Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04665

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04660 and ABIE40_RS04665 are separated by 105 nucleotidesABIE40_RS04665 and ABIE40_RS04670 are separated by 297 nucleotides ABIE40_RS04660: ABIE40_RS04660 - L,D-transpeptidase, at 916,767 to 917,483 _RS04660 ABIE40_RS04665: ABIE40_RS04665 - ester cyclase, at 917,589 to 917,987 _RS04665 ABIE40_RS04670: ABIE40_RS04670 - phytanoyl-CoA dioxygenase family protein, at 918,285 to 919,250 _RS04670 Position (kb) 917 918Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 916.607 kb on + strandat 916.644 kb on + strandat 916.644 kb on + strandat 916.645 kb on - strandat 916.645 kb on - strandat 916.645 kb on - strandat 916.651 kb on + strandat 916.652 kb on - strandat 916.652 kb on - strandat 916.652 kb on - strandat 916.652 kb on - strandat 916.656 kb on - strandat 916.859 kb on + strand, within ABIE40_RS04660at 916.859 kb on + strand, within ABIE40_RS04660at 916.859 kb on + strand, within ABIE40_RS04660at 916.859 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 917.094 kb on + strand, within ABIE40_RS04660at 917.094 kb on + strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.253 kb on + strand, within ABIE40_RS04660at 917.253 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.317 kb on - strand, within ABIE40_RS04660at 917.317 kb on - strand, within ABIE40_RS04660at 917.317 kb on - strand, within ABIE40_RS04660at 917.346 kb on + strand, within ABIE40_RS04660at 917.439 kb on + strandat 917.481 kb on + strandat 917.481 kb on + strandat 917.481 kb on + strandat 917.482 kb on - strandat 917.543 kb on + strandat 917.543 kb on + strandat 917.543 kb on + strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.545 kb on - strandat 917.582 kb on + strandat 917.582 kb on + strandat 917.582 kb on + strandat 917.582 kb on + strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.584 kb on + strandat 917.584 kb on + strandat 917.668 kb on + strand, within ABIE40_RS04665at 917.668 kb on + strand, within ABIE40_RS04665at 917.668 kb on + strand, within ABIE40_RS04665at 917.828 kb on - strand, within ABIE40_RS04665at 917.876 kb on + strand, within ABIE40_RS04665at 917.876 kb on + strand, within ABIE40_RS04665at 917.876 kb on + strand, within ABIE40_RS04665at 917.877 kb on - strand, within ABIE40_RS04665at 917.877 kb on - strand, within ABIE40_RS04665at 917.942 kb on + strand, within ABIE40_RS04665at 917.942 kb on + strand, within ABIE40_RS04665at 917.943 kb on - strand, within ABIE40_RS04665at 917.945 kb on - strand, within ABIE40_RS04665at 917.945 kb on - strand, within ABIE40_RS04665at 917.945 kb on - strand, within ABIE40_RS04665at 917.953 kb on + strandat 918.024 kb on + strandat 918.038 kb on + strandat 918.038 kb on + strandat 918.278 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.379 kb on - strandat 918.379 kb on - strandat 918.590 kb on + strand, within ABIE40_RS04670at 918.591 kb on - strand, within ABIE40_RS04670at 918.591 kb on - strand, within ABIE40_RS04670at 918.591 kb on - strand, within ABIE40_RS04670at 918.900 kb on + strand, within ABIE40_RS04670at 918.900 kb on + strand, within ABIE40_RS04670at 918.900 kb on + strand, within ABIE40_RS04670at 918.900 kb on + strand, within ABIE40_RS04670at 918.900 kb on + strand, within ABIE40_RS04670at 918.901 kb on - strand, within ABIE40_RS04670at 918.901 kb on - strand, within ABIE40_RS04670at 918.901 kb on - strand, within ABIE40_RS04670at 918.901 kb on - strand, within ABIE40_RS04670at 918.945 kb on + strand, within ABIE40_RS04670at 918.945 kb on + strand, within ABIE40_RS04670at 918.945 kb on + strand, within ABIE40_RS04670at 918.980 kb on + strand, within ABIE40_RS04670at 918.980 kb on + strand, within ABIE40_RS04670at 918.980 kb on + strand, within ABIE40_RS04670at 918.980 kb on + strand, within ABIE40_RS04670at 918.981 kb on - strand, within ABIE40_RS04670at 918.981 kb on - strand, within ABIE40_RS04670at 918.981 kb on - strand, within ABIE40_RS04670at 918.981 kb on - strand, within ABIE40_RS04670at 918.981 kb on - strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.984 kb on + strand, within ABIE40_RS04670at 918.985 kb on - strand, within ABIE40_RS04670at 918.985 kb on - strand, within ABIE40_RS04670at 918.985 kb on - strand, within ABIE40_RS04670at 918.985 kb on - strand, within ABIE40_RS04670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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916,607 + -0.0
916,644 + +0.0
916,644 + +1.1
916,645 - +0.5
916,645 - -1.2
916,645 - +1.2
916,651 + +2.9
916,652 - -0.5
916,652 - -0.0
916,652 - -1.3
916,652 - +0.9
916,656 - +0.2
916,859 + ABIE40_RS04660 0.13 +0.5
916,859 + ABIE40_RS04660 0.13 -0.8
916,859 + ABIE40_RS04660 0.13 -0.5
916,859 + ABIE40_RS04660 0.13 -0.6
916,950 + ABIE40_RS04660 0.26 -1.3
916,950 + ABIE40_RS04660 0.26 -0.6
916,950 + ABIE40_RS04660 0.26 -0.7
916,950 + ABIE40_RS04660 0.26 -0.9
916,950 + ABIE40_RS04660 0.26 -3.7
916,950 + ABIE40_RS04660 0.26 -1.3
916,950 + ABIE40_RS04660 0.26 -2.4
916,950 + ABIE40_RS04660 0.26 -0.7
916,950 + ABIE40_RS04660 0.26 -0.8
916,951 - ABIE40_RS04660 0.26 -0.6
916,951 - ABIE40_RS04660 0.26 -0.4
916,951 - ABIE40_RS04660 0.26 -0.2
916,951 - ABIE40_RS04660 0.26 +0.2
916,951 - ABIE40_RS04660 0.26 +1.7
916,951 - ABIE40_RS04660 0.26 +0.8
916,951 - ABIE40_RS04660 0.26 -0.9
916,951 - ABIE40_RS04660 0.26 -0.0
916,951 - ABIE40_RS04660 0.26 +0.6
916,951 - ABIE40_RS04660 0.26 -0.3
916,951 - ABIE40_RS04660 0.26 +0.5
917,094 + ABIE40_RS04660 0.46 -0.3
917,094 + ABIE40_RS04660 0.46 -0.2
917,095 - ABIE40_RS04660 0.46 +0.4
917,095 - ABIE40_RS04660 0.46 -0.5
917,095 - ABIE40_RS04660 0.46 -0.8
917,095 - ABIE40_RS04660 0.46 -0.1
917,095 - ABIE40_RS04660 0.46 -1.8
917,095 - ABIE40_RS04660 0.46 -0.7
917,253 + ABIE40_RS04660 0.68 -0.5
917,253 + ABIE40_RS04660 0.68 +0.1
917,316 + ABIE40_RS04660 0.77 -2.1
917,316 + ABIE40_RS04660 0.77 +0.2
917,316 + ABIE40_RS04660 0.77 -0.1
917,316 + ABIE40_RS04660 0.77 +0.1
917,317 - ABIE40_RS04660 0.77 -0.8
917,317 - ABIE40_RS04660 0.77 +0.1
917,317 - ABIE40_RS04660 0.77 +0.0
917,346 + ABIE40_RS04660 0.81 +0.1
917,439 + -0.6
917,481 + +0.6
917,481 + -0.6
917,481 + +0.9
917,482 - -0.5
917,543 + -0.1
917,543 + +0.4
917,543 + +2.3
917,544 - -0.8
917,544 - -1.0
917,544 - -0.6
917,544 - +0.7
917,544 - -1.4
917,544 - -0.2
917,544 - +0.3
917,544 - -0.5
917,544 - -0.8
917,545 - -0.1
917,582 + -1.0
917,582 + +0.9
917,582 + -0.9
917,582 + +0.3
917,583 - -0.9
917,583 - -0.0
917,583 - +0.7
917,583 - -1.4
917,583 - +0.6
917,584 + -0.8
917,584 + +1.0
917,668 + ABIE40_RS04665 0.20 -0.2
917,668 + ABIE40_RS04665 0.20 +0.2
917,668 + ABIE40_RS04665 0.20 -0.5
917,828 - ABIE40_RS04665 0.60 +0.1
917,876 + ABIE40_RS04665 0.72 -0.7
917,876 + ABIE40_RS04665 0.72 +0.9
917,876 + ABIE40_RS04665 0.72 -0.5
917,877 - ABIE40_RS04665 0.72 -1.0
917,877 - ABIE40_RS04665 0.72 -0.3
917,942 + ABIE40_RS04665 0.88 +0.1
917,942 + ABIE40_RS04665 0.88 +0.3
917,943 - ABIE40_RS04665 0.89 -0.3
917,945 - ABIE40_RS04665 0.89 -0.7
917,945 - ABIE40_RS04665 0.89 -0.1
917,945 - ABIE40_RS04665 0.89 -1.4
917,953 + -0.1
918,024 + -2.1
918,038 + -0.8
918,038 + +0.1
918,278 + -0.7
918,378 + +0.1
918,378 + -0.3
918,378 + +1.3
918,378 + +0.1
918,378 + +0.7
918,379 - -1.1
918,379 - +1.1
918,590 + ABIE40_RS04670 0.32 -0.4
918,591 - ABIE40_RS04670 0.32 -0.7
918,591 - ABIE40_RS04670 0.32 +4.1
918,591 - ABIE40_RS04670 0.32 -0.6
918,900 + ABIE40_RS04670 0.64 -1.1
918,900 + ABIE40_RS04670 0.64 -0.0
918,900 + ABIE40_RS04670 0.64 +1.0
918,900 + ABIE40_RS04670 0.64 +1.8
918,900 + ABIE40_RS04670 0.64 -0.3
918,901 - ABIE40_RS04670 0.64 -0.3
918,901 - ABIE40_RS04670 0.64 +0.4
918,901 - ABIE40_RS04670 0.64 -0.4
918,901 - ABIE40_RS04670 0.64 -0.9
918,945 + ABIE40_RS04670 0.68 -0.1
918,945 + ABIE40_RS04670 0.68 -1.2
918,945 + ABIE40_RS04670 0.68 -0.4
918,980 + ABIE40_RS04670 0.72 -1.0
918,980 + ABIE40_RS04670 0.72 +0.4
918,980 + ABIE40_RS04670 0.72 +0.5
918,980 + ABIE40_RS04670 0.72 -0.3
918,981 - ABIE40_RS04670 0.72 +0.9
918,981 - ABIE40_RS04670 0.72 -0.6
918,981 - ABIE40_RS04670 0.72 +0.5
918,981 - ABIE40_RS04670 0.72 -0.2
918,981 - ABIE40_RS04670 0.72 +1.3
918,984 + ABIE40_RS04670 0.72 -1.8
918,984 + ABIE40_RS04670 0.72 +0.7
918,984 + ABIE40_RS04670 0.72 +0.1
918,984 + ABIE40_RS04670 0.72 -0.5
918,984 + ABIE40_RS04670 0.72 +0.1
918,984 + ABIE40_RS04670 0.72 +1.3
918,984 + ABIE40_RS04670 0.72 -0.3
918,984 + ABIE40_RS04670 0.72 -4.0
918,984 + ABIE40_RS04670 0.72 -0.2
918,984 + ABIE40_RS04670 0.72 +0.2
918,984 + ABIE40_RS04670 0.72 -0.4
918,984 + ABIE40_RS04670 0.72 -0.2
918,985 - ABIE40_RS04670 0.72 -0.3
918,985 - ABIE40_RS04670 0.72 +0.5
918,985 - ABIE40_RS04670 0.72 -1.0
918,985 - ABIE40_RS04670 0.72 +1.1

Or see this region's nucleotide sequence