Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS28880

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS28865 and ABIE40_RS28870 are separated by 132 nucleotidesABIE40_RS28870 and ABIE40_RS28875 are separated by 103 nucleotidesABIE40_RS28875 and ABIE40_RS28880 overlap by 11 nucleotidesABIE40_RS28880 and ABIE40_RS28885 are separated by 2 nucleotides ABIE40_RS28865: ABIE40_RS28865 - DUF72 domain-containing protein, at 475,781 to 476,472 _RS28865 ABIE40_RS28870: ABIE40_RS28870 - DUF3072 domain-containing protein, at 476,605 to 476,820 _RS28870 ABIE40_RS28875: ABIE40_RS28875 - hypothetical protein, at 476,924 to 477,199 _RS28875 ABIE40_RS28880: ABIE40_RS28880 - SMC-Scp complex subunit ScpB, at 477,189 to 477,893 _RS28880 ABIE40_RS28885: ABIE40_RS28885 - DUF1403 family protein, at 477,896 to 478,861 _RS28885 Position (kb) 477 478Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 476.345 kb on + strand, within ABIE40_RS28865at 476.346 kb on - strand, within ABIE40_RS28865at 476.346 kb on - strand, within ABIE40_RS28865at 476.382 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.387 kb on + strand, within ABIE40_RS28865at 476.387 kb on + strand, within ABIE40_RS28865at 476.388 kb on - strand, within ABIE40_RS28865at 476.412 kb on - strandat 476.493 kb on - strandat 476.534 kb on - strandat 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.705 kb on - strand, within ABIE40_RS28870at 476.705 kb on - strand, within ABIE40_RS28870at 476.705 kb on - strand, within ABIE40_RS28870at 476.746 kb on + strand, within ABIE40_RS28870at 476.893 kb on + strandat 476.893 kb on + strandat 476.893 kb on + strandat 476.893 kb on + strandat 476.894 kb on - strandat 476.894 kb on - strandat 476.995 kb on - strand, within ABIE40_RS28875at 477.067 kb on + strand, within ABIE40_RS28875at 477.067 kb on + strand, within ABIE40_RS28875at 477.068 kb on - strand, within ABIE40_RS28875at 477.188 kb on - strandat 477.302 kb on + strand, within ABIE40_RS28880at 477.364 kb on + strand, within ABIE40_RS28880at 477.364 kb on + strand, within ABIE40_RS28880at 477.364 kb on + strand, within ABIE40_RS28880at 477.364 kb on + strand, within ABIE40_RS28880at 477.364 kb on + strand, within ABIE40_RS28880at 477.364 kb on + strand, within ABIE40_RS28880at 477.364 kb on + strand, within ABIE40_RS28880at 477.365 kb on - strand, within ABIE40_RS28880at 477.365 kb on - strand, within ABIE40_RS28880at 477.365 kb on - strand, within ABIE40_RS28880at 477.365 kb on - strand, within ABIE40_RS28880at 477.365 kb on - strand, within ABIE40_RS28880at 477.365 kb on - strand, within ABIE40_RS28880at 477.365 kb on - strand, within ABIE40_RS28880at 477.368 kb on + strand, within ABIE40_RS28880at 477.368 kb on + strand, within ABIE40_RS28880at 477.368 kb on + strand, within ABIE40_RS28880at 477.368 kb on + strand, within ABIE40_RS28880at 477.368 kb on + strand, within ABIE40_RS28880at 477.368 kb on + strand, within ABIE40_RS28880at 477.369 kb on - strand, within ABIE40_RS28880at 477.369 kb on - strand, within ABIE40_RS28880at 477.369 kb on - strand, within ABIE40_RS28880at 477.369 kb on - strand, within ABIE40_RS28880at 477.369 kb on - strand, within ABIE40_RS28880at 477.370 kb on + strand, within ABIE40_RS28880at 477.370 kb on + strand, within ABIE40_RS28880at 477.370 kb on + strand, within ABIE40_RS28880at 477.371 kb on - strand, within ABIE40_RS28880at 477.371 kb on - strand, within ABIE40_RS28880at 477.371 kb on - strand, within ABIE40_RS28880at 477.371 kb on - strand, within ABIE40_RS28880at 477.371 kb on - strand, within ABIE40_RS28880at 477.502 kb on + strand, within ABIE40_RS28880at 477.502 kb on + strand, within ABIE40_RS28880at 477.646 kb on + strand, within ABIE40_RS28880at 478.127 kb on - strand, within ABIE40_RS28885at 478.130 kb on + strand, within ABIE40_RS28885at 478.130 kb on + strand, within ABIE40_RS28885at 478.130 kb on + strand, within ABIE40_RS28885at 478.186 kb on - strand, within ABIE40_RS28885at 478.262 kb on + strand, within ABIE40_RS28885at 478.263 kb on - strand, within ABIE40_RS28885at 478.263 kb on - strand, within ABIE40_RS28885at 478.364 kb on + strand, within ABIE40_RS28885at 478.477 kb on + strand, within ABIE40_RS28885at 478.477 kb on + strand, within ABIE40_RS28885at 478.478 kb on - strand, within ABIE40_RS28885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
476,345 + ABIE40_RS28865 0.82 -0.2
476,346 - ABIE40_RS28865 0.82 -1.5
476,346 - ABIE40_RS28865 0.82 -0.4
476,382 + ABIE40_RS28865 0.87 -1.2
476,383 + ABIE40_RS28865 0.87 +1.4
476,383 + ABIE40_RS28865 0.87 +0.4
476,383 + ABIE40_RS28865 0.87 +0.8
476,383 + ABIE40_RS28865 0.87 -1.0
476,383 + ABIE40_RS28865 0.87 +1.0
476,383 + ABIE40_RS28865 0.87 -0.4
476,384 - ABIE40_RS28865 0.87 +0.1
476,384 - ABIE40_RS28865 0.87 -0.4
476,384 - ABIE40_RS28865 0.87 -0.9
476,384 - ABIE40_RS28865 0.87 +0.1
476,384 - ABIE40_RS28865 0.87 -0.8
476,384 - ABIE40_RS28865 0.87 -1.0
476,384 - ABIE40_RS28865 0.87 -0.5
476,384 - ABIE40_RS28865 0.87 +0.8
476,387 + ABIE40_RS28865 0.88 -0.8
476,387 + ABIE40_RS28865 0.88 +3.4
476,388 - ABIE40_RS28865 0.88 +1.0
476,412 - -0.3
476,493 - -0.2
476,534 - +1.2
476,628 + ABIE40_RS28870 0.11 -0.8
476,628 + ABIE40_RS28870 0.11 +1.2
476,628 + ABIE40_RS28870 0.11 -0.7
476,628 + ABIE40_RS28870 0.11 +0.3
476,628 + ABIE40_RS28870 0.11 -0.2
476,628 + ABIE40_RS28870 0.11 +1.8
476,628 + ABIE40_RS28870 0.11 +0.8
476,628 + ABIE40_RS28870 0.11 -2.6
476,628 + ABIE40_RS28870 0.11 -1.1
476,629 - ABIE40_RS28870 0.11 +0.6
476,629 - ABIE40_RS28870 0.11 -1.1
476,629 - ABIE40_RS28870 0.11 +0.6
476,629 - ABIE40_RS28870 0.11 -0.3
476,629 - ABIE40_RS28870 0.11 -0.0
476,629 - ABIE40_RS28870 0.11 -0.5
476,629 - ABIE40_RS28870 0.11 +0.0
476,629 - ABIE40_RS28870 0.11 -1.2
476,705 - ABIE40_RS28870 0.46 -0.3
476,705 - ABIE40_RS28870 0.46 -1.7
476,705 - ABIE40_RS28870 0.46 +2.0
476,746 + ABIE40_RS28870 0.65 -0.9
476,893 + -0.8
476,893 + -0.6
476,893 + -1.2
476,893 + +0.0
476,894 - -0.2
476,894 - +0.6
476,995 - ABIE40_RS28875 0.26 +0.8
477,067 + ABIE40_RS28875 0.52 -0.4
477,067 + ABIE40_RS28875 0.52 +0.8
477,068 - ABIE40_RS28875 0.52 -0.4
477,188 - +0.4
477,302 + ABIE40_RS28880 0.16 -1.1
477,364 + ABIE40_RS28880 0.25 -0.6
477,364 + ABIE40_RS28880 0.25 +0.0
477,364 + ABIE40_RS28880 0.25 -0.5
477,364 + ABIE40_RS28880 0.25 -1.6
477,364 + ABIE40_RS28880 0.25 -0.2
477,364 + ABIE40_RS28880 0.25 -0.8
477,364 + ABIE40_RS28880 0.25 +1.0
477,365 - ABIE40_RS28880 0.25 -0.5
477,365 - ABIE40_RS28880 0.25 +0.8
477,365 - ABIE40_RS28880 0.25 -0.2
477,365 - ABIE40_RS28880 0.25 -1.2
477,365 - ABIE40_RS28880 0.25 +0.7
477,365 - ABIE40_RS28880 0.25 +0.5
477,365 - ABIE40_RS28880 0.25 -1.4
477,368 + ABIE40_RS28880 0.25 -0.8
477,368 + ABIE40_RS28880 0.25 -2.6
477,368 + ABIE40_RS28880 0.25 +1.6
477,368 + ABIE40_RS28880 0.25 -2.2
477,368 + ABIE40_RS28880 0.25 -0.5
477,368 + ABIE40_RS28880 0.25 +0.3
477,369 - ABIE40_RS28880 0.26 -0.3
477,369 - ABIE40_RS28880 0.26 +0.5
477,369 - ABIE40_RS28880 0.26 +0.4
477,369 - ABIE40_RS28880 0.26 +1.7
477,369 - ABIE40_RS28880 0.26 +1.7
477,370 + ABIE40_RS28880 0.26 -0.4
477,370 + ABIE40_RS28880 0.26 -0.6
477,370 + ABIE40_RS28880 0.26 +0.5
477,371 - ABIE40_RS28880 0.26 -0.6
477,371 - ABIE40_RS28880 0.26 +0.8
477,371 - ABIE40_RS28880 0.26 +0.4
477,371 - ABIE40_RS28880 0.26 -1.8
477,371 - ABIE40_RS28880 0.26 -2.4
477,502 + ABIE40_RS28880 0.44 -0.4
477,502 + ABIE40_RS28880 0.44 -3.7
477,646 + ABIE40_RS28880 0.65 -0.3
478,127 - ABIE40_RS28885 0.24 -0.0
478,130 + ABIE40_RS28885 0.24 -0.1
478,130 + ABIE40_RS28885 0.24 +1.1
478,130 + ABIE40_RS28885 0.24 -1.2
478,186 - ABIE40_RS28885 0.30 +0.1
478,262 + ABIE40_RS28885 0.38 +0.3
478,263 - ABIE40_RS28885 0.38 -0.0
478,263 - ABIE40_RS28885 0.38 -1.9
478,364 + ABIE40_RS28885 0.48 -0.1
478,477 + ABIE40_RS28885 0.60 +0.1
478,477 + ABIE40_RS28885 0.60 +1.0
478,478 - ABIE40_RS28885 0.60 -1.0

Or see this region's nucleotide sequence