Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00196

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00194 and CCNA_00195 are separated by 141 nucleotidesCCNA_00195 and CCNA_00196 overlap by 4 nucleotidesCCNA_00196 and CCNA_00197 are separated by 589 nucleotidesCCNA_00197 and CCNA_00198 overlap by 4 nucleotides CCNA_00194: CCNA_00194 - Antibiotic biosynthesis monooxygenase family protein, at 208,043 to 208,345 _00194 CCNA_00195: CCNA_00195 - 3-isopropylmalate dehydratase small subunit, at 208,487 to 209,095 _00195 CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531 _00196 CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522 _00197 CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256 _00198 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1at 208.098 kb on - strand, within CCNA_00194at 208.098 kb on - strand, within CCNA_00194at 208.105 kb on - strand, within CCNA_00194at 208.188 kb on + strand, within CCNA_00194at 208.196 kb on - strand, within CCNA_00194at 208.226 kb on + strand, within CCNA_00194at 208.227 kb on + strand, within CCNA_00194at 208.231 kb on + strand, within CCNA_00194at 208.234 kb on - strand, within CCNA_00194at 208.234 kb on - strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.348 kb on - strandat 208.348 kb on - strandat 208.397 kb on + strandat 208.404 kb on + strandat 208.412 kb on - strandat 208.420 kb on + strandat 208.422 kb on + strandat 208.439 kb on - strandat 208.505 kb on - strandat 208.534 kb on + strandat 208.534 kb on + strandat 208.573 kb on + strand, within CCNA_00195at 208.634 kb on + strand, within CCNA_00195at 208.661 kb on - strand, within CCNA_00195at 208.666 kb on + strand, within CCNA_00195at 208.684 kb on - strand, within CCNA_00195at 208.700 kb on - strand, within CCNA_00195at 208.704 kb on + strand, within CCNA_00195at 208.712 kb on - strand, within CCNA_00195at 208.714 kb on + strand, within CCNA_00195at 208.723 kb on + strand, within CCNA_00195at 208.731 kb on - strand, within CCNA_00195at 208.741 kb on - strand, within CCNA_00195at 208.765 kb on - strand, within CCNA_00195at 208.772 kb on + strand, within CCNA_00195at 208.818 kb on + strand, within CCNA_00195at 208.870 kb on - strand, within CCNA_00195at 208.888 kb on + strand, within CCNA_00195at 208.896 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.904 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.918 kb on + strand, within CCNA_00195at 208.979 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.014 kb on + strand, within CCNA_00195at 209.014 kb on + strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.024 kb on + strand, within CCNA_00195at 209.024 kb on + strand, within CCNA_00195at 209.032 kb on - strand, within CCNA_00195at 209.032 kb on - strand, within CCNA_00195at 209.048 kb on - strandat 209.089 kb on - strandat 209.179 kb on - strandat 209.332 kb on + strand, within CCNA_00196at 209.367 kb on + strand, within CCNA_00196at 209.367 kb on + strand, within CCNA_00196at 209.368 kb on + strand, within CCNA_00196at 209.368 kb on + strand, within CCNA_00196at 209.382 kb on - strand, within CCNA_00196at 209.384 kb on + strand, within CCNA_00196at 209.384 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.390 kb on + strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.392 kb on - strand, within CCNA_00196at 209.397 kb on + strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.398 kb on - strand, within CCNA_00196at 209.484 kb on - strand, within CCNA_00196at 209.549 kb on - strand, within CCNA_00196at 209.558 kb on - strand, within CCNA_00196at 209.560 kb on + strand, within CCNA_00196at 209.560 kb on + strand, within CCNA_00196at 209.578 kb on + strand, within CCNA_00196at 209.578 kb on + strand, within CCNA_00196at 209.589 kb on + strand, within CCNA_00196at 209.694 kb on - strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.709 kb on - strand, within CCNA_00196at 209.751 kb on - strand, within CCNA_00196at 209.755 kb on + strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.763 kb on - strand, within CCNA_00196at 209.776 kb on - strand, within CCNA_00196at 209.788 kb on + strand, within CCNA_00196at 209.788 kb on + strand, within CCNA_00196at 209.793 kb on + strand, within CCNA_00196at 209.801 kb on - strand, within CCNA_00196at 209.801 kb on - strand, within CCNA_00196at 209.801 kb on - strand, within CCNA_00196at 209.814 kb on - strand, within CCNA_00196at 209.820 kb on - strand, within CCNA_00196at 209.841 kb on - strand, within CCNA_00196at 209.845 kb on + strand, within CCNA_00196at 209.858 kb on + strand, within CCNA_00196at 209.859 kb on + strand, within CCNA_00196at 209.866 kb on - strand, within CCNA_00196at 209.868 kb on + strand, within CCNA_00196at 209.868 kb on - strand, within CCNA_00196at 209.876 kb on - strand, within CCNA_00196at 209.900 kb on - strand, within CCNA_00196at 210.003 kb on + strand, within CCNA_00196at 210.029 kb on + strand, within CCNA_00196at 210.029 kb on + strand, within CCNA_00196at 210.040 kb on + strand, within CCNA_00196at 210.051 kb on + strand, within CCNA_00196at 210.051 kb on + strand, within CCNA_00196at 210.051 kb on + strand, within CCNA_00196at 210.052 kb on + strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.059 kb on - strand, within CCNA_00196at 210.062 kb on + strand, within CCNA_00196at 210.062 kb on + strand, within CCNA_00196at 210.100 kb on + strand, within CCNA_00196at 210.123 kb on + strand, within CCNA_00196at 210.125 kb on + strand, within CCNA_00196at 210.162 kb on - strand, within CCNA_00196at 210.175 kb on + strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.193 kb on - strand, within CCNA_00196at 210.214 kb on - strand, within CCNA_00196at 210.318 kb on + strand, within CCNA_00196at 210.319 kb on + strand, within CCNA_00196at 210.322 kb on - strand, within CCNA_00196at 210.327 kb on - strand, within CCNA_00196at 210.358 kb on - strand, within CCNA_00196at 210.369 kb on - strand, within CCNA_00196at 210.374 kb on - strand, within CCNA_00196at 210.381 kb on + strand, within CCNA_00196at 210.381 kb on + strand, within CCNA_00196at 210.412 kb on + strandat 210.414 kb on + strandat 210.420 kb on - strandat 210.429 kb on + strandat 210.437 kb on - strandat 210.442 kb on + strandat 210.455 kb on - strandat 210.460 kb on - strandat 210.505 kb on - strandat 210.505 kb on - strandat 210.505 kb on - strandat 210.640 kb on - strandat 210.662 kb on - strandat 210.709 kb on + strandat 210.717 kb on - strandat 210.717 kb on - strandat 210.748 kb on - strandat 210.838 kb on + strandat 210.849 kb on + strandat 210.854 kb on + strandat 210.859 kb on + strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.912 kb on + strandat 210.912 kb on + strandat 210.913 kb on + strandat 210.973 kb on + strandat 210.981 kb on - strandat 211.001 kb on + strandat 211.002 kb on + strandat 211.031 kb on + strandat 211.089 kb on - strandat 211.118 kb on + strandat 211.118 kb on + strandat 211.119 kb on - strandat 211.126 kb on - strandat 211.191 kb on - strand, within CCNA_00197at 211.211 kb on - strand, within CCNA_00197

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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208,098 - CCNA_00194 0.18 -1.1
208,098 - CCNA_00194 0.18 -0.1
208,105 - CCNA_00194 0.20 +0.0
208,188 + CCNA_00194 0.48 +0.0
208,196 - CCNA_00194 0.50 +0.2
208,226 + CCNA_00194 0.60 -0.7
208,227 + CCNA_00194 0.61 -1.0
208,231 + CCNA_00194 0.62 +0.4
208,234 - CCNA_00194 0.63 +0.1
208,234 - CCNA_00194 0.63 +0.4
208,260 + CCNA_00194 0.72 +0.1
208,260 + CCNA_00194 0.72 +0.7
208,260 + CCNA_00194 0.72 -0.7
208,260 + CCNA_00194 0.72 +0.1
208,260 + CCNA_00194 0.72 +0.5
208,268 - CCNA_00194 0.74 +0.9
208,268 - CCNA_00194 0.74 -0.5
208,268 - CCNA_00194 0.74 +0.1
208,268 - CCNA_00194 0.74 +0.1
208,348 - +0.1
208,348 - +0.3
208,397 + +0.9
208,404 + +0.1
208,412 - +0.4
208,420 + +0.3
208,422 + +0.0
208,439 - +0.9
208,505 - +0.1
208,534 + +1.7
208,534 + +0.2
208,573 + CCNA_00195 0.14 -0.3
208,634 + CCNA_00195 0.24 +0.4
208,661 - CCNA_00195 0.29 +0.2
208,666 + CCNA_00195 0.29 +0.7
208,684 - CCNA_00195 0.32 +1.0
208,700 - CCNA_00195 0.35 -0.1
208,704 + CCNA_00195 0.36 -0.3
208,712 - CCNA_00195 0.37 -1.0
208,714 + CCNA_00195 0.37 +0.4
208,723 + CCNA_00195 0.39 +0.3
208,731 - CCNA_00195 0.40 +0.6
208,741 - CCNA_00195 0.42 +0.1
208,765 - CCNA_00195 0.46 +0.1
208,772 + CCNA_00195 0.47 -0.5
208,818 + CCNA_00195 0.54 -0.4
208,870 - CCNA_00195 0.63 +0.5
208,888 + CCNA_00195 0.66 -0.7
208,896 + CCNA_00195 0.67 -0.3
208,898 + CCNA_00195 0.67 -1.6
208,898 + CCNA_00195 0.67 +0.4
208,898 + CCNA_00195 0.67 +0.8
208,904 - CCNA_00195 0.68 +0.3
208,906 - CCNA_00195 0.69 -0.2
208,906 - CCNA_00195 0.69 -0.6
208,906 - CCNA_00195 0.69 +0.2
208,906 - CCNA_00195 0.69 +0.1
208,906 - CCNA_00195 0.69 -0.1
208,918 + CCNA_00195 0.71 -0.9
208,979 + CCNA_00195 0.81 +0.0
209,001 + CCNA_00195 0.84 -1.2
209,001 + CCNA_00195 0.84 -0.3
209,001 + CCNA_00195 0.84 -0.1
209,001 + CCNA_00195 0.84 -0.9
209,001 + CCNA_00195 0.84 +0.5
209,001 + CCNA_00195 0.84 -0.2
209,001 + CCNA_00195 0.84 +0.1
209,001 + CCNA_00195 0.84 -1.8
209,009 - CCNA_00195 0.86 +1.0
209,009 - CCNA_00195 0.86 -0.3
209,009 - CCNA_00195 0.86 -1.3
209,014 + CCNA_00195 0.87 +0.0
209,014 + CCNA_00195 0.87 +0.0
209,022 - CCNA_00195 0.88 -0.8
209,022 - CCNA_00195 0.88 -1.1
209,022 - CCNA_00195 0.88 +0.6
209,022 - CCNA_00195 0.88 -0.1
209,022 - CCNA_00195 0.88 -1.3
209,024 + CCNA_00195 0.88 +1.0
209,024 + CCNA_00195 0.88 -0.1
209,032 - CCNA_00195 0.89 -0.7
209,032 - CCNA_00195 0.89 +1.1
209,048 - +0.4
209,089 - +0.7
209,179 - +0.9
209,332 + CCNA_00196 0.17 -0.1
209,367 + CCNA_00196 0.19 +0.3
209,367 + CCNA_00196 0.19 -0.7
209,368 + CCNA_00196 0.19 -1.0
209,368 + CCNA_00196 0.19 +0.1
209,382 - CCNA_00196 0.20 +0.0
209,384 + CCNA_00196 0.20 +0.5
209,384 + CCNA_00196 0.20 -0.7
209,390 + CCNA_00196 0.21 -0.2
209,390 + CCNA_00196 0.21 -0.3
209,392 - CCNA_00196 0.21 +0.2
209,392 - CCNA_00196 0.21 -0.7
209,397 + CCNA_00196 0.21 +0.4
209,398 - CCNA_00196 0.21 -1.6
209,398 - CCNA_00196 0.21 -0.3
209,484 - CCNA_00196 0.27 -0.1
209,549 - CCNA_00196 0.32 +0.9
209,558 - CCNA_00196 0.32 +1.5
209,560 + CCNA_00196 0.33 +0.0
209,560 + CCNA_00196 0.33 -0.6
209,578 + CCNA_00196 0.34 -1.6
209,578 + CCNA_00196 0.34 -1.1
209,589 + CCNA_00196 0.35 +0.3
209,694 - CCNA_00196 0.42 +0.0
209,709 - CCNA_00196 0.43 +0.3
209,709 - CCNA_00196 0.43 +0.2
209,751 - CCNA_00196 0.46 +0.1
209,755 + CCNA_00196 0.46 +0.3
209,763 - CCNA_00196 0.47 -0.4
209,763 - CCNA_00196 0.47 -0.1
209,776 - CCNA_00196 0.47 -0.9
209,788 + CCNA_00196 0.48 +0.1
209,788 + CCNA_00196 0.48 +0.1
209,793 + CCNA_00196 0.49 +0.7
209,801 - CCNA_00196 0.49 +0.9
209,801 - CCNA_00196 0.49 -0.6
209,801 - CCNA_00196 0.49 -0.1
209,814 - CCNA_00196 0.50 +0.1
209,820 - CCNA_00196 0.51 +0.1
209,841 - CCNA_00196 0.52 -0.0
209,845 + CCNA_00196 0.52 -0.4
209,858 + CCNA_00196 0.53 +0.0
209,859 + CCNA_00196 0.53 -0.6
209,866 - CCNA_00196 0.54 +0.9
209,868 + CCNA_00196 0.54 +1.7
209,868 - CCNA_00196 0.54 -0.1
209,876 - CCNA_00196 0.54 -0.7
209,900 - CCNA_00196 0.56 -0.7
210,003 + CCNA_00196 0.63 +0.4
210,029 + CCNA_00196 0.65 -0.4
210,029 + CCNA_00196 0.65 +0.3
210,040 + CCNA_00196 0.66 -1.3
210,051 + CCNA_00196 0.67 -0.4
210,051 + CCNA_00196 0.67 +0.3
210,051 + CCNA_00196 0.67 +0.8
210,052 + CCNA_00196 0.67 +0.1
210,059 - CCNA_00196 0.67 -0.1
210,059 - CCNA_00196 0.67 +0.3
210,059 - CCNA_00196 0.67 +0.9
210,059 - CCNA_00196 0.67 -0.7
210,062 + CCNA_00196 0.67 +0.1
210,062 + CCNA_00196 0.67 +0.7
210,100 + CCNA_00196 0.70 -0.5
210,123 + CCNA_00196 0.72 +0.3
210,125 + CCNA_00196 0.72 +0.6
210,162 - CCNA_00196 0.74 +0.2
210,175 + CCNA_00196 0.75 -0.4
210,180 + CCNA_00196 0.76 -1.0
210,180 + CCNA_00196 0.76 -0.6
210,180 + CCNA_00196 0.76 -0.1
210,193 - CCNA_00196 0.76 -1.0
210,214 - CCNA_00196 0.78 -1.5
210,318 + CCNA_00196 0.85 +0.5
210,319 + CCNA_00196 0.85 +0.4
210,322 - CCNA_00196 0.85 -0.2
210,327 - CCNA_00196 0.86 -0.6
210,358 - CCNA_00196 0.88 +0.6
210,369 - CCNA_00196 0.89 +0.4
210,374 - CCNA_00196 0.89 +0.2
210,381 + CCNA_00196 0.90 -0.1
210,381 + CCNA_00196 0.90 +1.2
210,412 + +0.2
210,414 + +0.9
210,420 - -0.4
210,429 + +0.6
210,437 - +0.4
210,442 + -0.6
210,455 - +0.3
210,460 - -0.8
210,505 - +0.4
210,505 - -0.3
210,505 - +0.1
210,640 - -0.7
210,662 - +1.1
210,709 + -0.4
210,717 - +0.5
210,717 - -0.0
210,748 - +0.2
210,838 + +0.8
210,849 + +0.5
210,854 + -0.2
210,859 + -0.5
210,867 - +0.3
210,867 - +0.8
210,867 - -0.4
210,867 - -0.1
210,912 + +0.2
210,912 + +0.4
210,913 + +0.4
210,973 + -0.0
210,981 - -0.8
211,001 + -0.1
211,002 + -0.2
211,031 + +0.0
211,089 - +0.3
211,118 + -0.7
211,118 + +0.1
211,119 - +0.3
211,126 - +0.1
211,191 - CCNA_00197 0.17 +0.0
211,211 - CCNA_00197 0.22 +0.4

Or see this region's nucleotide sequence