Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15200 and ABIE41_RS15205 are separated by 31 nucleotides ABIE41_RS15205 and ABIE41_RS15210 are separated by 177 nucleotides ABIE41_RS15210 and ABIE41_RS15215 are separated by 219 nucleotides
ABIE41_RS15200: ABIE41_RS15200 - hypothetical protein, at 3,110,324 to 3,110,947
_RS15200
ABIE41_RS15205: ABIE41_RS15205 - RlmE family RNA methyltransferase, at 3,110,979 to 3,111,659
_RS15205
ABIE41_RS15210: ABIE41_RS15210 - Ppx/GppA phosphatase family protein, at 3,111,837 to 3,113,042
_RS15210
ABIE41_RS15215: ABIE41_RS15215 - glycerol kinase GlpK, at 3,113,262 to 3,114,779
_RS15215
Position (kb)
3111
3112
3113
3114 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3110.900 kb on + strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3112.028 kb on - strand, within ABIE41_RS15210 at 3112.065 kb on - strand, within ABIE41_RS15210 at 3112.801 kb on + strand, within ABIE41_RS15210 at 3112.801 kb on + strand, within ABIE41_RS15210 at 3112.801 kb on + strand, within ABIE41_RS15210 at 3112.801 kb on + strand, within ABIE41_RS15210 at 3112.802 kb on - strand, within ABIE41_RS15210 at 3112.802 kb on - strand, within ABIE41_RS15210 at 3112.802 kb on - strand, within ABIE41_RS15210 at 3113.109 kb on + strand at 3113.109 kb on + strand at 3113.110 kb on - strand at 3113.145 kb on - strand at 3113.667 kb on + strand, within ABIE41_RS15215 at 3113.668 kb on - strand, within ABIE41_RS15215 at 3113.668 kb on - strand, within ABIE41_RS15215 at 3113.886 kb on - strand, within ABIE41_RS15215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 3,110,900 + +1.4 3,110,901 - -2.0 3,110,901 - +0.6 3,110,901 - +0.2 3,110,901 - -0.6 3,110,901 - +1.0 3,112,028 - ABIE41_RS15210 0.16 -0.9 3,112,065 - ABIE41_RS15210 0.19 -0.2 3,112,801 + ABIE41_RS15210 0.80 -0.9 3,112,801 + ABIE41_RS15210 0.80 +1.7 3,112,801 + ABIE41_RS15210 0.80 +2.1 3,112,801 + ABIE41_RS15210 0.80 -0.9 3,112,802 - ABIE41_RS15210 0.80 +0.7 3,112,802 - ABIE41_RS15210 0.80 -0.7 3,112,802 - ABIE41_RS15210 0.80 -0.7 3,113,109 + +0.5 3,113,109 + -1.0 3,113,110 - +0.5 3,113,145 - +0.4 3,113,667 + ABIE41_RS15215 0.27 +1.7 3,113,668 - ABIE41_RS15215 0.27 +0.2 3,113,668 - ABIE41_RS15215 0.27 -1.1 3,113,886 - ABIE41_RS15215 0.41 +0.1
Or see this region's nucleotide sequence