Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19605 and ABIE40_RS19610 are separated by 156 nucleotides ABIE40_RS19610 and ABIE40_RS19615 overlap by 4 nucleotides ABIE40_RS19615 and ABIE40_RS19620 are separated by 2 nucleotides
ABIE40_RS19605: ABIE40_RS19605 - alpha/beta hydrolase, at 17,326 to 18,108
_RS19605
ABIE40_RS19610: ABIE40_RS19610 - sigma-70 family RNA polymerase sigma factor, at 18,265 to 18,846
_RS19610
ABIE40_RS19615: ABIE40_RS19615 - DUF1109 domain-containing protein, at 18,843 to 19,490
_RS19615
ABIE40_RS19620: ABIE40_RS19620 - pca operon transcription factor PcaQ, at 19,493 to 20,419
_RS19620
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.979 kb on - strand, within ABIE40_RS19605 at 17.979 kb on - strand, within ABIE40_RS19605 at 17.979 kb on - strand, within ABIE40_RS19605 at 17.979 kb on - strand, within ABIE40_RS19605 at 18.233 kb on - strand at 18.233 kb on - strand at 18.331 kb on + strand, within ABIE40_RS19610 at 18.331 kb on + strand, within ABIE40_RS19610 at 18.332 kb on - strand, within ABIE40_RS19610 at 18.352 kb on - strand, within ABIE40_RS19610 at 18.426 kb on + strand, within ABIE40_RS19610 at 18.520 kb on + strand, within ABIE40_RS19610 at 18.521 kb on - strand, within ABIE40_RS19610 at 18.633 kb on + strand, within ABIE40_RS19610 at 18.633 kb on + strand, within ABIE40_RS19610 at 18.634 kb on - strand, within ABIE40_RS19610 at 18.823 kb on + strand at 19.374 kb on + strand, within ABIE40_RS19615 at 19.375 kb on - strand, within ABIE40_RS19615 at 19.488 kb on + strand at 19.833 kb on + strand, within ABIE40_RS19620 at 19.833 kb on + strand, within ABIE40_RS19620 at 19.834 kb on - strand, within ABIE40_RS19620 at 19.917 kb on + strand, within ABIE40_RS19620 at 19.918 kb on - strand, within ABIE40_RS19620 at 20.009 kb on + strand, within ABIE40_RS19620 at 20.009 kb on + strand, within ABIE40_RS19620 at 20.010 kb on - strand, within ABIE40_RS19620 at 20.010 kb on - strand, within ABIE40_RS19620 at 20.010 kb on - strand, within ABIE40_RS19620 at 20.010 kb on - strand, within ABIE40_RS19620 at 20.010 kb on - strand, within ABIE40_RS19620 at 20.010 kb on - strand, within ABIE40_RS19620 at 20.053 kb on + strand, within ABIE40_RS19620 at 20.053 kb on + strand, within ABIE40_RS19620 at 20.053 kb on + strand, within ABIE40_RS19620 at 20.054 kb on - strand, within ABIE40_RS19620 at 20.054 kb on - strand, within ABIE40_RS19620 at 20.402 kb on + strand at 20.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 17,979 - ABIE40_RS19605 0.83 -0.2 17,979 - ABIE40_RS19605 0.83 -1.5 17,979 - ABIE40_RS19605 0.83 -1.8 17,979 - ABIE40_RS19605 0.83 +0.8 18,233 - -0.2 18,233 - +0.7 18,331 + ABIE40_RS19610 0.11 -0.1 18,331 + ABIE40_RS19610 0.11 -0.8 18,332 - ABIE40_RS19610 0.12 -0.8 18,352 - ABIE40_RS19610 0.15 -0.7 18,426 + ABIE40_RS19610 0.28 -1.3 18,520 + ABIE40_RS19610 0.44 +1.4 18,521 - ABIE40_RS19610 0.44 -0.4 18,633 + ABIE40_RS19610 0.63 -0.9 18,633 + ABIE40_RS19610 0.63 +0.4 18,634 - ABIE40_RS19610 0.63 -0.2 18,823 + -1.9 19,374 + ABIE40_RS19615 0.82 -2.5 19,375 - ABIE40_RS19615 0.82 -1.3 19,488 + -1.3 19,833 + ABIE40_RS19620 0.37 +0.6 19,833 + ABIE40_RS19620 0.37 +0.1 19,834 - ABIE40_RS19620 0.37 -0.1 19,917 + ABIE40_RS19620 0.46 +0.0 19,918 - ABIE40_RS19620 0.46 +0.3 20,009 + ABIE40_RS19620 0.56 +0.1 20,009 + ABIE40_RS19620 0.56 -0.1 20,010 - ABIE40_RS19620 0.56 -0.5 20,010 - ABIE40_RS19620 0.56 -0.2 20,010 - ABIE40_RS19620 0.56 +1.3 20,010 - ABIE40_RS19620 0.56 +3.0 20,010 - ABIE40_RS19620 0.56 -1.9 20,010 - ABIE40_RS19620 0.56 -1.0 20,053 + ABIE40_RS19620 0.60 -0.8 20,053 + ABIE40_RS19620 0.60 +0.3 20,053 + ABIE40_RS19620 0.60 +0.7 20,054 - ABIE40_RS19620 0.61 -0.6 20,054 - ABIE40_RS19620 0.61 -2.1 20,402 + +0.5 20,467 - -1.3
Or see this region's nucleotide sequence