Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20520

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20510 and ABIE41_RS20515 are separated by 4 nucleotidesABIE41_RS20515 and ABIE41_RS20520 are separated by 102 nucleotidesABIE41_RS20520 and ABIE41_RS20525 are separated by 15 nucleotides ABIE41_RS20510: ABIE41_RS20510 - sugar ABC transporter permease, at 4,216,747 to 4,217,637 _RS20510 ABIE41_RS20515: ABIE41_RS20515 - ABC transporter permease subunit, at 4,217,642 to 4,218,475 _RS20515 ABIE41_RS20520: ABIE41_RS20520 - extracellular solute-binding protein, at 4,218,578 to 4,219,768 _RS20520 ABIE41_RS20525: ABIE41_RS20525 - Gfo/Idh/MocA family oxidoreductase, at 4,219,784 to 4,220,809 _RS20525 Position (kb) 4218 4219 4220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4217.605 kb on + strandat 4217.606 kb on - strandat 4217.606 kb on - strandat 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.811 kb on - strand, within ABIE41_RS20515at 4217.813 kb on + strand, within ABIE41_RS20515at 4217.814 kb on - strand, within ABIE41_RS20515at 4217.814 kb on - strand, within ABIE41_RS20515at 4217.814 kb on - strand, within ABIE41_RS20515at 4217.847 kb on + strand, within ABIE41_RS20515at 4217.848 kb on - strand, within ABIE41_RS20515at 4217.918 kb on + strand, within ABIE41_RS20515at 4217.919 kb on - strand, within ABIE41_RS20515at 4217.919 kb on - strand, within ABIE41_RS20515at 4218.002 kb on + strand, within ABIE41_RS20515at 4218.002 kb on + strand, within ABIE41_RS20515at 4218.029 kb on + strand, within ABIE41_RS20515at 4218.029 kb on + strand, within ABIE41_RS20515at 4218.030 kb on - strand, within ABIE41_RS20515at 4218.030 kb on - strand, within ABIE41_RS20515at 4218.190 kb on + strand, within ABIE41_RS20515at 4218.326 kb on + strand, within ABIE41_RS20515at 4218.327 kb on - strand, within ABIE41_RS20515at 4218.327 kb on - strand, within ABIE41_RS20515at 4218.330 kb on - strand, within ABIE41_RS20515at 4218.330 kb on - strand, within ABIE41_RS20515at 4218.389 kb on + strand, within ABIE41_RS20515at 4218.389 kb on + strand, within ABIE41_RS20515at 4218.389 kb on + strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.550 kb on + strandat 4218.550 kb on + strandat 4218.965 kb on + strand, within ABIE41_RS20520at 4218.965 kb on + strand, within ABIE41_RS20520at 4218.965 kb on + strand, within ABIE41_RS20520at 4218.965 kb on + strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4218.966 kb on - strand, within ABIE41_RS20520at 4219.028 kb on + strand, within ABIE41_RS20520at 4219.029 kb on - strand, within ABIE41_RS20520at 4219.029 kb on - strand, within ABIE41_RS20520at 4219.029 kb on - strand, within ABIE41_RS20520at 4219.055 kb on + strand, within ABIE41_RS20520at 4219.055 kb on + strand, within ABIE41_RS20520at 4219.139 kb on + strand, within ABIE41_RS20520at 4219.140 kb on - strand, within ABIE41_RS20520at 4219.193 kb on + strand, within ABIE41_RS20520at 4219.193 kb on + strand, within ABIE41_RS20520at 4219.193 kb on + strand, within ABIE41_RS20520at 4219.194 kb on - strand, within ABIE41_RS20520at 4219.194 kb on - strand, within ABIE41_RS20520at 4219.283 kb on + strand, within ABIE41_RS20520at 4219.283 kb on + strand, within ABIE41_RS20520at 4219.283 kb on + strand, within ABIE41_RS20520at 4219.284 kb on - strand, within ABIE41_RS20520at 4219.284 kb on - strand, within ABIE41_RS20520at 4219.547 kb on + strand, within ABIE41_RS20520at 4219.548 kb on - strand, within ABIE41_RS20520at 4219.548 kb on - strand, within ABIE41_RS20520at 4219.559 kb on + strand, within ABIE41_RS20520at 4219.559 kb on + strand, within ABIE41_RS20520at 4219.627 kb on - strand, within ABIE41_RS20520at 4219.767 kb on - strandat 4219.838 kb on - strandat 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.294 kb on + strand, within ABIE41_RS20525at 4220.295 kb on - strand, within ABIE41_RS20525at 4220.468 kb on + strand, within ABIE41_RS20525at 4220.469 kb on - strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.567 kb on + strand, within ABIE41_RS20525at 4220.568 kb on - strand, within ABIE41_RS20525at 4220.568 kb on - strand, within ABIE41_RS20525at 4220.568 kb on - strand, within ABIE41_RS20525at 4220.636 kb on - strand, within ABIE41_RS20525at 4220.663 kb on + strand, within ABIE41_RS20525at 4220.663 kb on + strand, within ABIE41_RS20525at 4220.663 kb on + strand, within ABIE41_RS20525

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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4,217,605 + +0.2
4,217,606 - +1.4
4,217,606 - +0.4
4,217,810 + ABIE41_RS20515 0.20 +1.8
4,217,810 + ABIE41_RS20515 0.20 -0.7
4,217,810 + ABIE41_RS20515 0.20 +0.2
4,217,810 + ABIE41_RS20515 0.20 +0.8
4,217,810 + ABIE41_RS20515 0.20 -1.5
4,217,810 + ABIE41_RS20515 0.20 +0.1
4,217,811 - ABIE41_RS20515 0.20 -0.9
4,217,813 + ABIE41_RS20515 0.21 +0.1
4,217,814 - ABIE41_RS20515 0.21 -0.6
4,217,814 - ABIE41_RS20515 0.21 +1.7
4,217,814 - ABIE41_RS20515 0.21 -0.9
4,217,847 + ABIE41_RS20515 0.25 -0.6
4,217,848 - ABIE41_RS20515 0.25 +0.1
4,217,918 + ABIE41_RS20515 0.33 -0.7
4,217,919 - ABIE41_RS20515 0.33 -1.2
4,217,919 - ABIE41_RS20515 0.33 -1.2
4,218,002 + ABIE41_RS20515 0.43 +1.3
4,218,002 + ABIE41_RS20515 0.43 -0.5
4,218,029 + ABIE41_RS20515 0.46 -0.2
4,218,029 + ABIE41_RS20515 0.46 +0.9
4,218,030 - ABIE41_RS20515 0.47 -0.0
4,218,030 - ABIE41_RS20515 0.47 -0.6
4,218,190 + ABIE41_RS20515 0.66 -0.6
4,218,326 + ABIE41_RS20515 0.82 -1.1
4,218,327 - ABIE41_RS20515 0.82 -0.9
4,218,327 - ABIE41_RS20515 0.82 -0.3
4,218,330 - ABIE41_RS20515 0.82 +0.7
4,218,330 - ABIE41_RS20515 0.82 +0.2
4,218,389 + ABIE41_RS20515 0.90 -0.9
4,218,389 + ABIE41_RS20515 0.90 -0.5
4,218,389 + ABIE41_RS20515 0.90 +0.5
4,218,390 - ABIE41_RS20515 0.90 -0.7
4,218,390 - ABIE41_RS20515 0.90 -1.5
4,218,390 - ABIE41_RS20515 0.90 -0.8
4,218,390 - ABIE41_RS20515 0.90 -0.4
4,218,390 - ABIE41_RS20515 0.90 -0.6
4,218,550 + -0.3
4,218,550 + -0.2
4,218,965 + ABIE41_RS20520 0.32 +1.7
4,218,965 + ABIE41_RS20520 0.32 -2.0
4,218,965 + ABIE41_RS20520 0.32 -1.2
4,218,965 + ABIE41_RS20520 0.32 -0.7
4,218,966 - ABIE41_RS20520 0.33 +0.1
4,218,966 - ABIE41_RS20520 0.33 +1.7
4,218,966 - ABIE41_RS20520 0.33 +0.0
4,218,966 - ABIE41_RS20520 0.33 -0.2
4,218,966 - ABIE41_RS20520 0.33 +0.4
4,218,966 - ABIE41_RS20520 0.33 -0.5
4,218,966 - ABIE41_RS20520 0.33 +0.2
4,219,028 + ABIE41_RS20520 0.38 -0.3
4,219,029 - ABIE41_RS20520 0.38 +0.5
4,219,029 - ABIE41_RS20520 0.38 -2.9
4,219,029 - ABIE41_RS20520 0.38 -0.2
4,219,055 + ABIE41_RS20520 0.40 +1.9
4,219,055 + ABIE41_RS20520 0.40 -1.9
4,219,139 + ABIE41_RS20520 0.47 -0.6
4,219,140 - ABIE41_RS20520 0.47 -1.9
4,219,193 + ABIE41_RS20520 0.52 -0.8
4,219,193 + ABIE41_RS20520 0.52 +0.2
4,219,193 + ABIE41_RS20520 0.52 +2.2
4,219,194 - ABIE41_RS20520 0.52 -0.1
4,219,194 - ABIE41_RS20520 0.52 -0.3
4,219,283 + ABIE41_RS20520 0.59 -0.3
4,219,283 + ABIE41_RS20520 0.59 -0.4
4,219,283 + ABIE41_RS20520 0.59 -0.4
4,219,284 - ABIE41_RS20520 0.59 -0.1
4,219,284 - ABIE41_RS20520 0.59 -0.4
4,219,547 + ABIE41_RS20520 0.81 -1.7
4,219,548 - ABIE41_RS20520 0.81 +1.4
4,219,548 - ABIE41_RS20520 0.81 -0.1
4,219,559 + ABIE41_RS20520 0.82 +0.1
4,219,559 + ABIE41_RS20520 0.82 -0.8
4,219,627 - ABIE41_RS20520 0.88 -0.2
4,219,767 - -0.0
4,219,838 - +0.1
4,220,294 + ABIE41_RS20525 0.50 -0.4
4,220,294 + ABIE41_RS20525 0.50 -0.3
4,220,294 + ABIE41_RS20525 0.50 -1.1
4,220,294 + ABIE41_RS20525 0.50 +1.0
4,220,294 + ABIE41_RS20525 0.50 -0.6
4,220,295 - ABIE41_RS20525 0.50 -0.8
4,220,468 + ABIE41_RS20525 0.67 +1.8
4,220,469 - ABIE41_RS20525 0.67 -0.7
4,220,567 + ABIE41_RS20525 0.76 -1.3
4,220,567 + ABIE41_RS20525 0.76 -0.1
4,220,567 + ABIE41_RS20525 0.76 +0.0
4,220,567 + ABIE41_RS20525 0.76 +0.0
4,220,568 - ABIE41_RS20525 0.76 -1.2
4,220,568 - ABIE41_RS20525 0.76 +0.2
4,220,568 - ABIE41_RS20525 0.76 +0.6
4,220,636 - ABIE41_RS20525 0.83 -0.5
4,220,663 + ABIE41_RS20525 0.86 -1.1
4,220,663 + ABIE41_RS20525 0.86 -0.5
4,220,663 + ABIE41_RS20525 0.86 -0.3

Or see this region's nucleotide sequence