Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00135

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00133 and CCNA_00134 are separated by 94 nucleotidesCCNA_00134 and CCNA_00135 are separated by 25 nucleotidesCCNA_00135 and CCNA_00136 overlap by 4 nucleotides CCNA_00133: CCNA_00133 - radical SAM family enzyme, at 142,680 to 143,894 _00133 CCNA_00134: CCNA_00134 - surface protein, at 143,989 to 144,417 _00134 CCNA_00135: CCNA_00135 - trypsin-like peptidase, at 144,443 to 145,276 _00135 CCNA_00136: CCNA_00136 - AmpG protein, at 145,273 to 146,952 _00136 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1at 143.477 kb on + strand, within CCNA_00133at 143.515 kb on + strand, within CCNA_00133at 143.515 kb on + strand, within CCNA_00133at 143.523 kb on - strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.533 kb on - strand, within CCNA_00133at 143.533 kb on - strand, within CCNA_00133at 143.533 kb on - strand, within CCNA_00133at 143.561 kb on + strand, within CCNA_00133at 143.569 kb on - strand, within CCNA_00133at 143.569 kb on - strand, within CCNA_00133at 143.589 kb on - strand, within CCNA_00133at 143.589 kb on - strand, within CCNA_00133at 143.612 kb on + strand, within CCNA_00133at 143.620 kb on - strand, within CCNA_00133at 143.620 kb on - strand, within CCNA_00133at 143.638 kb on + strand, within CCNA_00133at 143.640 kb on - strand, within CCNA_00133at 143.641 kb on - strand, within CCNA_00133at 143.662 kb on - strand, within CCNA_00133at 143.696 kb on + strand, within CCNA_00133at 143.696 kb on + strand, within CCNA_00133at 143.737 kb on - strand, within CCNA_00133at 143.744 kb on + strand, within CCNA_00133at 143.754 kb on - strand, within CCNA_00133at 143.763 kb on + strand, within CCNA_00133at 143.769 kb on - strand, within CCNA_00133at 143.795 kb on - strandat 143.797 kb on - strandat 143.797 kb on - strandat 143.803 kb on + strandat 143.831 kb on - strandat 143.831 kb on - strandat 143.831 kb on - strandat 143.831 kb on - strandat 143.872 kb on - strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.897 kb on - strandat 143.897 kb on - strandat 143.897 kb on - strandat 143.913 kb on + strandat 143.925 kb on + strandat 143.925 kb on + strandat 143.933 kb on - strandat 143.933 kb on - strandat 143.934 kb on + strandat 143.942 kb on - strandat 143.944 kb on + strandat 143.944 kb on + strandat 143.949 kb on + strandat 143.973 kb on + strandat 143.981 kb on - strandat 144.015 kb on + strandat 144.016 kb on + strandat 144.016 kb on + strandat 144.016 kb on + strandat 144.016 kb on - strandat 144.064 kb on - strand, within CCNA_00134at 144.096 kb on + strand, within CCNA_00134at 144.096 kb on + strand, within CCNA_00134at 144.101 kb on + strand, within CCNA_00134at 144.104 kb on - strand, within CCNA_00134at 144.106 kb on + strand, within CCNA_00134at 144.171 kb on + strand, within CCNA_00134at 144.178 kb on + strand, within CCNA_00134at 144.188 kb on - strand, within CCNA_00134at 144.271 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.313 kb on + strand, within CCNA_00134at 144.314 kb on - strand, within CCNA_00134at 144.314 kb on - strand, within CCNA_00134at 144.314 kb on - strand, within CCNA_00134at 144.366 kb on - strand, within CCNA_00134at 144.480 kb on - strandat 144.480 kb on - strandat 144.758 kb on + strand, within CCNA_00135at 144.763 kb on + strand, within CCNA_00135at 144.771 kb on - strand, within CCNA_00135at 144.771 kb on - strand, within CCNA_00135at 144.833 kb on + strand, within CCNA_00135at 144.850 kb on + strand, within CCNA_00135at 144.938 kb on + strand, within CCNA_00135at 144.958 kb on - strand, within CCNA_00135at 144.971 kb on + strand, within CCNA_00135at 144.976 kb on + strand, within CCNA_00135at 144.979 kb on - strand, within CCNA_00135at 144.979 kb on - strand, within CCNA_00135at 144.981 kb on + strand, within CCNA_00135at 144.989 kb on - strand, within CCNA_00135at 144.997 kb on + strand, within CCNA_00135at 144.999 kb on - strand, within CCNA_00135at 145.058 kb on + strand, within CCNA_00135at 145.079 kb on - strand, within CCNA_00135at 145.105 kb on + strand, within CCNA_00135at 145.129 kb on + strand, within CCNA_00135at 145.129 kb on + strand, within CCNA_00135at 145.271 kb on + strandat 145.288 kb on + strandat 145.321 kb on - strandat 145.326 kb on - strandat 145.342 kb on + strandat 145.347 kb on + strandat 145.350 kb on - strandat 145.363 kb on - strandat 145.378 kb on - strandat 145.378 kb on - strandat 145.378 kb on - strandat 145.378 kb on - strandat 145.378 kb on - strandat 145.378 kb on - strandat 145.382 kb on + strandat 145.394 kb on - strandat 145.409 kb on - strandat 145.455 kb on - strand, within CCNA_00136at 145.465 kb on - strand, within CCNA_00136at 145.465 kb on - strand, within CCNA_00136at 145.465 kb on - strand, within CCNA_00136at 145.493 kb on + strand, within CCNA_00136at 145.501 kb on - strand, within CCNA_00136at 145.506 kb on + strand, within CCNA_00136at 145.567 kb on + strand, within CCNA_00136at 145.570 kb on - strand, within CCNA_00136at 145.570 kb on - strand, within CCNA_00136at 145.587 kb on - strand, within CCNA_00136at 145.594 kb on - strand, within CCNA_00136at 145.594 kb on - strand, within CCNA_00136at 145.603 kb on + strand, within CCNA_00136at 145.608 kb on + strand, within CCNA_00136at 145.608 kb on + strand, within CCNA_00136at 145.611 kb on - strand, within CCNA_00136at 145.616 kb on - strand, within CCNA_00136at 145.632 kb on - strand, within CCNA_00136at 145.632 kb on - strand, within CCNA_00136at 145.632 kb on - strand, within CCNA_00136at 145.642 kb on - strand, within CCNA_00136at 145.731 kb on - strand, within CCNA_00136at 145.766 kb on + strand, within CCNA_00136at 145.771 kb on + strand, within CCNA_00136at 145.774 kb on - strand, within CCNA_00136at 145.774 kb on - strand, within CCNA_00136at 145.774 kb on - strand, within CCNA_00136at 145.783 kb on - strand, within CCNA_00136at 145.802 kb on + strand, within CCNA_00136at 145.834 kb on + strand, within CCNA_00136at 145.842 kb on - strand, within CCNA_00136at 145.869 kb on + strand, within CCNA_00136at 145.869 kb on + strand, within CCNA_00136at 145.877 kb on - strand, within CCNA_00136at 145.877 kb on - strand, within CCNA_00136at 146.051 kb on - strand, within CCNA_00136at 146.077 kb on + strand, within CCNA_00136at 146.106 kb on - strand, within CCNA_00136at 146.132 kb on + strand, within CCNA_00136at 146.132 kb on + strand, within CCNA_00136at 146.132 kb on + strand, within CCNA_00136at 146.140 kb on - strand, within CCNA_00136at 146.143 kb on + strand, within CCNA_00136at 146.151 kb on - strand, within CCNA_00136at 146.165 kb on + strand, within CCNA_00136at 146.173 kb on - strand, within CCNA_00136at 146.178 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.204 kb on - strand, within CCNA_00136at 146.204 kb on - strand, within CCNA_00136

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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143,477 + CCNA_00133 0.66 +0.8
143,515 + CCNA_00133 0.69 -0.2
143,515 + CCNA_00133 0.69 +0.9
143,523 - CCNA_00133 0.69 -0.6
143,525 + CCNA_00133 0.70 +0.2
143,525 + CCNA_00133 0.70 +0.4
143,525 + CCNA_00133 0.70 -0.6
143,525 + CCNA_00133 0.70 +0.0
143,525 + CCNA_00133 0.70 +0.0
143,533 - CCNA_00133 0.70 -0.3
143,533 - CCNA_00133 0.70 -1.0
143,533 - CCNA_00133 0.70 +0.7
143,561 + CCNA_00133 0.73 +0.2
143,569 - CCNA_00133 0.73 +0.0
143,569 - CCNA_00133 0.73 +0.4
143,589 - CCNA_00133 0.75 -0.4
143,589 - CCNA_00133 0.75 -1.2
143,612 + CCNA_00133 0.77 +0.5
143,620 - CCNA_00133 0.77 -1.3
143,620 - CCNA_00133 0.77 -1.3
143,638 + CCNA_00133 0.79 -0.0
143,640 - CCNA_00133 0.79 -0.3
143,641 - CCNA_00133 0.79 +0.2
143,662 - CCNA_00133 0.81 -0.6
143,696 + CCNA_00133 0.84 +0.2
143,696 + CCNA_00133 0.84 +0.6
143,737 - CCNA_00133 0.87 -1.5
143,744 + CCNA_00133 0.88 -0.2
143,754 - CCNA_00133 0.88 -0.5
143,763 + CCNA_00133 0.89 +1.3
143,769 - CCNA_00133 0.90 -1.5
143,795 - -0.5
143,797 - -0.5
143,797 - +0.3
143,803 + -0.1
143,831 - -0.2
143,831 - +0.0
143,831 - +0.0
143,831 - -2.0
143,872 - -1.2
143,889 + -0.4
143,889 + +0.3
143,889 + +0.2
143,889 + +0.9
143,897 - -0.1
143,897 - -1.1
143,897 - -0.1
143,913 + -0.6
143,925 + +1.0
143,925 + -0.7
143,933 - -0.6
143,933 - -1.0
143,934 + -2.2
143,942 - -1.3
143,944 + -0.1
143,944 + -0.1
143,949 + -0.3
143,973 + -0.0
143,981 - -2.7
144,015 + -3.0
144,016 + -0.6
144,016 + -0.9
144,016 + -0.6
144,016 - -1.2
144,064 - CCNA_00134 0.17 -2.6
144,096 + CCNA_00134 0.25 -1.7
144,096 + CCNA_00134 0.25 -1.1
144,101 + CCNA_00134 0.26 -1.1
144,104 - CCNA_00134 0.27 +1.1
144,106 + CCNA_00134 0.27 -1.7
144,171 + CCNA_00134 0.42 +0.7
144,178 + CCNA_00134 0.44 -2.6
144,188 - CCNA_00134 0.46 -2.1
144,271 + CCNA_00134 0.66 -1.3
144,306 + CCNA_00134 0.74 -0.9
144,306 + CCNA_00134 0.74 -1.7
144,306 + CCNA_00134 0.74 -0.1
144,306 + CCNA_00134 0.74 -1.0
144,313 + CCNA_00134 0.76 -1.0
144,314 - CCNA_00134 0.76 -1.7
144,314 - CCNA_00134 0.76 -0.4
144,314 - CCNA_00134 0.76 -0.2
144,366 - CCNA_00134 0.88 -1.0
144,480 - -0.6
144,480 - -1.2
144,758 + CCNA_00135 0.38 -1.5
144,763 + CCNA_00135 0.38 -1.9
144,771 - CCNA_00135 0.39 -0.2
144,771 - CCNA_00135 0.39 -2.3
144,833 + CCNA_00135 0.47 -3.0
144,850 + CCNA_00135 0.49 -2.4
144,938 + CCNA_00135 0.59 -0.7
144,958 - CCNA_00135 0.62 -0.4
144,971 + CCNA_00135 0.63 -1.1
144,976 + CCNA_00135 0.64 +0.7
144,979 - CCNA_00135 0.64 +0.8
144,979 - CCNA_00135 0.64 -0.6
144,981 + CCNA_00135 0.65 +0.8
144,989 - CCNA_00135 0.65 -2.1
144,997 + CCNA_00135 0.66 -2.4
144,999 - CCNA_00135 0.67 -1.7
145,058 + CCNA_00135 0.74 -0.5
145,079 - CCNA_00135 0.76 +0.4
145,105 + CCNA_00135 0.79 -2.1
145,129 + CCNA_00135 0.82 -2.9
145,129 + CCNA_00135 0.82 +0.1
145,271 + -0.3
145,288 + +0.2
145,321 - -0.7
145,326 - -0.9
145,342 + -0.5
145,347 + -0.4
145,350 - -1.2
145,363 - -0.2
145,378 - -0.4
145,378 - -0.2
145,378 - -0.1
145,378 - +0.5
145,378 - -0.7
145,378 - -0.2
145,382 + +0.2
145,394 - +0.5
145,409 - -0.9
145,455 - CCNA_00136 0.11 +0.8
145,465 - CCNA_00136 0.11 -0.2
145,465 - CCNA_00136 0.11 +0.2
145,465 - CCNA_00136 0.11 +1.0
145,493 + CCNA_00136 0.13 -0.2
145,501 - CCNA_00136 0.14 -0.1
145,506 + CCNA_00136 0.14 -0.2
145,567 + CCNA_00136 0.17 -0.7
145,570 - CCNA_00136 0.18 -0.1
145,570 - CCNA_00136 0.18 +0.8
145,587 - CCNA_00136 0.19 +0.5
145,594 - CCNA_00136 0.19 +0.3
145,594 - CCNA_00136 0.19 -0.3
145,603 + CCNA_00136 0.20 -1.0
145,608 + CCNA_00136 0.20 -0.2
145,608 + CCNA_00136 0.20 +0.2
145,611 - CCNA_00136 0.20 +0.6
145,616 - CCNA_00136 0.20 +0.2
145,632 - CCNA_00136 0.21 -0.2
145,632 - CCNA_00136 0.21 +0.4
145,632 - CCNA_00136 0.21 +0.1
145,642 - CCNA_00136 0.22 -0.4
145,731 - CCNA_00136 0.27 -0.1
145,766 + CCNA_00136 0.29 +0.5
145,771 + CCNA_00136 0.30 -0.4
145,774 - CCNA_00136 0.30 -0.7
145,774 - CCNA_00136 0.30 +0.3
145,774 - CCNA_00136 0.30 -1.4
145,783 - CCNA_00136 0.30 +0.2
145,802 + CCNA_00136 0.31 -0.5
145,834 + CCNA_00136 0.33 +0.2
145,842 - CCNA_00136 0.34 -0.2
145,869 + CCNA_00136 0.35 -0.7
145,869 + CCNA_00136 0.35 +0.6
145,877 - CCNA_00136 0.36 +0.0
145,877 - CCNA_00136 0.36 -0.3
146,051 - CCNA_00136 0.46 +0.1
146,077 + CCNA_00136 0.48 -0.4
146,106 - CCNA_00136 0.50 +0.6
146,132 + CCNA_00136 0.51 +0.2
146,132 + CCNA_00136 0.51 +0.3
146,132 + CCNA_00136 0.51 +0.4
146,140 - CCNA_00136 0.52 +0.1
146,143 + CCNA_00136 0.52 +0.4
146,151 - CCNA_00136 0.52 +0.1
146,165 + CCNA_00136 0.53 -0.2
146,173 - CCNA_00136 0.54 +0.0
146,178 + CCNA_00136 0.54 +1.3
146,196 + CCNA_00136 0.55 +0.8
146,196 + CCNA_00136 0.55 +0.1
146,196 + CCNA_00136 0.55 -0.9
146,196 + CCNA_00136 0.55 +1.3
146,204 - CCNA_00136 0.55 -0.8
146,204 - CCNA_00136 0.55 +0.2

Or see this region's nucleotide sequence