Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08840 and ABIE41_RS08845 are separated by 93 nucleotides ABIE41_RS08845 and ABIE41_RS08850 are separated by 11 nucleotides ABIE41_RS08850 and ABIE41_RS08855 are separated by 221 nucleotides
ABIE41_RS08840: ABIE41_RS08840 - carbohydrate ABC transporter permease, at 1,829,984 to 1,830,802
_RS08840
ABIE41_RS08845: ABIE41_RS08845 - dihydrodipicolinate synthase family protein, at 1,830,896 to 1,831,789
_RS08845
ABIE41_RS08850: ABIE41_RS08850 - GntR family transcriptional regulator, at 1,831,801 to 1,832,478
_RS08850
ABIE41_RS08855: ABIE41_RS08855 - sialic acid TRAP transporter substrate-binding protein SiaP, at 1,832,700 to 1,833,695
_RS08855
Position (kb) 1831
1832
1833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1831.034 kb on + strand, within ABIE41_RS08845 at 1831.232 kb on + strand, within ABIE41_RS08845 at 1831.232 kb on + strand, within ABIE41_RS08845 at 1831.233 kb on - strand, within ABIE41_RS08845 at 1831.233 kb on - strand, within ABIE41_RS08845 at 1831.233 kb on - strand, within ABIE41_RS08845 at 1831.262 kb on + strand, within ABIE41_RS08845 at 1831.319 kb on + strand, within ABIE41_RS08845 at 1831.319 kb on + strand, within ABIE41_RS08845 at 1831.320 kb on - strand, within ABIE41_RS08845 at 1831.320 kb on - strand, within ABIE41_RS08845 at 1831.320 kb on - strand, within ABIE41_RS08845 at 1831.320 kb on - strand, within ABIE41_RS08845 at 1831.427 kb on + strand, within ABIE41_RS08845 at 1831.445 kb on + strand, within ABIE41_RS08845 at 1831.445 kb on + strand, within ABIE41_RS08845 at 1831.446 kb on - strand, within ABIE41_RS08845 at 1831.446 kb on - strand, within ABIE41_RS08845 at 1831.580 kb on + strand, within ABIE41_RS08845 at 1831.580 kb on + strand, within ABIE41_RS08845 at 1831.692 kb on - strand, within ABIE41_RS08845 at 1831.861 kb on + strand at 1831.861 kb on + strand at 1832.442 kb on + strand at 1832.443 kb on - strand at 1832.457 kb on + strand at 1832.473 kb on + strand at 1832.891 kb on + strand, within ABIE41_RS08855 at 1833.039 kb on + strand, within ABIE41_RS08855 at 1833.039 kb on + strand, within ABIE41_RS08855 at 1833.040 kb on - strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.150 kb on + strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.151 kb on - strand, within ABIE41_RS08855 at 1833.306 kb on + strand, within ABIE41_RS08855 at 1833.307 kb on - strand, within ABIE41_RS08855 at 1833.307 kb on - strand, within ABIE41_RS08855
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,831,034 + ABIE41_RS08845 0.15 -0.0 1,831,232 + ABIE41_RS08845 0.38 -0.3 1,831,232 + ABIE41_RS08845 0.38 -0.6 1,831,233 - ABIE41_RS08845 0.38 +0.9 1,831,233 - ABIE41_RS08845 0.38 +0.4 1,831,233 - ABIE41_RS08845 0.38 +1.4 1,831,262 + ABIE41_RS08845 0.41 +0.2 1,831,319 + ABIE41_RS08845 0.47 +0.6 1,831,319 + ABIE41_RS08845 0.47 +0.6 1,831,320 - ABIE41_RS08845 0.47 +0.7 1,831,320 - ABIE41_RS08845 0.47 -0.7 1,831,320 - ABIE41_RS08845 0.47 -0.4 1,831,320 - ABIE41_RS08845 0.47 +0.5 1,831,427 + ABIE41_RS08845 0.59 -0.4 1,831,445 + ABIE41_RS08845 0.61 +0.9 1,831,445 + ABIE41_RS08845 0.61 -0.3 1,831,446 - ABIE41_RS08845 0.62 +2.3 1,831,446 - ABIE41_RS08845 0.62 +1.5 1,831,580 + ABIE41_RS08845 0.77 +0.7 1,831,580 + ABIE41_RS08845 0.77 -0.3 1,831,692 - ABIE41_RS08845 0.89 +0.7 1,831,861 + -2.3 1,831,861 + +0.5 1,832,442 + +1.3 1,832,443 - -0.1 1,832,457 + +0.7 1,832,473 + -2.7 1,832,891 + ABIE41_RS08855 0.19 -3.1 1,833,039 + ABIE41_RS08855 0.34 +0.4 1,833,039 + ABIE41_RS08855 0.34 -0.1 1,833,040 - ABIE41_RS08855 0.34 -0.3 1,833,150 + ABIE41_RS08855 0.45 +1.4 1,833,150 + ABIE41_RS08855 0.45 +0.9 1,833,150 + ABIE41_RS08855 0.45 -0.3 1,833,150 + ABIE41_RS08855 0.45 +0.0 1,833,150 + ABIE41_RS08855 0.45 +2.2 1,833,151 - ABIE41_RS08855 0.45 +0.0 1,833,151 - ABIE41_RS08855 0.45 -1.1 1,833,151 - ABIE41_RS08855 0.45 -0.5 1,833,151 - ABIE41_RS08855 0.45 +0.2 1,833,151 - ABIE41_RS08855 0.45 +1.3 1,833,151 - ABIE41_RS08855 0.45 +1.3 1,833,306 + ABIE41_RS08855 0.61 -0.4 1,833,307 - ABIE41_RS08855 0.61 +0.3 1,833,307 - ABIE41_RS08855 0.61 +1.0
Or see this region's nucleotide sequence