Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01615 and ABIE41_RS01620 are separated by 14 nucleotides ABIE41_RS01620 and ABIE41_RS01625 are separated by 5 nucleotides ABIE41_RS01625 and ABIE41_RS01630 are separated by 8 nucleotides ABIE41_RS01630 and ABIE41_RS01635 are separated by 109 nucleotides
ABIE41_RS01615: ABIE41_RS01615 - ABC transporter permease, at 325,051 to 325,833
_RS01615
ABIE41_RS01620: ABIE41_RS01620 - ABC transporter ATP-binding protein, at 325,848 to 326,708
_RS01620
ABIE41_RS01625: ABIE41_RS01625 - allantoinase AllB, at 326,714 to 328,168
_RS01625
ABIE41_RS01630: ABIE41_RS01630 - SDR family NAD(P)-dependent oxidoreductase, at 328,177 to 328,971
_RS01630
ABIE41_RS01635: ABIE41_RS01635 - ABC transporter substrate-binding protein, at 329,081 to 330,133
_RS01635
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 326.047 kb on + strand, within ABIE41_RS01620 at 326.047 kb on + strand, within ABIE41_RS01620 at 326.047 kb on + strand, within ABIE41_RS01620 at 326.048 kb on - strand, within ABIE41_RS01620 at 326.254 kb on + strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.255 kb on - strand, within ABIE41_RS01620 at 326.425 kb on + strand, within ABIE41_RS01620 at 326.632 kb on + strand at 326.632 kb on + strand at 326.632 kb on + strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.633 kb on - strand at 326.696 kb on + strand at 326.696 kb on + strand at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.090 kb on + strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.091 kb on - strand, within ABIE41_RS01625 at 327.360 kb on + strand, within ABIE41_RS01625 at 327.360 kb on + strand, within ABIE41_RS01625 at 327.361 kb on - strand, within ABIE41_RS01625 at 327.361 kb on - strand, within ABIE41_RS01625 at 327.535 kb on + strand, within ABIE41_RS01625 at 327.536 kb on - strand, within ABIE41_RS01625 at 327.786 kb on + strand, within ABIE41_RS01625 at 327.786 kb on + strand, within ABIE41_RS01625 at 327.786 kb on + strand, within ABIE41_RS01625 at 327.786 kb on + strand, within ABIE41_RS01625 at 327.786 kb on + strand, within ABIE41_RS01625 at 327.786 kb on + strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.787 kb on - strand, within ABIE41_RS01625 at 327.948 kb on + strand, within ABIE41_RS01625 at 327.948 kb on + strand, within ABIE41_RS01625 at 327.949 kb on - strand, within ABIE41_RS01625 at 328.294 kb on + strand, within ABIE41_RS01630 at 328.295 kb on - strand, within ABIE41_RS01630 at 328.496 kb on + strand, within ABIE41_RS01630 at 328.497 kb on - strand, within ABIE41_RS01630 at 328.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 326,047 + ABIE41_RS01620 0.23 -0.8 326,047 + ABIE41_RS01620 0.23 -0.5 326,047 + ABIE41_RS01620 0.23 -0.5 326,048 - ABIE41_RS01620 0.23 +0.0 326,254 + ABIE41_RS01620 0.47 -0.8 326,255 - ABIE41_RS01620 0.47 +0.2 326,255 - ABIE41_RS01620 0.47 -1.0 326,255 - ABIE41_RS01620 0.47 -0.2 326,255 - ABIE41_RS01620 0.47 -0.1 326,255 - ABIE41_RS01620 0.47 +0.0 326,425 + ABIE41_RS01620 0.67 -0.9 326,632 + +0.0 326,632 + +0.2 326,632 + +0.6 326,633 - +0.1 326,633 - -0.2 326,633 - +0.3 326,633 - -1.8 326,633 - -0.8 326,696 + +0.2 326,696 + +0.3 327,090 + ABIE41_RS01625 0.26 -0.1 327,090 + ABIE41_RS01625 0.26 +3.7 327,090 + ABIE41_RS01625 0.26 -0.7 327,090 + ABIE41_RS01625 0.26 -0.2 327,090 + ABIE41_RS01625 0.26 +0.6 327,090 + ABIE41_RS01625 0.26 -0.2 327,091 - ABIE41_RS01625 0.26 +0.8 327,091 - ABIE41_RS01625 0.26 -0.3 327,091 - ABIE41_RS01625 0.26 -0.3 327,091 - ABIE41_RS01625 0.26 -1.1 327,091 - ABIE41_RS01625 0.26 -0.3 327,091 - ABIE41_RS01625 0.26 -0.6 327,360 + ABIE41_RS01625 0.44 +1.1 327,360 + ABIE41_RS01625 0.44 +0.8 327,361 - ABIE41_RS01625 0.44 -0.5 327,361 - ABIE41_RS01625 0.44 +0.6 327,535 + ABIE41_RS01625 0.56 +0.7 327,536 - ABIE41_RS01625 0.56 +0.2 327,786 + ABIE41_RS01625 0.74 -1.6 327,786 + ABIE41_RS01625 0.74 +0.8 327,786 + ABIE41_RS01625 0.74 +0.5 327,786 + ABIE41_RS01625 0.74 +1.3 327,786 + ABIE41_RS01625 0.74 +0.2 327,786 + ABIE41_RS01625 0.74 +1.4 327,787 - ABIE41_RS01625 0.74 -0.7 327,787 - ABIE41_RS01625 0.74 -0.2 327,787 - ABIE41_RS01625 0.74 +0.1 327,787 - ABIE41_RS01625 0.74 -0.6 327,787 - ABIE41_RS01625 0.74 -0.1 327,787 - ABIE41_RS01625 0.74 -1.0 327,787 - ABIE41_RS01625 0.74 +0.4 327,787 - ABIE41_RS01625 0.74 -0.0 327,787 - ABIE41_RS01625 0.74 -0.0 327,948 + ABIE41_RS01625 0.85 -0.1 327,948 + ABIE41_RS01625 0.85 -0.1 327,949 - ABIE41_RS01625 0.85 -0.1 328,294 + ABIE41_RS01630 0.15 +0.1 328,295 - ABIE41_RS01630 0.15 -0.3 328,496 + ABIE41_RS01630 0.40 -0.9 328,497 - ABIE41_RS01630 0.40 -1.1 328,999 + +0.3
Or see this region's nucleotide sequence