Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS07190 and ABIE40_RS07195 overlap by 1 nucleotides ABIE40_RS07195 and ABIE40_RS07200 are separated by 16 nucleotides ABIE40_RS07200 and ABIE40_RS07205 are separated by 10 nucleotides
ABIE40_RS07190: ABIE40_RS07190 - NADH-quinone oxidoreductase subunit D, at 1,405,522 to 1,406,712
_RS07190
ABIE40_RS07195: ABIE40_RS07195 - hypothetical protein, at 1,406,712 to 1,406,990
_RS07195
ABIE40_RS07200: ABIE40_RS07200 - NADH-quinone oxidoreductase subunit E, at 1,407,007 to 1,408,134
_RS07200
ABIE40_RS07205: ABIE40_RS07205 - NADH-quinone oxidoreductase subunit NuoF, at 1,408,145 to 1,409,449
_RS07205
Position (kb) 1407
1408
1409 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1406.798 kb on + strand, within ABIE40_RS07195 at 1406.798 kb on + strand, within ABIE40_RS07195 at 1406.818 kb on + strand, within ABIE40_RS07195 at 1406.818 kb on + strand, within ABIE40_RS07195 at 1407.942 kb on + strand, within ABIE40_RS07200 at 1408.021 kb on + strand, within ABIE40_RS07200 at 1408.132 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 1,406,798 + ABIE40_RS07195 0.31 -0.4 1,406,798 + ABIE40_RS07195 0.31 +0.0 1,406,818 + ABIE40_RS07195 0.38 -1.2 1,406,818 + ABIE40_RS07195 0.38 -0.2 1,407,942 + ABIE40_RS07200 0.83 -1.0 1,408,021 + ABIE40_RS07200 0.90 -1.9 1,408,132 + +3.5
Or see this region's nucleotide sequence