Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04040

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04035 and ABIE40_RS04040 are separated by 103 nucleotidesABIE40_RS04040 and ABIE40_RS04045 are separated by 6 nucleotidesABIE40_RS04045 and ABIE40_RS04050 are separated by 17 nucleotides ABIE40_RS04035: ABIE40_RS04035 - aldehyde reductase, at 801,109 to 802,140 _RS04035 ABIE40_RS04040: ABIE40_RS04040 - pyrophosphatase, at 802,244 to 802,543 _RS04040 ABIE40_RS04045: ABIE40_RS04045 - GNAT family N-acetyltransferase, at 802,550 to 803,041 _RS04045 ABIE40_RS04050: ABIE40_RS04050 - metalloprotease TldD, at 803,059 to 804,474 _RS04050 Position (kb) 802 803Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.346 kb on + strand, within ABIE40_RS04035at 801.347 kb on - strand, within ABIE40_RS04035at 801.347 kb on - strand, within ABIE40_RS04035at 801.347 kb on - strand, within ABIE40_RS04035at 801.347 kb on - strand, within ABIE40_RS04035at 801.347 kb on - strand, within ABIE40_RS04035at 801.347 kb on - strand, within ABIE40_RS04035at 801.580 kb on + strand, within ABIE40_RS04035at 801.679 kb on + strand, within ABIE40_RS04035at 801.680 kb on - strand, within ABIE40_RS04035at 802.018 kb on + strand, within ABIE40_RS04035at 802.018 kb on + strand, within ABIE40_RS04035at 802.018 kb on + strand, within ABIE40_RS04035at 802.018 kb on + strand, within ABIE40_RS04035at 802.195 kb on + strandat 802.195 kb on + strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.196 kb on - strandat 802.226 kb on + strandat 802.244 kb on - strandat 802.290 kb on - strand, within ABIE40_RS04040at 802.542 kb on - strandat 802.610 kb on + strand, within ABIE40_RS04045at 802.610 kb on + strand, within ABIE40_RS04045at 802.610 kb on + strand, within ABIE40_RS04045at 802.611 kb on - strand, within ABIE40_RS04045at 803.084 kb on - strandat 803.276 kb on + strand, within ABIE40_RS04050at 803.276 kb on + strand, within ABIE40_RS04050at 803.277 kb on - strand, within ABIE40_RS04050at 803.277 kb on - strand, within ABIE40_RS04050at 803.348 kb on + strand, within ABIE40_RS04050at 803.349 kb on - strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.408 kb on + strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.409 kb on - strand, within ABIE40_RS04050at 803.444 kb on + strand, within ABIE40_RS04050at 803.445 kb on - strand, within ABIE40_RS04050at 803.513 kb on + strand, within ABIE40_RS04050at 803.513 kb on + strand, within ABIE40_RS04050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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801,346 + ABIE40_RS04035 0.23 +0.4
801,346 + ABIE40_RS04035 0.23 -0.3
801,346 + ABIE40_RS04035 0.23 +0.1
801,346 + ABIE40_RS04035 0.23 -2.2
801,346 + ABIE40_RS04035 0.23 +0.1
801,346 + ABIE40_RS04035 0.23 -1.0
801,346 + ABIE40_RS04035 0.23 +1.6
801,346 + ABIE40_RS04035 0.23 +0.1
801,346 + ABIE40_RS04035 0.23 -1.4
801,346 + ABIE40_RS04035 0.23 -0.3
801,346 + ABIE40_RS04035 0.23 -1.7
801,346 + ABIE40_RS04035 0.23 -0.2
801,346 + ABIE40_RS04035 0.23 +0.1
801,346 + ABIE40_RS04035 0.23 +0.2
801,346 + ABIE40_RS04035 0.23 +1.5
801,347 - ABIE40_RS04035 0.23 +1.3
801,347 - ABIE40_RS04035 0.23 +0.5
801,347 - ABIE40_RS04035 0.23 -2.0
801,347 - ABIE40_RS04035 0.23 -0.7
801,347 - ABIE40_RS04035 0.23 +0.4
801,347 - ABIE40_RS04035 0.23 +2.3
801,580 + ABIE40_RS04035 0.46 +0.6
801,679 + ABIE40_RS04035 0.55 +1.2
801,680 - ABIE40_RS04035 0.55 +0.2
802,018 + ABIE40_RS04035 0.88 -1.0
802,018 + ABIE40_RS04035 0.88 +0.2
802,018 + ABIE40_RS04035 0.88 +1.3
802,018 + ABIE40_RS04035 0.88 -0.9
802,195 + -0.3
802,195 + +0.1
802,196 - +0.7
802,196 - +0.1
802,196 - -0.1
802,196 - -0.1
802,196 - -1.3
802,226 + -0.7
802,244 - +0.6
802,290 - ABIE40_RS04040 0.15 +0.1
802,542 - +0.1
802,610 + ABIE40_RS04045 0.12 +0.0
802,610 + ABIE40_RS04045 0.12 -0.9
802,610 + ABIE40_RS04045 0.12 +0.3
802,611 - ABIE40_RS04045 0.12 +0.3
803,084 - -0.2
803,276 + ABIE40_RS04050 0.15 +0.6
803,276 + ABIE40_RS04050 0.15 -3.3
803,277 - ABIE40_RS04050 0.15 -1.1
803,277 - ABIE40_RS04050 0.15 +1.0
803,348 + ABIE40_RS04050 0.20 -0.9
803,349 - ABIE40_RS04050 0.20 +0.8
803,408 + ABIE40_RS04050 0.25 +0.6
803,408 + ABIE40_RS04050 0.25 +0.0
803,408 + ABIE40_RS04050 0.25 +0.8
803,408 + ABIE40_RS04050 0.25 -0.6
803,408 + ABIE40_RS04050 0.25 -0.1
803,408 + ABIE40_RS04050 0.25 -0.6
803,408 + ABIE40_RS04050 0.25 -2.5
803,408 + ABIE40_RS04050 0.25 -1.1
803,409 - ABIE40_RS04050 0.25 +0.0
803,409 - ABIE40_RS04050 0.25 +0.3
803,409 - ABIE40_RS04050 0.25 -0.5
803,409 - ABIE40_RS04050 0.25 +0.0
803,409 - ABIE40_RS04050 0.25 +0.5
803,409 - ABIE40_RS04050 0.25 -0.2
803,409 - ABIE40_RS04050 0.25 +1.3
803,409 - ABIE40_RS04050 0.25 -0.7
803,409 - ABIE40_RS04050 0.25 -0.3
803,409 - ABIE40_RS04050 0.25 +0.5
803,409 - ABIE40_RS04050 0.25 -0.8
803,409 - ABIE40_RS04050 0.25 +0.6
803,409 - ABIE40_RS04050 0.25 -1.6
803,409 - ABIE40_RS04050 0.25 +1.2
803,444 + ABIE40_RS04050 0.27 +0.0
803,445 - ABIE40_RS04050 0.27 -1.5
803,513 + ABIE40_RS04050 0.32 -0.2
803,513 + ABIE40_RS04050 0.32 +0.1

Or see this region's nucleotide sequence