Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS23000

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22990 and ABIE40_RS22995 are separated by 3 nucleotidesABIE40_RS22995 and ABIE40_RS23000 are separated by 59 nucleotidesABIE40_RS23000 and ABIE40_RS23005 are separated by 112 nucleotides ABIE40_RS22990: ABIE40_RS22990 - ABC transporter permease, at 744,834 to 745,658 _RS22990 ABIE40_RS22995: ABIE40_RS22995 - ABC transporter permease, at 745,662 to 746,426 _RS22995 ABIE40_RS23000: ABIE40_RS23000 - TetR/AcrR family transcriptional regulator, at 746,486 to 747,049 _RS23000 ABIE40_RS23005: ABIE40_RS23005 - enolase C-terminal domain-like protein, at 747,162 to 748,625 _RS23005 Position (kb) 746 747 748Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 745.509 kb on + strand, within ABIE40_RS22990at 745.509 kb on + strand, within ABIE40_RS22990at 745.510 kb on - strand, within ABIE40_RS22990at 745.624 kb on + strandat 745.625 kb on - strandat 745.725 kb on - strandat 746.175 kb on + strand, within ABIE40_RS22995at 746.175 kb on + strand, within ABIE40_RS22995at 746.176 kb on - strand, within ABIE40_RS22995at 746.176 kb on - strand, within ABIE40_RS22995at 746.229 kb on + strand, within ABIE40_RS22995at 746.229 kb on + strand, within ABIE40_RS22995at 746.229 kb on + strand, within ABIE40_RS22995at 746.229 kb on + strand, within ABIE40_RS22995at 746.230 kb on - strand, within ABIE40_RS22995at 746.230 kb on - strand, within ABIE40_RS22995at 746.230 kb on - strand, within ABIE40_RS22995at 746.230 kb on - strand, within ABIE40_RS22995at 746.230 kb on - strand, within ABIE40_RS22995at 746.230 kb on - strand, within ABIE40_RS22995at 746.230 kb on - strand, within ABIE40_RS22995at 746.260 kb on - strand, within ABIE40_RS22995at 746.433 kb on + strandat 746.483 kb on + strandat 746.483 kb on + strandat 746.483 kb on + strandat 746.514 kb on + strandat 746.514 kb on + strandat 746.536 kb on - strandat 746.688 kb on + strand, within ABIE40_RS23000at 746.688 kb on - strand, within ABIE40_RS23000at 746.688 kb on - strand, within ABIE40_RS23000at 746.688 kb on - strand, within ABIE40_RS23000at 746.728 kb on - strand, within ABIE40_RS23000at 746.728 kb on - strand, within ABIE40_RS23000at 746.873 kb on - strand, within ABIE40_RS23000at 746.874 kb on + strand, within ABIE40_RS23000at 746.922 kb on + strand, within ABIE40_RS23000at 746.922 kb on + strand, within ABIE40_RS23000at 746.923 kb on - strand, within ABIE40_RS23000at 746.926 kb on - strand, within ABIE40_RS23000at 746.926 kb on - strand, within ABIE40_RS23000at 747.044 kb on - strandat 747.180 kb on + strandat 747.180 kb on + strandat 747.180 kb on + strandat 747.180 kb on + strandat 747.181 kb on - strandat 747.181 kb on - strandat 747.183 kb on + strandat 747.183 kb on + strandat 747.184 kb on - strandat 747.185 kb on + strandat 747.185 kb on + strandat 747.186 kb on - strandat 747.516 kb on - strand, within ABIE40_RS23005at 747.516 kb on - strand, within ABIE40_RS23005at 747.612 kb on + strand, within ABIE40_RS23005at 747.612 kb on + strand, within ABIE40_RS23005at 747.612 kb on + strand, within ABIE40_RS23005at 747.613 kb on - strand, within ABIE40_RS23005at 747.627 kb on - strand, within ABIE40_RS23005at 747.793 kb on - strand, within ABIE40_RS23005at 747.912 kb on - strand, within ABIE40_RS23005at 747.912 kb on - strand, within ABIE40_RS23005at 747.921 kb on + strand, within ABIE40_RS23005at 747.921 kb on + strand, within ABIE40_RS23005at 747.922 kb on - strand, within ABIE40_RS23005at 747.922 kb on - strand, within ABIE40_RS23005at 747.922 kb on - strand, within ABIE40_RS23005at 747.922 kb on - strand, within ABIE40_RS23005at 747.922 kb on - strand, within ABIE40_RS23005at 747.922 kb on - strand, within ABIE40_RS23005at 747.922 kb on - strand, within ABIE40_RS23005at 747.936 kb on + strand, within ABIE40_RS23005at 747.937 kb on - strand, within ABIE40_RS23005at 747.939 kb on + strand, within ABIE40_RS23005at 747.939 kb on + strand, within ABIE40_RS23005at 747.939 kb on + strand, within ABIE40_RS23005

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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745,509 + ABIE40_RS22990 0.82 -0.8
745,509 + ABIE40_RS22990 0.82 +0.1
745,510 - ABIE40_RS22990 0.82 -1.7
745,624 + +0.5
745,625 - +0.4
745,725 - +0.5
746,175 + ABIE40_RS22995 0.67 +0.5
746,175 + ABIE40_RS22995 0.67 -0.0
746,176 - ABIE40_RS22995 0.67 -0.3
746,176 - ABIE40_RS22995 0.67 -0.1
746,229 + ABIE40_RS22995 0.74 +0.9
746,229 + ABIE40_RS22995 0.74 -0.1
746,229 + ABIE40_RS22995 0.74 -0.9
746,229 + ABIE40_RS22995 0.74 -0.4
746,230 - ABIE40_RS22995 0.74 +0.0
746,230 - ABIE40_RS22995 0.74 +1.0
746,230 - ABIE40_RS22995 0.74 -0.6
746,230 - ABIE40_RS22995 0.74 +0.5
746,230 - ABIE40_RS22995 0.74 +0.5
746,230 - ABIE40_RS22995 0.74 -0.9
746,230 - ABIE40_RS22995 0.74 -0.8
746,260 - ABIE40_RS22995 0.78 +0.9
746,433 + +0.5
746,483 + -0.4
746,483 + +0.0
746,483 + -0.6
746,514 + -2.1
746,514 + -1.4
746,536 - -2.0
746,688 + ABIE40_RS23000 0.36 +1.8
746,688 - ABIE40_RS23000 0.36 -1.5
746,688 - ABIE40_RS23000 0.36 -1.2
746,688 - ABIE40_RS23000 0.36 -2.2
746,728 - ABIE40_RS23000 0.43 -1.5
746,728 - ABIE40_RS23000 0.43 -1.7
746,873 - ABIE40_RS23000 0.69 -2.1
746,874 + ABIE40_RS23000 0.69 -1.0
746,922 + ABIE40_RS23000 0.77 -3.0
746,922 + ABIE40_RS23000 0.77 +0.6
746,923 - ABIE40_RS23000 0.77 -0.9
746,926 - ABIE40_RS23000 0.78 -1.5
746,926 - ABIE40_RS23000 0.78 -0.5
747,044 - -1.7
747,180 + +0.5
747,180 + -1.8
747,180 + +0.2
747,180 + -0.2
747,181 - +1.8
747,181 - -0.3
747,183 + +0.5
747,183 + +0.6
747,184 - +0.4
747,185 + +0.9
747,185 + +2.1
747,186 - -0.1
747,516 - ABIE40_RS23005 0.24 -0.5
747,516 - ABIE40_RS23005 0.24 -0.4
747,612 + ABIE40_RS23005 0.31 -0.9
747,612 + ABIE40_RS23005 0.31 +1.2
747,612 + ABIE40_RS23005 0.31 +1.4
747,613 - ABIE40_RS23005 0.31 +0.9
747,627 - ABIE40_RS23005 0.32 -0.2
747,793 - ABIE40_RS23005 0.43 -0.1
747,912 - ABIE40_RS23005 0.51 +1.5
747,912 - ABIE40_RS23005 0.51 -0.5
747,921 + ABIE40_RS23005 0.52 -0.3
747,921 + ABIE40_RS23005 0.52 +2.0
747,922 - ABIE40_RS23005 0.52 -0.9
747,922 - ABIE40_RS23005 0.52 +1.3
747,922 - ABIE40_RS23005 0.52 +0.1
747,922 - ABIE40_RS23005 0.52 -0.6
747,922 - ABIE40_RS23005 0.52 +0.2
747,922 - ABIE40_RS23005 0.52 -1.2
747,922 - ABIE40_RS23005 0.52 +0.6
747,936 + ABIE40_RS23005 0.53 +0.8
747,937 - ABIE40_RS23005 0.53 +0.4
747,939 + ABIE40_RS23005 0.53 +1.0
747,939 + ABIE40_RS23005 0.53 -0.1
747,939 + ABIE40_RS23005 0.53 +0.1

Or see this region's nucleotide sequence