Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00161

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00160 and CCNA_00161 are separated by 424 nucleotidesCCNA_00161 and CCNA_00162 are separated by 71 nucleotides CCNA_00160: CCNA_00160 - methyl-accepting chemotaxis protein, at 169,387 to 170,526 _00160 CCNA_00161: CCNA_00161 - hypothetical protein, at 170,951 to 171,577 _00161 CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917 _00162 Position (kb) 170 171 172Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 169.955 kb on + strand, within CCNA_00160at 169.963 kb on - strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 170.014 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.067 kb on - strand, within CCNA_00160at 170.076 kb on - strand, within CCNA_00160at 170.110 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.133 kb on - strand, within CCNA_00160at 170.143 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.235 kb on + strand, within CCNA_00160at 170.243 kb on - strand, within CCNA_00160at 170.267 kb on + strand, within CCNA_00160at 170.268 kb on - strand, within CCNA_00160at 170.275 kb on - strand, within CCNA_00160at 170.299 kb on + strand, within CCNA_00160at 170.306 kb on - strand, within CCNA_00160at 170.308 kb on - strand, within CCNA_00160at 170.329 kb on - strand, within CCNA_00160at 170.338 kb on + strand, within CCNA_00160at 170.360 kb on + strand, within CCNA_00160at 170.360 kb on + strand, within CCNA_00160at 170.360 kb on + strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.375 kb on + strand, within CCNA_00160at 170.389 kb on + strand, within CCNA_00160at 170.397 kb on - strand, within CCNA_00160at 170.458 kb on + strandat 170.459 kb on - strandat 170.468 kb on + strandat 170.475 kb on + strandat 170.476 kb on - strandat 170.482 kb on + strandat 170.487 kb on + strandat 170.495 kb on - strandat 170.551 kb on + strandat 170.551 kb on + strandat 170.551 kb on + strandat 170.559 kb on - strandat 170.559 kb on - strandat 170.581 kb on + strandat 170.664 kb on + strandat 170.672 kb on - strandat 170.677 kb on - strandat 170.790 kb on + strandat 170.790 kb on + strandat 170.790 kb on + strandat 170.868 kb on - strandat 170.910 kb on - strandat 170.910 kb on - strandat 170.963 kb on + strandat 170.978 kb on - strandat 171.022 kb on + strand, within CCNA_00161at 171.032 kb on + strand, within CCNA_00161at 171.051 kb on - strand, within CCNA_00161at 171.179 kb on - strand, within CCNA_00161at 171.182 kb on + strand, within CCNA_00161at 171.256 kb on + strand, within CCNA_00161at 171.266 kb on + strand, within CCNA_00161at 171.299 kb on + strand, within CCNA_00161at 171.349 kb on + strand, within CCNA_00161at 171.364 kb on + strand, within CCNA_00161at 171.446 kb on - strand, within CCNA_00161at 171.525 kb on + strandat 171.525 kb on + strandat 171.705 kb on + strandat 171.721 kb on + strandat 171.783 kb on + strand, within CCNA_00162at 171.783 kb on + strand, within CCNA_00162at 171.839 kb on - strand, within CCNA_00162at 171.861 kb on + strand, within CCNA_00162at 171.887 kb on - strand, within CCNA_00162at 171.905 kb on - strand, within CCNA_00162at 171.943 kb on + strand, within CCNA_00162at 172.012 kb on + strand, within CCNA_00162at 172.017 kb on + strand, within CCNA_00162at 172.038 kb on - strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.078 kb on + strand, within CCNA_00162at 172.081 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.086 kb on - strand, within CCNA_00162at 172.111 kb on + strand, within CCNA_00162at 172.188 kb on + strand, within CCNA_00162at 172.216 kb on + strand, within CCNA_00162at 172.262 kb on + strand, within CCNA_00162at 172.281 kb on + strand, within CCNA_00162at 172.285 kb on - strand, within CCNA_00162at 172.493 kb on + strand, within CCNA_00162at 172.551 kb on + strand, within CCNA_00162

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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169,955 + CCNA_00160 0.50 +0.2
169,963 - CCNA_00160 0.51 +0.4
169,978 + CCNA_00160 0.52 -0.9
169,978 + CCNA_00160 0.52 -0.4
169,978 + CCNA_00160 0.52 +0.2
169,986 - CCNA_00160 0.53 -1.6
170,014 - CCNA_00160 0.55 +0.0
170,065 - CCNA_00160 0.59 +0.4
170,067 - CCNA_00160 0.60 +0.6
170,076 - CCNA_00160 0.60 +0.1
170,110 + CCNA_00160 0.63 +0.8
170,125 + CCNA_00160 0.65 +0.1
170,125 + CCNA_00160 0.65 -0.5
170,125 + CCNA_00160 0.65 +0.6
170,133 - CCNA_00160 0.65 -0.2
170,143 + CCNA_00160 0.66 -0.0
170,194 + CCNA_00160 0.71 +0.2
170,202 - CCNA_00160 0.71 -0.4
170,230 + CCNA_00160 0.74 +0.4
170,230 + CCNA_00160 0.74 -0.2
170,235 + CCNA_00160 0.74 -0.6
170,243 - CCNA_00160 0.75 -0.1
170,267 + CCNA_00160 0.77 +0.2
170,268 - CCNA_00160 0.77 -2.9
170,275 - CCNA_00160 0.78 -1.6
170,299 + CCNA_00160 0.80 -0.4
170,306 - CCNA_00160 0.81 -0.6
170,308 - CCNA_00160 0.81 -1.0
170,329 - CCNA_00160 0.83 +1.9
170,338 + CCNA_00160 0.83 +1.4
170,360 + CCNA_00160 0.85 -1.2
170,360 + CCNA_00160 0.85 -0.9
170,360 + CCNA_00160 0.85 -0.4
170,368 - CCNA_00160 0.86 -0.1
170,368 - CCNA_00160 0.86 -0.1
170,368 - CCNA_00160 0.86 +0.4
170,375 + CCNA_00160 0.87 -0.3
170,389 + CCNA_00160 0.88 +0.9
170,397 - CCNA_00160 0.89 -0.5
170,458 + -0.7
170,459 - +0.1
170,468 + -1.0
170,475 + -0.5
170,476 - -0.9
170,482 + -0.6
170,487 + -1.0
170,495 - -0.6
170,551 + -0.3
170,551 + +0.6
170,551 + +0.5
170,559 - -0.9
170,559 - -2.1
170,581 + +0.2
170,664 + -0.6
170,672 - +0.1
170,677 - +0.0
170,790 + +0.5
170,790 + -0.3
170,790 + +0.1
170,868 - -2.0
170,910 - -1.7
170,910 - +1.6
170,963 + -0.4
170,978 - -1.1
171,022 + CCNA_00161 0.11 +0.2
171,032 + CCNA_00161 0.13 +0.7
171,051 - CCNA_00161 0.16 -1.2
171,179 - CCNA_00161 0.36 -0.6
171,182 + CCNA_00161 0.37 +0.2
171,256 + CCNA_00161 0.49 -0.1
171,266 + CCNA_00161 0.50 -0.0
171,299 + CCNA_00161 0.56 -0.1
171,349 + CCNA_00161 0.63 +0.5
171,364 + CCNA_00161 0.66 -0.1
171,446 - CCNA_00161 0.79 -0.7
171,525 + +0.4
171,525 + +0.1
171,705 + -0.2
171,721 + -0.2
171,783 + CCNA_00162 0.11 +0.3
171,783 + CCNA_00162 0.11 -0.2
171,839 - CCNA_00162 0.15 -1.5
171,861 + CCNA_00162 0.17 -0.0
171,887 - CCNA_00162 0.19 -1.0
171,905 - CCNA_00162 0.20 -0.9
171,943 + CCNA_00162 0.23 +0.5
172,012 + CCNA_00162 0.29 -0.6
172,017 + CCNA_00162 0.29 -0.1
172,038 - CCNA_00162 0.31 -0.6
172,058 + CCNA_00162 0.32 +0.1
172,058 + CCNA_00162 0.32 -0.2
172,058 + CCNA_00162 0.32 -0.1
172,078 + CCNA_00162 0.34 +0.1
172,078 + CCNA_00162 0.34 -0.5
172,078 + CCNA_00162 0.34 +0.4
172,081 - CCNA_00162 0.34 +1.0
172,086 - CCNA_00162 0.34 +0.5
172,086 - CCNA_00162 0.34 -0.7
172,086 - CCNA_00162 0.34 -0.5
172,086 - CCNA_00162 0.34 +0.0
172,086 - CCNA_00162 0.34 +0.1
172,111 + CCNA_00162 0.36 -0.2
172,188 + CCNA_00162 0.42 +0.0
172,216 + CCNA_00162 0.45 +0.1
172,262 + CCNA_00162 0.48 -0.0
172,281 + CCNA_00162 0.50 +0.0
172,285 - CCNA_00162 0.50 -0.4
172,493 + CCNA_00162 0.67 -0.5
172,551 + CCNA_00162 0.71 +0.2

Or see this region's nucleotide sequence