Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00209

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00208 and CCNA_00209 are separated by 80 nucleotidesCCNA_00209 and CCNA_00210 are separated by 187 nucleotides CCNA_00208: CCNA_00208 - type 1 glutamine amidotransferase (GATase1)-like domain protein, at 222,283 to 223,272 _00208 CCNA_00209: CCNA_00209 - undecaprenyl-phosphomannose:protein mannosyltransferase, at 223,353 to 224,927 _00209 CCNA_00210: CCNA_00210 - TonB-dependent receptor, at 225,115 to 227,526 _00210 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 222.403 kb on + strand, within CCNA_00208at 222.411 kb on - strand, within CCNA_00208at 222.411 kb on - strand, within CCNA_00208at 222.421 kb on - strand, within CCNA_00208at 222.511 kb on + strand, within CCNA_00208at 222.519 kb on - strand, within CCNA_00208at 222.523 kb on + strand, within CCNA_00208at 222.546 kb on - strand, within CCNA_00208at 222.547 kb on - strand, within CCNA_00208at 222.573 kb on - strand, within CCNA_00208at 222.584 kb on + strand, within CCNA_00208at 222.584 kb on + strand, within CCNA_00208at 222.592 kb on - strand, within CCNA_00208at 222.603 kb on + strand, within CCNA_00208at 222.603 kb on + strand, within CCNA_00208at 222.654 kb on - strand, within CCNA_00208at 222.674 kb on - strand, within CCNA_00208at 222.707 kb on + strand, within CCNA_00208at 222.737 kb on - strand, within CCNA_00208at 222.753 kb on - strand, within CCNA_00208at 222.755 kb on - strand, within CCNA_00208at 222.760 kb on - strand, within CCNA_00208at 222.777 kb on - strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.838 kb on - strand, within CCNA_00208at 222.838 kb on - strand, within CCNA_00208at 222.838 kb on - strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.896 kb on - strand, within CCNA_00208at 222.913 kb on - strand, within CCNA_00208at 222.916 kb on + strand, within CCNA_00208at 222.917 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.969 kb on - strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 223.011 kb on - strand, within CCNA_00208at 223.020 kb on - strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.038 kb on - strand, within CCNA_00208at 223.043 kb on - strand, within CCNA_00208at 223.047 kb on - strand, within CCNA_00208at 223.056 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.090 kb on - strand, within CCNA_00208at 223.100 kb on - strand, within CCNA_00208at 223.100 kb on - strand, within CCNA_00208at 223.127 kb on + strand, within CCNA_00208at 223.127 kb on + strand, within CCNA_00208at 223.127 kb on + strand, within CCNA_00208at 223.135 kb on - strand, within CCNA_00208at 223.135 kb on - strand, within CCNA_00208at 223.135 kb on - strand, within CCNA_00208at 223.191 kb on - strandat 223.201 kb on - strandat 223.290 kb on + strandat 223.310 kb on + strandat 223.336 kb on + strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.374 kb on - strandat 223.374 kb on - strandat 223.374 kb on - strandat 223.374 kb on - strandat 223.426 kb on + strandat 223.426 kb on + strandat 223.434 kb on - strandat 223.434 kb on - strandat 223.434 kb on - strandat 223.456 kb on + strandat 223.456 kb on + strandat 223.464 kb on - strandat 223.498 kb on + strandat 223.506 kb on - strandat 223.506 kb on - strandat 223.602 kb on + strand, within CCNA_00209at 223.610 kb on - strand, within CCNA_00209at 223.610 kb on - strand, within CCNA_00209at 223.614 kb on + strand, within CCNA_00209at 223.653 kb on - strand, within CCNA_00209at 223.682 kb on - strand, within CCNA_00209at 223.737 kb on - strand, within CCNA_00209at 223.739 kb on + strand, within CCNA_00209at 223.747 kb on - strand, within CCNA_00209at 223.758 kb on - strand, within CCNA_00209at 223.765 kb on - strand, within CCNA_00209at 223.778 kb on - strand, within CCNA_00209at 223.784 kb on + strand, within CCNA_00209at 223.792 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.911 kb on + strand, within CCNA_00209at 223.962 kb on + strand, within CCNA_00209at 223.987 kb on + strand, within CCNA_00209at 223.987 kb on + strand, within CCNA_00209at 224.049 kb on - strand, within CCNA_00209at 224.109 kb on + strand, within CCNA_00209at 224.109 kb on + strand, within CCNA_00209at 224.117 kb on - strand, within CCNA_00209at 224.134 kb on - strand, within CCNA_00209at 224.139 kb on - strand, within CCNA_00209at 224.197 kb on - strand, within CCNA_00209at 224.223 kb on + strand, within CCNA_00209at 224.223 kb on + strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.276 kb on + strand, within CCNA_00209at 224.301 kb on - strand, within CCNA_00209at 224.325 kb on + strand, within CCNA_00209at 224.365 kb on + strand, within CCNA_00209at 224.373 kb on - strand, within CCNA_00209at 224.378 kb on - strand, within CCNA_00209at 224.400 kb on - strand, within CCNA_00209at 224.429 kb on + strand, within CCNA_00209at 224.456 kb on + strand, within CCNA_00209at 224.484 kb on + strand, within CCNA_00209at 224.484 kb on + strand, within CCNA_00209at 224.485 kb on + strand, within CCNA_00209at 224.498 kb on - strand, within CCNA_00209at 224.502 kb on - strand, within CCNA_00209at 224.537 kb on + strand, within CCNA_00209at 224.550 kb on - strand, within CCNA_00209at 224.596 kb on + strand, within CCNA_00209at 224.642 kb on + strand, within CCNA_00209at 224.678 kb on - strand, within CCNA_00209at 224.678 kb on - strand, within CCNA_00209at 224.710 kb on + strand, within CCNA_00209at 224.718 kb on - strand, within CCNA_00209at 224.718 kb on - strand, within CCNA_00209at 224.776 kb on + strandat 224.781 kb on + strandat 224.784 kb on - strandat 224.789 kb on - strandat 224.797 kb on + strandat 224.805 kb on - strandat 224.813 kb on + strandat 224.815 kb on + strandat 224.815 kb on + strandat 224.823 kb on - strandat 224.850 kb on - strandat 224.886 kb on + strandat 224.894 kb on - strandat 224.933 kb on - strandat 224.973 kb on + strandat 225.012 kb on - strandat 225.019 kb on + strandat 225.029 kb on - strandat 225.109 kb on + strandat 225.138 kb on + strandat 225.148 kb on + strandat 225.148 kb on + strandat 225.181 kb on + strandat 225.189 kb on - strandat 225.189 kb on - strandat 225.200 kb on + strandat 225.200 kb on + strandat 225.200 kb on + strandat 225.247 kb on + strandat 225.250 kb on - strandat 225.263 kb on + strandat 225.322 kb on - strandat 225.348 kb on - strandat 225.358 kb on - strand, within CCNA_00210at 225.441 kb on + strand, within CCNA_00210at 225.453 kb on + strand, within CCNA_00210at 225.469 kb on + strand, within CCNA_00210at 225.474 kb on + strand, within CCNA_00210at 225.505 kb on + strand, within CCNA_00210at 225.518 kb on + strand, within CCNA_00210at 225.526 kb on - strand, within CCNA_00210at 225.530 kb on + strand, within CCNA_00210at 225.537 kb on + strand, within CCNA_00210at 225.546 kb on - strand, within CCNA_00210at 225.553 kb on + strand, within CCNA_00210at 225.561 kb on - strand, within CCNA_00210at 225.606 kb on - strand, within CCNA_00210at 225.646 kb on + strand, within CCNA_00210at 225.652 kb on + strand, within CCNA_00210at 225.660 kb on - strand, within CCNA_00210at 225.660 kb on - strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.693 kb on + strand, within CCNA_00210at 225.693 kb on + strand, within CCNA_00210at 225.701 kb on - strand, within CCNA_00210at 225.712 kb on + strand, within CCNA_00210at 225.716 kb on - strand, within CCNA_00210at 225.730 kb on + strand, within CCNA_00210at 225.733 kb on + strand, within CCNA_00210at 225.739 kb on + strand, within CCNA_00210at 225.750 kb on + strand, within CCNA_00210at 225.759 kb on - strand, within CCNA_00210at 225.803 kb on - strand, within CCNA_00210at 225.817 kb on - strand, within CCNA_00210at 225.820 kb on - strand, within CCNA_00210at 225.838 kb on + strand, within CCNA_00210at 225.842 kb on - strand, within CCNA_00210at 225.864 kb on - strand, within CCNA_00210at 225.901 kb on - strand, within CCNA_00210at 225.907 kb on - strand, within CCNA_00210

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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222,403 + CCNA_00208 0.12 +0.3
222,411 - CCNA_00208 0.13 +0.3
222,411 - CCNA_00208 0.13 +0.5
222,421 - CCNA_00208 0.14 -0.3
222,511 + CCNA_00208 0.23 +0.5
222,519 - CCNA_00208 0.24 -0.5
222,523 + CCNA_00208 0.24 +0.2
222,546 - CCNA_00208 0.27 -0.2
222,547 - CCNA_00208 0.27 -1.1
222,573 - CCNA_00208 0.29 -0.0
222,584 + CCNA_00208 0.30 +0.2
222,584 + CCNA_00208 0.30 +0.2
222,592 - CCNA_00208 0.31 -0.5
222,603 + CCNA_00208 0.32 +0.9
222,603 + CCNA_00208 0.32 +0.4
222,654 - CCNA_00208 0.37 +0.3
222,674 - CCNA_00208 0.39 +0.3
222,707 + CCNA_00208 0.43 +0.0
222,737 - CCNA_00208 0.46 -0.4
222,753 - CCNA_00208 0.47 -1.5
222,755 - CCNA_00208 0.48 -0.1
222,760 - CCNA_00208 0.48 +0.1
222,777 - CCNA_00208 0.50 -0.5
222,791 + CCNA_00208 0.51 +2.4
222,791 + CCNA_00208 0.51 +1.4
222,791 + CCNA_00208 0.51 +0.4
222,799 - CCNA_00208 0.52 -0.5
222,799 - CCNA_00208 0.52 +0.3
222,799 - CCNA_00208 0.52 -1.1
222,838 - CCNA_00208 0.56 -0.1
222,838 - CCNA_00208 0.56 +0.2
222,838 - CCNA_00208 0.56 -0.5
222,844 + CCNA_00208 0.57 -0.1
222,844 + CCNA_00208 0.57 -0.5
222,852 - CCNA_00208 0.57 +0.1
222,852 - CCNA_00208 0.57 -0.4
222,852 - CCNA_00208 0.57 +1.8
222,852 - CCNA_00208 0.57 -0.1
222,896 - CCNA_00208 0.62 +0.1
222,913 - CCNA_00208 0.64 -0.2
222,916 + CCNA_00208 0.64 -0.3
222,917 + CCNA_00208 0.64 +1.0
222,922 + CCNA_00208 0.65 -1.1
222,930 - CCNA_00208 0.65 +1.0
222,930 - CCNA_00208 0.65 -0.5
222,930 - CCNA_00208 0.65 -0.8
222,969 - CCNA_00208 0.69 +0.4
222,981 + CCNA_00208 0.71 -0.7
222,981 + CCNA_00208 0.71 +0.9
222,981 + CCNA_00208 0.71 +0.7
222,981 + CCNA_00208 0.71 -0.6
222,989 - CCNA_00208 0.71 -0.6
223,011 - CCNA_00208 0.74 +0.1
223,020 - CCNA_00208 0.74 -1.0
223,030 + CCNA_00208 0.75 -0.6
223,038 - CCNA_00208 0.76 -0.5
223,043 - CCNA_00208 0.77 -0.1
223,047 - CCNA_00208 0.77 +0.4
223,056 + CCNA_00208 0.78 +0.6
223,061 + CCNA_00208 0.79 -0.7
223,061 + CCNA_00208 0.79 +0.6
223,061 + CCNA_00208 0.79 +0.5
223,061 + CCNA_00208 0.79 -0.2
223,069 - CCNA_00208 0.79 -0.5
223,069 - CCNA_00208 0.79 +0.3
223,069 - CCNA_00208 0.79 +0.1
223,069 - CCNA_00208 0.79 -1.1
223,090 - CCNA_00208 0.82 +1.1
223,100 - CCNA_00208 0.83 -0.5
223,100 - CCNA_00208 0.83 -0.4
223,127 + CCNA_00208 0.85 -1.5
223,127 + CCNA_00208 0.85 -0.3
223,127 + CCNA_00208 0.85 +0.4
223,135 - CCNA_00208 0.86 -0.1
223,135 - CCNA_00208 0.86 +0.4
223,135 - CCNA_00208 0.86 -0.6
223,191 - -0.7
223,201 - -0.3
223,290 + -1.1
223,310 + -0.6
223,336 + -2.6
223,366 + +0.2
223,366 + +1.4
223,374 - -0.4
223,374 - +1.7
223,374 - +0.1
223,374 - +0.3
223,426 + -0.7
223,426 + -1.7
223,434 - -0.4
223,434 - +0.1
223,434 - -0.2
223,456 + -0.6
223,456 + -1.3
223,464 - -0.1
223,498 + +1.2
223,506 - -0.4
223,506 - -0.6
223,602 + CCNA_00209 0.16 -1.0
223,610 - CCNA_00209 0.16 -2.3
223,610 - CCNA_00209 0.16 +0.4
223,614 + CCNA_00209 0.17 +0.4
223,653 - CCNA_00209 0.19 -0.8
223,682 - CCNA_00209 0.21 +0.1
223,737 - CCNA_00209 0.24 +0.3
223,739 + CCNA_00209 0.25 -1.0
223,747 - CCNA_00209 0.25 +0.3
223,758 - CCNA_00209 0.26 -0.7
223,765 - CCNA_00209 0.26 +0.1
223,778 - CCNA_00209 0.27 +1.6
223,784 + CCNA_00209 0.27 -0.9
223,792 + CCNA_00209 0.28 +1.6
223,838 + CCNA_00209 0.31 +0.4
223,838 + CCNA_00209 0.31 -1.6
223,846 - CCNA_00209 0.31 +0.8
223,846 - CCNA_00209 0.31 +0.0
223,846 - CCNA_00209 0.31 -2.0
223,846 - CCNA_00209 0.31 +0.6
223,846 - CCNA_00209 0.31 -1.4
223,846 - CCNA_00209 0.31 +0.4
223,846 - CCNA_00209 0.31 -0.1
223,911 + CCNA_00209 0.35 -0.1
223,962 + CCNA_00209 0.39 -1.3
223,987 + CCNA_00209 0.40 +0.1
223,987 + CCNA_00209 0.40 -1.0
224,049 - CCNA_00209 0.44 +0.4
224,109 + CCNA_00209 0.48 -0.1
224,109 + CCNA_00209 0.48 +0.5
224,117 - CCNA_00209 0.49 -0.9
224,134 - CCNA_00209 0.50 -0.3
224,139 - CCNA_00209 0.50 -1.6
224,197 - CCNA_00209 0.54 +2.4
224,223 + CCNA_00209 0.55 -0.9
224,223 + CCNA_00209 0.55 -1.5
224,231 - CCNA_00209 0.56 +1.0
224,231 - CCNA_00209 0.56 -0.3
224,276 + CCNA_00209 0.59 -0.7
224,301 - CCNA_00209 0.60 -0.1
224,325 + CCNA_00209 0.62 -1.6
224,365 + CCNA_00209 0.64 -1.6
224,373 - CCNA_00209 0.65 -1.6
224,378 - CCNA_00209 0.65 +0.6
224,400 - CCNA_00209 0.66 -0.0
224,429 + CCNA_00209 0.68 -0.1
224,456 + CCNA_00209 0.70 -0.5
224,484 + CCNA_00209 0.72 -1.6
224,484 + CCNA_00209 0.72 -0.1
224,485 + CCNA_00209 0.72 -0.4
224,498 - CCNA_00209 0.73 -1.2
224,502 - CCNA_00209 0.73 +0.4
224,537 + CCNA_00209 0.75 -1.3
224,550 - CCNA_00209 0.76 -2.0
224,596 + CCNA_00209 0.79 -0.4
224,642 + CCNA_00209 0.82 -1.1
224,678 - CCNA_00209 0.84 -1.2
224,678 - CCNA_00209 0.84 +1.0
224,710 + CCNA_00209 0.86 +0.4
224,718 - CCNA_00209 0.87 +0.3
224,718 - CCNA_00209 0.87 -0.6
224,776 + -0.3
224,781 + -0.6
224,784 - -0.7
224,789 - -2.0
224,797 + +0.1
224,805 - -0.6
224,813 + -1.0
224,815 + -1.7
224,815 + -2.0
224,823 - +0.7
224,850 - +1.1
224,886 + -0.0
224,894 - +0.9
224,933 - +0.3
224,973 + -0.3
225,012 - -0.7
225,019 + -0.4
225,029 - +0.3
225,109 + +0.1
225,138 + -0.4
225,148 + +0.1
225,148 + +0.0
225,181 + +1.0
225,189 - +0.3
225,189 - -1.6
225,200 + +0.3
225,200 + -1.0
225,200 + +0.1
225,247 + +0.4
225,250 - -1.0
225,263 + +0.2
225,322 - -1.3
225,348 - +0.4
225,358 - CCNA_00210 0.10 -0.3
225,441 + CCNA_00210 0.14 +0.2
225,453 + CCNA_00210 0.14 -0.3
225,469 + CCNA_00210 0.15 +1.3
225,474 + CCNA_00210 0.15 +0.4
225,505 + CCNA_00210 0.16 -0.1
225,518 + CCNA_00210 0.17 +0.7
225,526 - CCNA_00210 0.17 -0.6
225,530 + CCNA_00210 0.17 -0.1
225,537 + CCNA_00210 0.17 +0.2
225,546 - CCNA_00210 0.18 -0.2
225,553 + CCNA_00210 0.18 +0.2
225,561 - CCNA_00210 0.18 +0.3
225,606 - CCNA_00210 0.20 +0.4
225,646 + CCNA_00210 0.22 +1.0
225,652 + CCNA_00210 0.22 +0.5
225,660 - CCNA_00210 0.23 -0.5
225,660 - CCNA_00210 0.23 +0.4
225,691 + CCNA_00210 0.24 +0.8
225,693 + CCNA_00210 0.24 +0.4
225,693 + CCNA_00210 0.24 +0.9
225,701 - CCNA_00210 0.24 +0.6
225,712 + CCNA_00210 0.25 -0.5
225,716 - CCNA_00210 0.25 +1.2
225,730 + CCNA_00210 0.25 +0.2
225,733 + CCNA_00210 0.26 +0.5
225,739 + CCNA_00210 0.26 +0.2
225,750 + CCNA_00210 0.26 +0.4
225,759 - CCNA_00210 0.27 -0.9
225,803 - CCNA_00210 0.29 +0.6
225,817 - CCNA_00210 0.29 -1.1
225,820 - CCNA_00210 0.29 -0.7
225,838 + CCNA_00210 0.30 +0.9
225,842 - CCNA_00210 0.30 -0.6
225,864 - CCNA_00210 0.31 -0.1
225,901 - CCNA_00210 0.33 -0.9
225,907 - CCNA_00210 0.33 -0.4

Or see this region's nucleotide sequence