Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00293 and CCNA_00294 are separated by 59 nucleotides CCNA_00294 and CCNA_00295 are separated by 25 nucleotides CCNA_00295 and CCNA_00296 are separated by 21 nucleotides
CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750
_00293
CCNA_00294: CCNA_00294 - phosphate transport ATP-binding protein pstB, at 308,810 to 309,634
_00294
CCNA_00295: CCNA_00295 - phosphate transport system protein phoU, at 309,660 to 310,352
_00295
CCNA_00296: CCNA_00296 - phosphate regulon response regulator PhoB, at 310,374 to 311,066
_00296
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.124 kb on + strand, within CCNA_00293 at 308.136 kb on + strand, within CCNA_00293 at 308.172 kb on - strand, within CCNA_00293 at 308.258 kb on + strand, within CCNA_00293 at 308.442 kb on + strand, within CCNA_00293 at 308.652 kb on - strand at 308.687 kb on - strand at 308.751 kb on - strand at 308.804 kb on - strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.895 kb on - strand, within CCNA_00294 at 309.045 kb on + strand, within CCNA_00294 at 309.248 kb on + strand, within CCNA_00294 at 309.550 kb on + strand, within CCNA_00294 at 310.316 kb on - strand at 310.331 kb on + strand at 310.332 kb on - strand at 310.346 kb on - strand at 310.361 kb on - strand at 310.394 kb on + strand at 310.403 kb on - strand at 310.418 kb on - strand at 310.485 kb on + strand, within CCNA_00296 at 310.493 kb on - strand, within CCNA_00296 at 310.493 kb on - strand, within CCNA_00296 at 310.495 kb on + strand, within CCNA_00296 at 310.498 kb on - strand, within CCNA_00296 at 310.510 kb on + strand, within CCNA_00296 at 310.525 kb on + strand, within CCNA_00296 at 310.547 kb on + strand, within CCNA_00296 at 310.548 kb on + strand, within CCNA_00296 at 310.549 kb on - strand, within CCNA_00296 at 310.556 kb on - strand, within CCNA_00296 at 310.602 kb on + strand, within CCNA_00296
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 308,124 + CCNA_00293 0.52 +0.1 308,136 + CCNA_00293 0.53 -0.0 308,172 - CCNA_00293 0.55 +0.5 308,258 + CCNA_00293 0.62 -2.7 308,442 + CCNA_00293 0.76 -0.7 308,652 - +1.1 308,687 - +0.3 308,751 - -1.0 308,804 - +0.3 308,806 + -0.4 308,806 + -0.0 308,806 + +0.4 308,806 + -0.0 308,806 + +0.5 308,806 + -0.3 308,806 + +0.7 308,806 + -0.7 308,814 - -0.7 308,814 - -0.7 308,814 - -1.6 308,814 - -1.2 308,814 - -0.9 308,895 - CCNA_00294 0.10 +1.2 309,045 + CCNA_00294 0.28 -1.1 309,248 + CCNA_00294 0.53 -1.1 309,550 + CCNA_00294 0.90 -1.1 310,316 - -0.7 310,331 + +1.8 310,332 - -0.3 310,346 - -0.1 310,361 - +1.2 310,394 + -1.1 310,403 - -1.0 310,418 - +1.7 310,485 + CCNA_00296 0.16 -1.6 310,493 - CCNA_00296 0.17 -1.7 310,493 - CCNA_00296 0.17 +0.1 310,495 + CCNA_00296 0.17 +0.5 310,498 - CCNA_00296 0.18 -1.4 310,510 + CCNA_00296 0.20 +0.1 310,525 + CCNA_00296 0.22 -1.7 310,547 + CCNA_00296 0.25 -0.6 310,548 + CCNA_00296 0.25 -1.0 310,549 - CCNA_00296 0.25 -0.2 310,556 - CCNA_00296 0.26 +0.6 310,602 + CCNA_00296 0.33 -1.3
Or see this region's nucleotide sequence