Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00050

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00048 and CCNA_00049 are separated by 119 nucleotidesCCNA_00049 and CCNA_00050 are separated by 27 nucleotidesCCNA_00050 and CCNA_00051 overlap by 4 nucleotidesCCNA_00051 and CCNA_00052 are separated by 8 nucleotides CCNA_00048: CCNA_00048 - S-adenosylmethionine synthetase, at 50,902 to 52,125 _00048 CCNA_00049: CCNA_00049 - HTH transcriptional regulator, at 52,245 to 52,679 _00049 CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299 _00050 CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222 _00051 CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686 _00052 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 52.230 kb on - strandat 52.251 kb on - strandat 52.258 kb on - strandat 52.324 kb on + strand, within CCNA_00049at 52.331 kb on + strand, within CCNA_00049at 52.331 kb on + strand, within CCNA_00049at 52.331 kb on + strand, within CCNA_00049at 52.393 kb on + strand, within CCNA_00049at 52.393 kb on + strand, within CCNA_00049at 52.430 kb on + strand, within CCNA_00049at 52.430 kb on + strand, within CCNA_00049at 52.430 kb on + strand, within CCNA_00049at 52.438 kb on - strand, within CCNA_00049at 52.469 kb on + strand, within CCNA_00049at 52.554 kb on - strand, within CCNA_00049at 52.577 kb on + strand, within CCNA_00049at 52.636 kb on + strandat 52.636 kb on + strandat 52.644 kb on - strandat 52.753 kb on + strandat 52.775 kb on + strandat 53.088 kb on - strand, within CCNA_00050at 53.637 kb on - strand, within CCNA_00050at 53.958 kb on - strand, within CCNA_00050at 54.262 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.270 kb on - strandat 54.309 kb on + strandat 54.329 kb on - strandat 54.479 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.534 kb on - strand, within CCNA_00051at 54.534 kb on - strand, within CCNA_00051at 54.541 kb on - strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.561 kb on - strand, within CCNA_00051at 54.564 kb on + strand, within CCNA_00051at 54.631 kb on - strand, within CCNA_00051at 54.634 kb on - strand, within CCNA_00051at 54.667 kb on + strand, within CCNA_00051at 54.721 kb on - strand, within CCNA_00051at 54.757 kb on - strand, within CCNA_00051at 54.757 kb on - strand, within CCNA_00051at 54.774 kb on - strand, within CCNA_00051at 54.784 kb on + strand, within CCNA_00051at 54.793 kb on - strand, within CCNA_00051at 54.795 kb on + strand, within CCNA_00051at 54.814 kb on + strand, within CCNA_00051at 54.870 kb on + strand, within CCNA_00051at 54.878 kb on - strand, within CCNA_00051at 54.907 kb on - strand, within CCNA_00051at 55.011 kb on + strand, within CCNA_00051at 55.084 kb on - strand, within CCNA_00051at 55.196 kb on + strandat 55.208 kb on - strandat 55.219 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.260 kb on - strandat 55.261 kb on - strandat 55.270 kb on + strandat 55.278 kb on - strand, within CCNA_00052

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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52,230 - +0.6
52,251 - +1.2
52,258 - +0.0
52,324 + CCNA_00049 0.18 -1.5
52,331 + CCNA_00049 0.20 -0.6
52,331 + CCNA_00049 0.20 +0.3
52,331 + CCNA_00049 0.20 -0.1
52,393 + CCNA_00049 0.34 +0.4
52,393 + CCNA_00049 0.34 -1.4
52,430 + CCNA_00049 0.43 -0.8
52,430 + CCNA_00049 0.43 +0.3
52,430 + CCNA_00049 0.43 +0.9
52,438 - CCNA_00049 0.44 +0.2
52,469 + CCNA_00049 0.51 +1.4
52,554 - CCNA_00049 0.71 -0.7
52,577 + CCNA_00049 0.76 +0.4
52,636 + -0.4
52,636 + +0.1
52,644 - -0.0
52,753 + -3.3
52,775 + -0.4
53,088 - CCNA_00050 0.24 +0.1
53,637 - CCNA_00050 0.58 +1.3
53,958 - CCNA_00050 0.79 +0.4
54,262 + -0.6
54,262 + -0.7
54,262 + -0.2
54,262 + -0.7
54,270 - +0.1
54,309 + -0.7
54,329 - +0.0
54,479 - CCNA_00051 0.20 +0.0
54,502 - CCNA_00051 0.22 +0.2
54,534 - CCNA_00051 0.26 +2.2
54,534 - CCNA_00051 0.26 -1.4
54,541 - CCNA_00051 0.26 +0.9
54,551 - CCNA_00051 0.28 +0.6
54,551 - CCNA_00051 0.28 -0.2
54,561 - CCNA_00051 0.29 +0.2
54,564 + CCNA_00051 0.29 +0.8
54,631 - CCNA_00051 0.36 -1.4
54,634 - CCNA_00051 0.36 +0.4
54,667 + CCNA_00051 0.40 -0.6
54,721 - CCNA_00051 0.46 -0.2
54,757 - CCNA_00051 0.50 +0.2
54,757 - CCNA_00051 0.50 +1.8
54,774 - CCNA_00051 0.52 -0.3
54,784 + CCNA_00051 0.53 -0.0
54,793 - CCNA_00051 0.54 -0.5
54,795 + CCNA_00051 0.54 +0.1
54,814 + CCNA_00051 0.56 +0.4
54,870 + CCNA_00051 0.62 +0.3
54,878 - CCNA_00051 0.63 +0.1
54,907 - CCNA_00051 0.66 +0.1
55,011 + CCNA_00051 0.77 -1.2
55,084 - CCNA_00051 0.85 +0.2
55,196 + -0.6
55,208 - +0.4
55,219 + +0.9
55,224 + -0.4
55,224 + +0.5
55,224 + +0.4
55,224 + -1.5
55,224 + -0.7
55,232 - +1.4
55,232 - +0.3
55,232 - +0.2
55,232 - -0.2
55,232 - -0.2
55,260 - +0.2
55,261 - -1.0
55,270 + -0.5
55,278 - CCNA_00052 0.10 -2.0

Or see this region's nucleotide sequence