0.4
331,641 + CCNA_00316 0.76 -0.1
331,641 + CCNA_00316 0.76 -1.2
331,641 + CCNA_00316 0.76 +0.7
331,641 + CCNA_00316 0.76 -0.7
331,649 - CCNA_00316 0.77 +0.0
331,649 - CCNA_00316 0.77 +0.0
331,649 - CCNA_00316 0.77 +0.4
331,687 - CCNA_00316 0.80 +0.1
331,708 - CCNA_00316 0.82 +0.4
331,724 - CCNA_00316 0.84 +0.3
331,786 + CCNA_00316 0.89 -1.1
331,794 - CCNA_00316 0.90 +0.5
331,796 + CCNA_00316 0.90 -0.8
331,804 - -0.4
331,804 - +0.0
331,831 + -1.1
331,831 + +0.7
331,844 + +0.1
331,846 + +0.4
331,887 - +0.5

Or see this region's nucleotide sequence