Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00299

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00297 and CCNA_00298 overlap by 4 nucleotidesCCNA_00298 and CCNA_00299 are separated by 11 nucleotidesCCNA_00299 and CCNA_00300 are separated by 16 nucleotidesCCNA_00300 and CCNA_00301 are separated by 229 nucleotides CCNA_00297: CCNA_00297 - two-component response regulator, at 311,039 to 311,896 _00297 CCNA_00298: CCNA_00298 - hypothetical protein, at 311,893 to 312,666 _00298 CCNA_00299: CCNA_00299 - phosphoribosylamine--glycine ligase, at 312,678 to 313,961 _00299 CCNA_00300: CCNA_00300 - glyoxalase superfamily protein, at 313,978 to 314,385 _00300 CCNA_00301: CCNA_00301 - phosphotransferase family protein, at 314,615 to 315,697 _00301 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 311.678 kb on - strand, within CCNA_00297at 311.690 kb on - strand, within CCNA_00297at 311.711 kb on - strand, within CCNA_00297at 311.711 kb on - strand, within CCNA_00297at 311.744 kb on - strand, within CCNA_00297at 311.746 kb on + strand, within CCNA_00297at 311.749 kb on - strand, within CCNA_00297at 311.756 kb on + strand, within CCNA_00297at 311.757 kb on + strand, within CCNA_00297at 311.757 kb on - strand, within CCNA_00297at 311.765 kb on - strand, within CCNA_00297at 311.772 kb on + strand, within CCNA_00297at 311.772 kb on + strand, within CCNA_00297at 311.780 kb on - strand, within CCNA_00297at 311.783 kb on - strand, within CCNA_00297at 311.841 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.877 kb on + strandat 311.879 kb on + strandat 311.880 kb on - strandat 311.908 kb on - strandat 311.922 kb on + strandat 311.922 kb on + strandat 311.933 kb on - strandat 311.936 kb on + strandat 311.954 kb on + strandat 311.962 kb on - strandat 311.962 kb on - strandat 311.972 kb on + strand, within CCNA_00298at 311.977 kb on + strand, within CCNA_00298at 311.977 kb on + strand, within CCNA_00298at 311.982 kb on + strand, within CCNA_00298at 312.013 kb on - strand, within CCNA_00298at 312.033 kb on + strand, within CCNA_00298at 312.036 kb on - strand, within CCNA_00298at 312.047 kb on - strand, within CCNA_00298at 312.077 kb on + strand, within CCNA_00298at 312.077 kb on + strand, within CCNA_00298at 312.085 kb on - strand, within CCNA_00298at 312.122 kb on - strand, within CCNA_00298at 312.140 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.179 kb on + strand, within CCNA_00298at 312.180 kb on + strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.214 kb on + strand, within CCNA_00298at 312.214 kb on + strand, within CCNA_00298at 312.222 kb on - strand, within CCNA_00298at 312.222 kb on - strand, within CCNA_00298at 312.222 kb on - strand, within CCNA_00298at 312.223 kb on - strand, within CCNA_00298at 312.234 kb on - strand, within CCNA_00298at 312.251 kb on - strand, within CCNA_00298at 312.257 kb on + strand, within CCNA_00298at 312.261 kb on + strand, within CCNA_00298at 312.262 kb on + strand, within CCNA_00298at 312.265 kb on - strand, within CCNA_00298at 312.270 kb on - strand, within CCNA_00298at 312.290 kb on - strand, within CCNA_00298at 312.296 kb on - strand, within CCNA_00298at 312.303 kb on + strand, within CCNA_00298at 312.350 kb on - strand, within CCNA_00298at 312.358 kb on - strand, within CCNA_00298at 312.390 kb on - strand, within CCNA_00298at 312.422 kb on - strand, within CCNA_00298at 312.432 kb on + strand, within CCNA_00298at 312.432 kb on + strand, within CCNA_00298at 312.478 kb on - strand, within CCNA_00298at 312.484 kb on - strand, within CCNA_00298at 312.495 kb on - strand, within CCNA_00298at 312.519 kb on - strand, within CCNA_00298at 312.542 kb on - strand, within CCNA_00298at 312.545 kb on + strand, within CCNA_00298at 312.545 kb on + strand, within CCNA_00298at 312.545 kb on + strand, within CCNA_00298at 312.545 kb on + strand, within CCNA_00298at 312.553 kb on - strand, within CCNA_00298at 312.579 kb on - strand, within CCNA_00298at 312.597 kb on - strandat 312.608 kb on + strandat 312.616 kb on - strandat 312.662 kb on + strandat 312.734 kb on - strandat 312.813 kb on - strand, within CCNA_00299at 312.858 kb on + strand, within CCNA_00299at 312.865 kb on - strand, within CCNA_00299at 312.866 kb on - strand, within CCNA_00299at 312.876 kb on + strand, within CCNA_00299at 312.900 kb on - strand, within CCNA_00299at 312.938 kb on + strand, within CCNA_00299at 312.960 kb on - strand, within CCNA_00299at 312.981 kb on - strand, within CCNA_00299at 312.996 kb on - strand, within CCNA_00299at 313.012 kb on + strand, within CCNA_00299at 313.098 kb on - strand, within CCNA_00299at 313.309 kb on - strand, within CCNA_00299at 313.311 kb on + strand, within CCNA_00299at 313.311 kb on + strand, within CCNA_00299at 313.311 kb on + strand, within CCNA_00299at 313.311 kb on + strand, within CCNA_00299at 313.319 kb on - strand, within CCNA_00299at 313.319 kb on - strand, within CCNA_00299at 313.338 kb on + strand, within CCNA_00299at 313.355 kb on - strand, within CCNA_00299at 313.355 kb on - strand, within CCNA_00299at 313.355 kb on - strand, within CCNA_00299at 313.397 kb on - strand, within CCNA_00299at 313.415 kb on + strand, within CCNA_00299at 313.415 kb on + strand, within CCNA_00299at 313.415 kb on + strand, within CCNA_00299at 313.420 kb on + strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.438 kb on - strand, within CCNA_00299at 313.443 kb on + strand, within CCNA_00299at 313.472 kb on - strand, within CCNA_00299at 313.484 kb on + strand, within CCNA_00299at 313.485 kb on + strand, within CCNA_00299at 313.518 kb on - strand, within CCNA_00299at 313.523 kb on + strand, within CCNA_00299at 313.540 kb on - strand, within CCNA_00299at 313.567 kb on + strand, within CCNA_00299at 313.569 kb on - strand, within CCNA_00299at 313.575 kb on - strand, within CCNA_00299at 313.631 kb on + strand, within CCNA_00299at 313.723 kb on + strand, within CCNA_00299at 313.769 kb on + strand, within CCNA_00299at 313.777 kb on - strand, within CCNA_00299at 313.803 kb on + strand, within CCNA_00299at 313.809 kb on - strand, within CCNA_00299at 313.811 kb on + strand, within CCNA_00299at 313.811 kb on - strand, within CCNA_00299at 313.835 kb on + strandat 313.945 kb on + strandat 313.981 kb on + strandat 314.025 kb on + strand, within CCNA_00300at 314.040 kb on - strand, within CCNA_00300at 314.040 kb on - strand, within CCNA_00300at 314.064 kb on - strand, within CCNA_00300at 314.073 kb on - strand, within CCNA_00300at 314.084 kb on + strand, within CCNA_00300at 314.127 kb on + strand, within CCNA_00300at 314.127 kb on + strand, within CCNA_00300at 314.148 kb on + strand, within CCNA_00300at 314.153 kb on + strand, within CCNA_00300at 314.153 kb on + strand, within CCNA_00300at 314.158 kb on + strand, within CCNA_00300at 314.158 kb on + strand, within CCNA_00300at 314.158 kb on + strand, within CCNA_00300at 314.161 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.176 kb on - strand, within CCNA_00300at 314.210 kb on - strand, within CCNA_00300at 314.220 kb on - strand, within CCNA_00300at 314.220 kb on - strand, within CCNA_00300at 314.220 kb on - strand, within CCNA_00300at 314.220 kb on - strand, within CCNA_00300at 314.223 kb on + strand, within CCNA_00300at 314.239 kb on + strand, within CCNA_00300at 314.247 kb on - strand, within CCNA_00300at 314.254 kb on - strand, within CCNA_00300at 314.254 kb on - strand, within CCNA_00300at 314.257 kb on + strand, within CCNA_00300at 314.265 kb on - strand, within CCNA_00300at 314.302 kb on + strand, within CCNA_00300at 314.347 kb on - strandat 314.358 kb on - strandat 314.363 kb on + strandat 314.371 kb on - strandat 314.372 kb on + strandat 314.400 kb on - strandat 314.452 kb on + strandat 314.453 kb on - strandat 314.471 kb on - strandat 314.504 kb on - strandat 314.527 kb on - strandat 314.561 kb on + strandat 314.569 kb on - strandat 314.571 kb on - strandat 314.596 kb on + strandat 314.680 kb on + strandat 314.734 kb on - strand, within CCNA_00301at 314.740 kb on - strand, within CCNA_00301at 314.745 kb on + strand, within CCNA_00301at 314.761 kb on + strand, within CCNA_00301at 314.761 kb on + strand, within CCNA_00301at 314.769 kb on - strand, within CCNA_00301at 314.769 kb on - strand, within CCNA_00301at 314.788 kb on - strand, within CCNA_00301at 314.851 kb on + strand, within CCNA_00301at 314.851 kb on + strand, within CCNA_00301at 314.854 kb on - strand, within CCNA_00301at 314.859 kb on - strand, within CCNA_00301at 314.859 kb on - strand, within CCNA_00301at 314.884 kb on + strand, within CCNA_00301at 314.886 kb on - strand, within CCNA_00301at 314.894 kb on + strand, within CCNA_00301at 314.894 kb on + strand, within CCNA_00301at 314.899 kb on + strand, within CCNA_00301at 314.902 kb on - strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.926 kb on + strand, within CCNA_00301at 314.926 kb on + strand, within CCNA_00301at 314.926 kb on + strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.945 kb on + strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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311,678 - CCNA_00297 0.74 -0.2
311,690 - CCNA_00297 0.76 +0.3
311,711 - CCNA_00297 0.78 +0.1
311,711 - CCNA_00297 0.78 -0.8
311,744 - CCNA_00297 0.82 +0.4
311,746 + CCNA_00297 0.82 -0.2
311,749 - CCNA_00297 0.83 -0.2
311,756 + CCNA_00297 0.84 -0.1
311,757 + CCNA_00297 0.84 +0.3
311,757 - CCNA_00297 0.84 +0.8
311,765 - CCNA_00297 0.85 -0.2
311,772 + CCNA_00297 0.85 +0.3
311,772 + CCNA_00297 0.85 +0.4
311,780 - CCNA_00297 0.86 +0.4
311,783 - CCNA_00297 0.87 +1.1
311,841 + -1.5
311,846 + -1.2
311,846 + -0.8
311,846 + -0.9
311,854 - +0.4
311,854 - +0.2
311,854 - +1.2
311,854 - +0.6
311,854 - +0.6
311,877 + +0.5
311,879 + +0.1
311,880 - -0.1
311,908 - +0.2
311,922 + -0.7
311,922 + +0.1
311,933 - +0.0
311,936 + -1.5
311,954 + -1.0
311,962 - +0.1
311,962 - +1.0
311,972 + CCNA_00298 0.10 -1.1
311,977 + CCNA_00298 0.11 -0.2
311,977 + CCNA_00298 0.11 +0.4
311,982 + CCNA_00298 0.11 -0.1
312,013 - CCNA_00298 0.16 +0.3
312,033 + CCNA_00298 0.18 +0.5
312,036 - CCNA_00298 0.18 +0.3
312,047 - CCNA_00298 0.20 +0.6
312,077 + CCNA_00298 0.24 +0.5
312,077 + CCNA_00298 0.24 -0.1
312,085 - CCNA_00298 0.25 +0.0
312,122 - CCNA_00298 0.30 +0.0
312,140 + CCNA_00298 0.32 -0.1
312,155 + CCNA_00298 0.34 +0.2
312,155 + CCNA_00298 0.34 -0.7
312,155 + CCNA_00298 0.34 -1.1
312,163 - CCNA_00298 0.35 -0.2
312,163 - CCNA_00298 0.35 -0.3
312,179 + CCNA_00298 0.37 -0.9
312,180 + CCNA_00298 0.37 -2.5
312,188 - CCNA_00298 0.38 -0.4
312,188 - CCNA_00298 0.38 -1.4
312,188 - CCNA_00298 0.38 -0.8
312,188 - CCNA_00298 0.38 -1.3
312,188 - CCNA_00298 0.38 +0.4
312,214 + CCNA_00298 0.41 -1.3
312,214 + CCNA_00298 0.41 -0.9
312,222 - CCNA_00298 0.43 -0.4
312,222 - CCNA_00298 0.43 -0.9
312,222 - CCNA_00298 0.43 -1.9
312,223 - CCNA_00298 0.43 +0.1
312,234 - CCNA_00298 0.44 -0.8
312,251 - CCNA_00298 0.46 -0.2
312,257 + CCNA_00298 0.47 +0.1
312,261 + CCNA_00298 0.48 -0.7
312,262 + CCNA_00298 0.48 +0.8
312,265 - CCNA_00298 0.48 +0.7
312,270 - CCNA_00298 0.49 +0.1
312,290 - CCNA_00298 0.51 -0.7
312,296 - CCNA_00298 0.52 +0.9
312,303 + CCNA_00298 0.53 -0.1
312,350 - CCNA_00298 0.59 -0.0
312,358 - CCNA_00298 0.60 -0.6
312,390 - CCNA_00298 0.64 -0.8
312,422 - CCNA_00298 0.68 -1.0
312,432 + CCNA_00298 0.70 +1.5
312,432 + CCNA_00298 0.70 +0.0
312,478 - CCNA_00298 0.76 -0.6
312,484 - CCNA_00298 0.76 +0.7
312,495 - CCNA_00298 0.78 -0.5
312,519 - CCNA_00298 0.81 +0.5
312,542 - CCNA_00298 0.84 -1.0
312,545 + CCNA_00298 0.84 +0.3
312,545 + CCNA_00298 0.84 +0.4
312,545 + CCNA_00298 0.84 +0.1
312,545 + CCNA_00298 0.84 +2.2
312,553 - CCNA_00298 0.85 -0.5
312,579 - CCNA_00298 0.89 -0.5
312,597 - -0.4
312,608 + -0.3
312,616 - -0.4
312,662 + -0.7
312,734 - -1.9
312,813 - CCNA_00299 0.11 +0.1
312,858 + CCNA_00299 0.14 +0.5
312,865 - CCNA_00299 0.15 -1.1
312,866 - CCNA_00299 0.15 -1.4
312,876 + CCNA_00299 0.15 -0.3
312,900 - CCNA_00299 0.17 -1.8
312,938 + CCNA_00299 0.20 +0.2
312,960 - CCNA_00299 0.22 -0.7
312,981 - CCNA_00299 0.24 -0.7
312,996 - CCNA_00299 0.25 -3.1
313,012 + CCNA_00299 0.26 -1.1
313,098 - CCNA_00299 0.33 -0.4
313,309 - CCNA_00299 0.49 -0.0
313,311 + CCNA_00299 0.49 -0.6
313,311 + CCNA_00299 0.49 -2.7
313,311 + CCNA_00299 0.49 -0.4
313,311 + CCNA_00299 0.49 -0.2
313,319 - CCNA_00299 0.50 -0.0
313,319 - CCNA_00299 0.50 -0.7
313,338 + CCNA_00299 0.51 -1.8
313,355 - CCNA_00299 0.53 -3.2
313,355 - CCNA_00299 0.53 -2.6
313,355 - CCNA_00299 0.53 -0.2
313,397 - CCNA_00299 0.56 -0.2
313,415 + CCNA_00299 0.57 -0.3
313,415 + CCNA_00299 0.57 +0.4
313,415 + CCNA_00299 0.57 -0.6
313,420 + CCNA_00299 0.58 -0.5
313,423 - CCNA_00299 0.58 -1.6
313,438 - CCNA_00299 0.59 -1.0
313,443 + CCNA_00299 0.60 -1.1
313,472 - CCNA_00299 0.62 -0.0
313,484 + CCNA_00299 0.63 +0.6
313,485 + CCNA_00299 0.63 -0.4
313,518 - CCNA_00299 0.65 -0.5
313,523 + CCNA_00299 0.66 +0.4
313,540 - CCNA_00299 0.67 -1.0
313,567 + CCNA_00299 0.69 +0.8
313,569 - CCNA_00299 0.69 -0.8
313,575 - CCNA_00299 0.70 -1.3
313,631 + CCNA_00299 0.74 -0.6
313,723 + CCNA_00299 0.81 -0.2
313,769 + CCNA_00299 0.85 -0.4
313,777 - CCNA_00299 0.86 -0.3
313,803 + CCNA_00299 0.88 +0.2
313,809 - CCNA_00299 0.88 -0.8
313,811 + CCNA_00299 0.88 -0.8
313,811 - CCNA_00299 0.88 -2.2
313,835 + +1.6
313,945 + -0.4
313,981 + +0.6
314,025 + CCNA_00300 0.12 -0.6
314,040 - CCNA_00300 0.15 +0.5
314,040 - CCNA_00300 0.15 +0.1
314,064 - CCNA_00300 0.21 +0.3
314,073 - CCNA_00300 0.23 -0.0
314,084 + CCNA_00300 0.26 -0.4
314,127 + CCNA_00300 0.37 +0.5
314,127 + CCNA_00300 0.37 +0.5
314,148 + CCNA_00300 0.42 -0.6
314,153 + CCNA_00300 0.43 -1.1
314,153 + CCNA_00300 0.43 -0.5
314,158 + CCNA_00300 0.44 +2.0
314,158 + CCNA_00300 0.44 -0.3
314,158 + CCNA_00300 0.44 -0.1
314,161 - CCNA_00300 0.45 -0.6
314,166 - CCNA_00300 0.46 -0.0
314,166 - CCNA_00300 0.46 -1.2
314,166 - CCNA_00300 0.46 -0.6
314,176 - CCNA_00300 0.49 +0.3
314,210 - CCNA_00300 0.57 -0.3
314,220 - CCNA_00300 0.59 -0.1
314,220 - CCNA_00300 0.59 +0.5
314,220 - CCNA_00300 0.59 +0.3
314,220 - CCNA_00300 0.59 -0.1
314,223 + CCNA_00300 0.60 -1.0
314,239 + CCNA_00300 0.64 +0.2
314,247 - CCNA_00300 0.66 -0.8
314,254 - CCNA_00300 0.68 -0.1
314,254 - CCNA_00300 0.68 -0.2
314,257 + CCNA_00300 0.68 -0.3
314,265 - CCNA_00300 0.70 -0.7
314,302 + CCNA_00300 0.79 +0.0
314,347 - -0.5
314,358 - +0.2
314,363 + -0.2
314,371 - -0.0
314,372 + -0.9
314,400 - -0.0
314,452 + -0.1
314,453 - -0.5
314,471 - +2.0
314,504 - -0.3
314,527 - +0.0
314,561 + -0.0
314,569 - +0.5
314,571 - +1.0
314,596 + +0.1
314,680 + -0.7
314,734 - CCNA_00301 0.11 -0.3
314,740 - CCNA_00301 0.12 -0.1
314,745 + CCNA_00301 0.12 -0.1
314,761 + CCNA_00301 0.13 +0.2
314,761 + CCNA_00301 0.13 +0.2
314,769 - CCNA_00301 0.14 +0.6
314,769 - CCNA_00301 0.14 +0.9
314,788 - CCNA_00301 0.16 +0.1
314,851 + CCNA_00301 0.22 +0.5
314,851 + CCNA_00301 0.22 -1.5
314,854 - CCNA_00301 0.22 -0.5
314,859 - CCNA_00301 0.23 -1.1
314,859 - CCNA_00301 0.23 +0.5
314,884 + CCNA_00301 0.25 +0.0
314,886 - CCNA_00301 0.25 -0.2
314,894 + CCNA_00301 0.26 -0.5
314,894 + CCNA_00301 0.26 -0.0
314,899 + CCNA_00301 0.26 -0.7
314,902 - CCNA_00301 0.27 -0.0
314,907 - CCNA_00301 0.27 +0.2
314,907 - CCNA_00301 0.27 +0.4
314,926 + CCNA_00301 0.29 -0.7
314,926 + CCNA_00301 0.29 +0.9
314,926 + CCNA_00301 0.29 -0.3
314,934 - CCNA_00301 0.29 -0.2
314,934 - CCNA_00301 0.29 -0.3
314,934 - CCNA_00301 0.29 +0.0
314,938 + CCNA_00301 0.30 +0.0
314,938 + CCNA_00301 0.30 -0.2
314,938 + CCNA_00301 0.30 -0.9
314,945 + CCNA_00301 0.30 -0.0
314,946 - CCNA_00301 0.31 +0.4

Or see this region's nucleotide sequence