Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00200

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00199 and CCNA_00200 are separated by 52 nucleotidesCCNA_00200 and CCNA_00201 are separated by 162 nucleotidesCCNA_00201 and CCNA_00202 are separated by 116 nucleotides CCNA_00199: CCNA_00199 - TadG/vWA-family protein, at 212,387 to 214,267 _00199 CCNA_00200: CCNA_00200 - 2OG-Fe(II) oxygenase superfamily protein, at 214,320 to 215,255 _00200 CCNA_00201: CCNA_00201 - outer membrane protein, at 215,418 to 216,098 _00201 CCNA_00202: CCNA_00202 - DesA-family fatty acid desaturase, at 216,215 to 217,270 _00202 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 213.322 kb on - strand, within CCNA_00199at 213.399 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.418 kb on + strand, within CCNA_00199at 213.427 kb on + strand, within CCNA_00199at 213.438 kb on + strand, within CCNA_00199at 213.478 kb on - strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.527 kb on - strand, within CCNA_00199at 213.529 kb on - strand, within CCNA_00199at 213.536 kb on + strand, within CCNA_00199at 213.565 kb on - strand, within CCNA_00199at 213.575 kb on + strand, within CCNA_00199at 213.577 kb on - strand, within CCNA_00199at 213.586 kb on + strand, within CCNA_00199at 213.594 kb on - strand, within CCNA_00199at 213.594 kb on - strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.640 kb on - strand, within CCNA_00199at 213.659 kb on + strand, within CCNA_00199at 213.660 kb on - strand, within CCNA_00199at 213.667 kb on - strand, within CCNA_00199at 213.667 kb on - strand, within CCNA_00199at 213.689 kb on + strand, within CCNA_00199at 213.689 kb on + strand, within CCNA_00199at 213.691 kb on + strand, within CCNA_00199at 213.711 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.762 kb on - strand, within CCNA_00199at 213.808 kb on - strand, within CCNA_00199at 213.814 kb on + strand, within CCNA_00199at 213.815 kb on + strand, within CCNA_00199at 213.819 kb on + strand, within CCNA_00199at 213.821 kb on + strand, within CCNA_00199at 213.823 kb on - strand, within CCNA_00199at 213.866 kb on + strand, within CCNA_00199at 213.879 kb on - strand, within CCNA_00199at 213.892 kb on + strand, within CCNA_00199at 213.893 kb on + strand, within CCNA_00199at 213.960 kb on - strand, within CCNA_00199at 213.968 kb on - strand, within CCNA_00199at 213.979 kb on - strand, within CCNA_00199at 213.994 kb on + strand, within CCNA_00199at 214.041 kb on + strand, within CCNA_00199at 214.041 kb on + strand, within CCNA_00199at 214.071 kb on - strand, within CCNA_00199at 214.098 kb on - strandat 214.107 kb on - strandat 214.121 kb on + strandat 214.139 kb on - strandat 214.200 kb on + strandat 214.205 kb on + strandat 214.228 kb on - strandat 214.240 kb on - strandat 214.240 kb on - strandat 214.242 kb on + strandat 214.250 kb on - strandat 214.318 kb on + strandat 214.326 kb on - strandat 214.355 kb on - strandat 214.367 kb on - strandat 214.367 kb on - strandat 214.384 kb on - strandat 214.413 kb on + strandat 214.416 kb on - strand, within CCNA_00200at 214.421 kb on - strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.463 kb on + strand, within CCNA_00200at 214.466 kb on - strand, within CCNA_00200at 214.468 kb on + strand, within CCNA_00200at 214.481 kb on - strand, within CCNA_00200at 214.481 kb on - strand, within CCNA_00200at 214.491 kb on - strand, within CCNA_00200at 214.501 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.520 kb on - strand, within CCNA_00200at 214.522 kb on + strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.623 kb on + strand, within CCNA_00200at 214.631 kb on + strand, within CCNA_00200at 214.631 kb on - strand, within CCNA_00200at 214.666 kb on - strand, within CCNA_00200at 214.698 kb on - strand, within CCNA_00200at 214.799 kb on - strand, within CCNA_00200at 214.818 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.860 kb on - strand, within CCNA_00200at 214.980 kb on + strand, within CCNA_00200at 214.988 kb on - strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.046 kb on - strand, within CCNA_00200at 215.091 kb on - strand, within CCNA_00200at 215.100 kb on + strand, within CCNA_00200at 215.100 kb on + strand, within CCNA_00200at 215.100 kb on + strand, within CCNA_00200at 215.108 kb on - strand, within CCNA_00200at 215.108 kb on - strand, within CCNA_00200at 215.127 kb on + strand, within CCNA_00200at 215.165 kb on - strandat 215.165 kb on - strandat 215.184 kb on - strandat 215.186 kb on + strandat 215.205 kb on - strandat 215.274 kb on + strandat 215.291 kb on - strandat 215.336 kb on + strandat 215.350 kb on + strandat 215.364 kb on - strandat 215.382 kb on + strandat 215.408 kb on + strandat 215.416 kb on - strandat 215.454 kb on + strandat 215.454 kb on + strandat 215.473 kb on - strandat 215.509 kb on - strand, within CCNA_00201at 215.509 kb on - strand, within CCNA_00201at 215.541 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.568 kb on + strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.576 kb on - strand, within CCNA_00201at 215.581 kb on - strand, within CCNA_00201at 215.595 kb on - strand, within CCNA_00201at 215.642 kb on - strand, within CCNA_00201at 215.677 kb on - strand, within CCNA_00201at 215.704 kb on + strand, within CCNA_00201at 215.756 kb on + strand, within CCNA_00201at 215.759 kb on - strand, within CCNA_00201at 215.764 kb on - strand, within CCNA_00201at 215.791 kb on + strand, within CCNA_00201at 215.796 kb on + strand, within CCNA_00201at 215.816 kb on - strand, within CCNA_00201at 215.816 kb on - strand, within CCNA_00201at 215.821 kb on - strand, within CCNA_00201at 215.916 kb on - strand, within CCNA_00201at 215.922 kb on + strand, within CCNA_00201at 215.922 kb on + strand, within CCNA_00201at 215.930 kb on - strand, within CCNA_00201at 215.979 kb on + strand, within CCNA_00201at 216.021 kb on - strand, within CCNA_00201at 216.035 kb on - strandat 216.043 kb on - strandat 216.054 kb on + strandat 216.062 kb on - strandat 216.087 kb on + strandat 216.087 kb on + strandat 216.092 kb on + strandat 216.094 kb on + strandat 216.143 kb on - strandat 216.168 kb on + strandat 216.187 kb on + strandat 216.195 kb on - strandat 216.197 kb on - strandat 216.207 kb on + strandat 216.210 kb on - strandat 216.234 kb on + strandat 216.253 kb on + strandat 216.255 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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213,322 - CCNA_00199 0.50 +0.6
213,399 + CCNA_00199 0.54 -0.2
213,404 + CCNA_00199 0.54 +0.1
213,404 + CCNA_00199 0.54 +0.3
213,407 - CCNA_00199 0.54 -0.5
213,407 - CCNA_00199 0.54 +0.0
213,418 + CCNA_00199 0.55 -0.2
213,427 + CCNA_00199 0.55 -0.8
213,438 + CCNA_00199 0.56 +3.0
213,478 - CCNA_00199 0.58 +0.0
213,494 + CCNA_00199 0.59 -0.4
213,494 + CCNA_00199 0.59 -0.2
213,502 - CCNA_00199 0.59 -0.0
213,502 - CCNA_00199 0.59 -0.0
213,502 - CCNA_00199 0.59 -0.8
213,502 - CCNA_00199 0.59 -1.0
213,527 - CCNA_00199 0.61 -1.1
213,529 - CCNA_00199 0.61 +0.4
213,536 + CCNA_00199 0.61 +0.4
213,565 - CCNA_00199 0.63 -0.3
213,575 + CCNA_00199 0.63 +0.2
213,577 - CCNA_00199 0.63 -0.1
213,586 + CCNA_00199 0.64 -0.1
213,594 - CCNA_00199 0.64 -1.2
213,594 - CCNA_00199 0.64 -1.0
213,631 + CCNA_00199 0.66 +0.5
213,631 + CCNA_00199 0.66 +0.5
213,631 + CCNA_00199 0.66 +0.7
213,631 + CCNA_00199 0.66 -0.6
213,631 + CCNA_00199 0.66 +0.8
213,631 + CCNA_00199 0.66 +0.3
213,631 + CCNA_00199 0.66 -0.0
213,631 + CCNA_00199 0.66 +0.1
213,631 + CCNA_00199 0.66 +0.2
213,631 + CCNA_00199 0.66 -0.3
213,639 - CCNA_00199 0.67 -2.5
213,639 - CCNA_00199 0.67 +0.4
213,639 - CCNA_00199 0.67 -0.1
213,639 - CCNA_00199 0.67 +1.7
213,639 - CCNA_00199 0.67 -2.7
213,639 - CCNA_00199 0.67 -0.4
213,639 - CCNA_00199 0.67 +0.5
213,640 - CCNA_00199 0.67 -0.4
213,659 + CCNA_00199 0.68 +0.5
213,660 - CCNA_00199 0.68 -0.3
213,667 - CCNA_00199 0.68 +0.3
213,667 - CCNA_00199 0.68 -1.4
213,689 + CCNA_00199 0.69 +0.2
213,689 + CCNA_00199 0.69 +0.6
213,691 + CCNA_00199 0.69 +0.2
213,711 + CCNA_00199 0.70 +0.5
213,733 + CCNA_00199 0.72 +1.0
213,733 + CCNA_00199 0.72 +0.6
213,733 + CCNA_00199 0.72 -0.3
213,741 - CCNA_00199 0.72 -0.1
213,762 - CCNA_00199 0.73 +0.4
213,808 - CCNA_00199 0.76 +0.2
213,814 + CCNA_00199 0.76 +0.2
213,815 + CCNA_00199 0.76 +0.2
213,819 + CCNA_00199 0.76 +0.5
213,821 + CCNA_00199 0.76 -0.4
213,823 - CCNA_00199 0.76 +0.3
213,866 + CCNA_00199 0.79 -0.8
213,879 - CCNA_00199 0.79 -0.7
213,892 + CCNA_00199 0.80 +0.1
213,893 + CCNA_00199 0.80 +0.3
213,960 - CCNA_00199 0.84 +1.3
213,968 - CCNA_00199 0.84 -0.2
213,979 - CCNA_00199 0.85 -0.0
213,994 + CCNA_00199 0.85 +0.4
214,041 + CCNA_00199 0.88 +1.1
214,041 + CCNA_00199 0.88 -0.6
214,071 - CCNA_00199 0.90 -1.0
214,098 - -0.3
214,107 - +0.5
214,121 + +0.6
214,139 - -0.1
214,200 + -0.5
214,205 + +0.4
214,228 - +0.3
214,240 - -0.5
214,240 - +0.1
214,242 + +0.2
214,250 - +0.1
214,318 + +1.1
214,326 - +0.4
214,355 - +0.2
214,367 - +0.1
214,367 - +1.9
214,384 - +0.4
214,413 + -0.3
214,416 - CCNA_00200 0.10 +0.6
214,421 - CCNA_00200 0.11 +0.5
214,423 + CCNA_00200 0.11 -1.0
214,423 + CCNA_00200 0.11 +1.1
214,423 + CCNA_00200 0.11 -0.2
214,423 + CCNA_00200 0.11 -0.2
214,463 + CCNA_00200 0.15 +0.5
214,466 - CCNA_00200 0.16 +0.2
214,468 + CCNA_00200 0.16 -0.2
214,481 - CCNA_00200 0.17 +0.3
214,481 - CCNA_00200 0.17 +0.0
214,491 - CCNA_00200 0.18 +1.0
214,501 + CCNA_00200 0.19 +0.4
214,515 + CCNA_00200 0.21 +0.0
214,520 - CCNA_00200 0.21 +0.4
214,522 + CCNA_00200 0.22 -0.3
214,523 - CCNA_00200 0.22 +1.6
214,623 + CCNA_00200 0.32 -0.4
214,631 + CCNA_00200 0.33 -0.4
214,631 - CCNA_00200 0.33 +2.4
214,666 - CCNA_00200 0.37 +0.2
214,698 - CCNA_00200 0.40 -0.2
214,799 - CCNA_00200 0.51 +0.2
214,818 + CCNA_00200 0.53 -0.2
214,851 + CCNA_00200 0.57 -0.1
214,860 - CCNA_00200 0.58 -0.2
214,980 + CCNA_00200 0.71 -0.2
214,988 - CCNA_00200 0.71 -0.3
215,037 + CCNA_00200 0.77 +1.8
215,037 + CCNA_00200 0.77 -0.0
215,037 + CCNA_00200 0.77 -0.6
215,046 - CCNA_00200 0.78 +0.1
215,091 - CCNA_00200 0.82 +0.9
215,100 + CCNA_00200 0.83 +0.1
215,100 + CCNA_00200 0.83 +0.2
215,100 + CCNA_00200 0.83 -1.6
215,108 - CCNA_00200 0.84 -0.2
215,108 - CCNA_00200 0.84 +0.3
215,127 + CCNA_00200 0.86 +1.3
215,165 - +0.7
215,165 - +0.3
215,184 - +0.0
215,186 + +0.1
215,205 - +0.4
215,274 + -0.4
215,291 - +0.4
215,336 + +1.1
215,350 + -0.3
215,364 - -0.2
215,382 + +0.3
215,408 + -0.3
215,416 - -0.9
215,454 + -0.1
215,454 + -0.6
215,473 - +0.9
215,509 - CCNA_00201 0.13 -0.5
215,509 - CCNA_00201 0.13 -0.3
215,541 + CCNA_00201 0.18 +0.3
215,568 + CCNA_00201 0.22 -0.4
215,568 + CCNA_00201 0.22 -1.1
215,568 + CCNA_00201 0.22 -0.6
215,568 + CCNA_00201 0.22 -0.3
215,568 + CCNA_00201 0.22 -0.1
215,568 + CCNA_00201 0.22 -0.2
215,568 + CCNA_00201 0.22 -1.5
215,568 + CCNA_00201 0.22 +1.1
215,568 + CCNA_00201 0.22 -1.0
215,568 + CCNA_00201 0.22 -0.0
215,576 - CCNA_00201 0.23 +0.0
215,576 - CCNA_00201 0.23 +0.0
215,576 - CCNA_00201 0.23 -0.4
215,576 - CCNA_00201 0.23 -0.6
215,576 - CCNA_00201 0.23 -0.7
215,576 - CCNA_00201 0.23 -0.1
215,581 - CCNA_00201 0.24 +0.1
215,595 - CCNA_00201 0.26 +0.1
215,642 - CCNA_00201 0.33 -0.1
215,677 - CCNA_00201 0.38 +0.7
215,704 + CCNA_00201 0.42 +0.1
215,756 + CCNA_00201 0.50 -0.3
215,759 - CCNA_00201 0.50 -1.4
215,764 - CCNA_00201 0.51 -0.1
215,791 + CCNA_00201 0.55 +0.1
215,796 + CCNA_00201 0.56 -0.6
215,816 - CCNA_00201 0.58 +1.0
215,816 - CCNA_00201 0.58 -0.2
215,821 - CCNA_00201 0.59 -1.0
215,916 - CCNA_00201 0.73 -0.9
215,922 + CCNA_00201 0.74 -0.7
215,922 + CCNA_00201 0.74 -0.1
215,930 - CCNA_00201 0.75 -0.5
215,979 + CCNA_00201 0.82 +0.4
216,021 - CCNA_00201 0.89 -1.0
216,035 - -0.5
216,043 - -0.4
216,054 + -0.1
216,062 - +0.3
216,087 + +0.6
216,087 + -0.0
216,092 + +0.1
216,094 + +0.6
216,143 - +0.5
216,168 + -0.2
216,187 + +0.1
216,195 - -0.0
216,197 - -0.1
216,207 + -0.3
216,210 - +0.2
216,234 + -0.0
216,253 + +0.9
216,255 + +0.4

Or see this region's nucleotide sequence