Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00273

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00272 and CCNA_00273 are separated by 8 nucleotidesCCNA_00273 and CCNA_00274 are separated by 340 nucleotidesCCNA_00274 and CCNA_00275 are separated by 83 nucleotides CCNA_00272: CCNA_00272 - RmuC family protein, at 285,476 to 286,765 _00272 CCNA_00273: CCNA_00273 - peptide deformylase, at 286,774 to 287,295 _00273 CCNA_00274: CCNA_00274 - hypothetical protein, at 287,636 to 287,998 _00274 CCNA_00275: CCNA_00275 - transposase, DDE family, at 288,082 to 289,527 _00275 Position (kb) 286 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.824 kb on + strand, within CCNA_00272at 285.832 kb on - strand, within CCNA_00272at 285.837 kb on - strand, within CCNA_00272at 285.842 kb on + strand, within CCNA_00272at 285.844 kb on - strand, within CCNA_00272at 285.844 kb on - strand, within CCNA_00272at 285.886 kb on - strand, within CCNA_00272at 285.886 kb on - strand, within CCNA_00272at 285.886 kb on - strand, within CCNA_00272at 285.901 kb on - strand, within CCNA_00272at 285.910 kb on - strand, within CCNA_00272at 285.911 kb on - strand, within CCNA_00272at 285.915 kb on + strand, within CCNA_00272at 285.935 kb on - strand, within CCNA_00272at 285.949 kb on + strand, within CCNA_00272at 286.007 kb on - strand, within CCNA_00272at 286.016 kb on + strand, within CCNA_00272at 286.016 kb on + strand, within CCNA_00272at 286.016 kb on + strand, within CCNA_00272at 286.038 kb on + strand, within CCNA_00272at 286.043 kb on + strand, within CCNA_00272at 286.056 kb on - strand, within CCNA_00272at 286.056 kb on - strand, within CCNA_00272at 286.056 kb on - strand, within CCNA_00272at 286.087 kb on + strand, within CCNA_00272at 286.115 kb on + strand, within CCNA_00272at 286.123 kb on - strand, within CCNA_00272at 286.125 kb on - strand, within CCNA_00272at 286.165 kb on + strand, within CCNA_00272at 286.168 kb on - strand, within CCNA_00272at 286.176 kb on + strand, within CCNA_00272at 286.181 kb on + strand, within CCNA_00272at 286.212 kb on + strand, within CCNA_00272at 286.212 kb on + strand, within CCNA_00272at 286.246 kb on + strand, within CCNA_00272at 286.257 kb on + strand, within CCNA_00272at 286.342 kb on - strand, within CCNA_00272at 286.346 kb on - strand, within CCNA_00272at 286.362 kb on - strand, within CCNA_00272at 286.367 kb on + strand, within CCNA_00272at 286.367 kb on + strand, within CCNA_00272at 286.375 kb on - strand, within CCNA_00272at 286.380 kb on + strand, within CCNA_00272at 286.390 kb on + strand, within CCNA_00272at 286.398 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.486 kb on - strand, within CCNA_00272at 286.496 kb on - strand, within CCNA_00272at 286.504 kb on - strand, within CCNA_00272at 286.506 kb on - strand, within CCNA_00272at 286.517 kb on - strand, within CCNA_00272at 286.517 kb on - strand, within CCNA_00272at 286.543 kb on - strand, within CCNA_00272at 286.547 kb on + strand, within CCNA_00272at 286.547 kb on + strand, within CCNA_00272at 286.555 kb on - strand, within CCNA_00272at 286.558 kb on - strand, within CCNA_00272at 286.565 kb on + strand, within CCNA_00272at 286.577 kb on - strand, within CCNA_00272at 286.604 kb on + strand, within CCNA_00272at 286.611 kb on - strand, within CCNA_00272at 286.612 kb on - strand, within CCNA_00272at 286.612 kb on - strand, within CCNA_00272at 286.631 kb on - strand, within CCNA_00272at 286.659 kb on - strandat 286.672 kb on + strandat 286.708 kb on + strandat 286.708 kb on + strandat 286.716 kb on - strandat 286.724 kb on - strandat 286.778 kb on - strandat 286.778 kb on - strandat 287.213 kb on - strand, within CCNA_00273at 287.268 kb on + strandat 287.276 kb on - strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.298 kb on - strandat 287.298 kb on - strandat 287.298 kb on - strandat 287.308 kb on + strandat 287.337 kb on + strandat 287.389 kb on - strandat 287.433 kb on + strandat 287.465 kb on - strandat 287.493 kb on - strandat 287.521 kb on + strandat 287.524 kb on - strandat 287.531 kb on + strandat 287.531 kb on + strandat 287.534 kb on - strandat 287.536 kb on + strandat 287.536 kb on + strandat 287.536 kb on + strandat 287.539 kb on - strandat 287.539 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.559 kb on - strandat 287.581 kb on - strandat 287.608 kb on + strandat 287.631 kb on + strandat 287.639 kb on + strandat 287.639 kb on - strandat 287.641 kb on + strandat 287.647 kb on - strandat 287.691 kb on - strand, within CCNA_00274at 287.734 kb on - strand, within CCNA_00274at 287.744 kb on - strand, within CCNA_00274at 287.748 kb on + strand, within CCNA_00274at 287.748 kb on + strand, within CCNA_00274at 287.750 kb on + strand, within CCNA_00274at 287.750 kb on + strand, within CCNA_00274at 287.750 kb on + strand, within CCNA_00274at 287.750 kb on + strand, within CCNA_00274at 287.750 kb on + strand, within CCNA_00274at 287.750 kb on + strand, within CCNA_00274at 287.758 kb on - strand, within CCNA_00274at 287.791 kb on + strand, within CCNA_00274at 287.792 kb on - strand, within CCNA_00274at 287.793 kb on + strand, within CCNA_00274at 287.882 kb on + strand, within CCNA_00274at 287.890 kb on - strand, within CCNA_00274at 287.902 kb on + strand, within CCNA_00274at 287.902 kb on + strand, within CCNA_00274at 287.903 kb on + strand, within CCNA_00274at 287.915 kb on - strand, within CCNA_00274at 287.917 kb on - strand, within CCNA_00274at 287.944 kb on + strand, within CCNA_00274at 287.955 kb on + strand, within CCNA_00274at 287.955 kb on + strand, within CCNA_00274at 287.960 kb on - strand, within CCNA_00274at 287.992 kb on + strandat 287.995 kb on - strandat 287.995 kb on - strandat 288.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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285,824 + CCNA_00272 0.27 +0.1
285,832 - CCNA_00272 0.28 -0.7
285,837 - CCNA_00272 0.28 -0.6
285,842 + CCNA_00272 0.28 -0.1
285,844 - CCNA_00272 0.29 +0.2
285,844 - CCNA_00272 0.29 +0.4
285,886 - CCNA_00272 0.32 +0.1
285,886 - CCNA_00272 0.32 -0.3
285,886 - CCNA_00272 0.32 +0.2
285,901 - CCNA_00272 0.33 +0.9
285,910 - CCNA_00272 0.34 +0.9
285,911 - CCNA_00272 0.34 -0.3
285,915 + CCNA_00272 0.34 -0.9
285,935 - CCNA_00272 0.36 -0.0
285,949 + CCNA_00272 0.37 +1.5
286,007 - CCNA_00272 0.41 +0.1
286,016 + CCNA_00272 0.42 -0.4
286,016 + CCNA_00272 0.42 +2.1
286,016 + CCNA_00272 0.42 +0.5
286,038 + CCNA_00272 0.44 +0.5
286,043 + CCNA_00272 0.44 +0.7
286,056 - CCNA_00272 0.45 +0.3
286,056 - CCNA_00272 0.45 +0.0
286,056 - CCNA_00272 0.45 +1.1
286,087 + CCNA_00272 0.47 +0.9
286,115 + CCNA_00272 0.50 -0.1
286,123 - CCNA_00272 0.50 -0.6
286,125 - CCNA_00272 0.50 +0.1
286,165 + CCNA_00272 0.53 +0.2
286,168 - CCNA_00272 0.54 -0.1
286,176 + CCNA_00272 0.54 -0.3
286,181 + CCNA_00272 0.55 +0.5
286,212 + CCNA_00272 0.57 -0.1
286,212 + CCNA_00272 0.57 +0.8
286,246 + CCNA_00272 0.60 -0.1
286,257 + CCNA_00272 0.61 -0.0
286,342 - CCNA_00272 0.67 +1.1
286,346 - CCNA_00272 0.67 -1.2
286,362 - CCNA_00272 0.69 -0.4
286,367 + CCNA_00272 0.69 +0.2
286,367 + CCNA_00272 0.69 -0.1
286,375 - CCNA_00272 0.70 -3.3
286,380 + CCNA_00272 0.70 -0.9
286,390 + CCNA_00272 0.71 +0.0
286,398 + CCNA_00272 0.71 +0.6
286,417 + CCNA_00272 0.73 -0.4
286,417 + CCNA_00272 0.73 -0.3
286,417 + CCNA_00272 0.73 -0.6
286,417 + CCNA_00272 0.73 -0.2
286,417 + CCNA_00272 0.73 +0.3
286,417 + CCNA_00272 0.73 -0.0
286,417 + CCNA_00272 0.73 +0.6
286,425 - CCNA_00272 0.74 -1.6
286,425 - CCNA_00272 0.74 +0.9
286,425 - CCNA_00272 0.74 -0.4
286,425 - CCNA_00272 0.74 -0.2
286,425 - CCNA_00272 0.74 -0.5
286,486 - CCNA_00272 0.78 +0.3
286,496 - CCNA_00272 0.79 -0.3
286,504 - CCNA_00272 0.80 -0.4
286,506 - CCNA_00272 0.80 -0.2
286,517 - CCNA_00272 0.81 -0.1
286,517 - CCNA_00272 0.81 -0.1
286,543 - CCNA_00272 0.83 -0.7
286,547 + CCNA_00272 0.83 +0.0
286,547 + CCNA_00272 0.83 -0.2
286,555 - CCNA_00272 0.84 -0.7
286,558 - CCNA_00272 0.84 +0.4
286,565 + CCNA_00272 0.84 +0.3
286,577 - CCNA_00272 0.85 -0.8
286,604 + CCNA_00272 0.87 -0.2
286,611 - CCNA_00272 0.88 -2.3
286,612 - CCNA_00272 0.88 -0.6
286,612 - CCNA_00272 0.88 +0.8
286,631 - CCNA_00272 0.90 -0.8
286,659 - -0.4
286,672 + +0.4
286,708 + -0.1
286,708 + +0.1
286,716 - +0.1
286,724 - +0.5
286,778 - -0.8
286,778 - +1.1
287,213 - CCNA_00273 0.84 -0.6
287,268 + -0.1
287,276 - +0.9
287,290 + +0.3
287,290 + +0.2
287,290 + +0.3
287,290 + +0.0
287,290 + -0.2
287,298 - +0.1
287,298 - -1.3
287,298 - +0.2
287,308 + +0.1
287,337 + -0.0
287,389 - -1.3
287,433 + +0.1
287,465 - +0.3
287,493 - -1.7
287,521 + +0.2
287,524 - -0.5
287,531 + +0.6
287,531 + -1.1
287,534 - -0.3
287,536 + +0.0
287,536 + -0.8
287,536 + +0.1
287,539 - +0.1
287,539 - -0.3
287,544 - -0.0
287,544 - +0.3
287,544 - -0.2
287,544 - +1.5
287,544 - -1.9
287,559 - +0.2
287,581 - +0.0
287,608 + +0.5
287,631 + +0.4
287,639 + -0.9
287,639 - -0.3
287,641 + +0.6
287,647 - -0.6
287,691 - CCNA_00274 0.15 +0.2
287,734 - CCNA_00274 0.27 +0.6
287,744 - CCNA_00274 0.30 +0.5
287,748 + CCNA_00274 0.31 -1.0
287,748 + CCNA_00274 0.31 -1.2
287,750 + CCNA_00274 0.31 -1.5
287,750 + CCNA_00274 0.31 -0.2
287,750 + CCNA_00274 0.31 +0.1
287,750 + CCNA_00274 0.31 +2.0
287,750 + CCNA_00274 0.31 +0.1
287,750 + CCNA_00274 0.31 -0.0
287,758 - CCNA_00274 0.34 -0.3
287,791 + CCNA_00274 0.43 -1.0
287,792 - CCNA_00274 0.43 -1.0
287,793 + CCNA_00274 0.43 -0.3
287,882 + CCNA_00274 0.68 -0.7
287,890 - CCNA_00274 0.70 -0.1
287,902 + CCNA_00274 0.73 -0.6
287,902 + CCNA_00274 0.73 -0.5
287,903 + CCNA_00274 0.74 -0.6
287,915 - CCNA_00274 0.77 +0.1
287,917 - CCNA_00274 0.77 -0.0
287,944 + CCNA_00274 0.85 -0.1
287,955 + CCNA_00274 0.88 +0.9
287,955 + CCNA_00274 0.88 -0.2
287,960 - CCNA_00274 0.89 -1.3
287,992 + +1.5
287,995 - -0.7
287,995 - +0.1
288,057 - +0.1

Or see this region's nucleotide sequence