Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02090

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02085 and ABIE40_RS02090 overlap by 1 nucleotidesABIE40_RS02090 and ABIE40_RS02095 overlap by 4 nucleotidesABIE40_RS02095 and ABIE40_RS02100 are separated by 207 nucleotides ABIE40_RS02085: ABIE40_RS02085 - ABC transporter permease, at 409,007 to 410,086 _RS02085 ABIE40_RS02090: ABIE40_RS02090 - ATP-binding cassette domain-containing protein, at 410,086 to 410,868 _RS02090 ABIE40_RS02095: ABIE40_RS02095 - nucleoside triphosphate hydrolase, at 410,865 to 411,494 _RS02095 ABIE40_RS02100: ABIE40_RS02100 - MFS transporter, at 411,702 to 412,844 _RS02100 Position (kb) 410 411Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 409.264 kb on + strand, within ABIE40_RS02085at 409.433 kb on + strand, within ABIE40_RS02085at 409.437 kb on + strand, within ABIE40_RS02085at 409.437 kb on + strand, within ABIE40_RS02085at 409.437 kb on + strand, within ABIE40_RS02085at 409.437 kb on + strand, within ABIE40_RS02085at 409.437 kb on + strand, within ABIE40_RS02085at 409.438 kb on - strand, within ABIE40_RS02085at 409.438 kb on - strand, within ABIE40_RS02085at 409.438 kb on - strand, within ABIE40_RS02085at 409.460 kb on - strand, within ABIE40_RS02085at 409.526 kb on + strand, within ABIE40_RS02085at 409.526 kb on + strand, within ABIE40_RS02085at 409.526 kb on + strand, within ABIE40_RS02085at 409.527 kb on - strand, within ABIE40_RS02085at 409.597 kb on + strand, within ABIE40_RS02085at 409.598 kb on - strand, within ABIE40_RS02085at 409.598 kb on - strand, within ABIE40_RS02085at 409.598 kb on - strand, within ABIE40_RS02085at 409.598 kb on - strand, within ABIE40_RS02085at 409.598 kb on - strand, within ABIE40_RS02085at 409.629 kb on - strand, within ABIE40_RS02085at 409.629 kb on - strand, within ABIE40_RS02085at 409.670 kb on + strand, within ABIE40_RS02085at 409.670 kb on + strand, within ABIE40_RS02085at 409.670 kb on + strand, within ABIE40_RS02085at 409.670 kb on + strand, within ABIE40_RS02085at 409.670 kb on + strand, within ABIE40_RS02085at 409.684 kb on + strand, within ABIE40_RS02085at 409.684 kb on + strand, within ABIE40_RS02085at 409.684 kb on + strand, within ABIE40_RS02085at 409.685 kb on - strand, within ABIE40_RS02085at 409.685 kb on - strand, within ABIE40_RS02085at 409.706 kb on + strand, within ABIE40_RS02085at 409.706 kb on + strand, within ABIE40_RS02085at 409.707 kb on - strand, within ABIE40_RS02085at 409.707 kb on - strand, within ABIE40_RS02085at 409.707 kb on - strand, within ABIE40_RS02085at 409.707 kb on - strand, within ABIE40_RS02085at 409.762 kb on + strand, within ABIE40_RS02085at 409.762 kb on + strand, within ABIE40_RS02085at 409.762 kb on + strand, within ABIE40_RS02085at 409.762 kb on + strand, within ABIE40_RS02085at 409.762 kb on + strand, within ABIE40_RS02085at 409.763 kb on - strand, within ABIE40_RS02085at 409.763 kb on - strand, within ABIE40_RS02085at 409.763 kb on - strand, within ABIE40_RS02085at 409.771 kb on - strand, within ABIE40_RS02085at 409.778 kb on + strand, within ABIE40_RS02085at 409.778 kb on + strand, within ABIE40_RS02085at 409.778 kb on + strand, within ABIE40_RS02085at 409.778 kb on + strand, within ABIE40_RS02085at 409.778 kb on + strand, within ABIE40_RS02085at 409.778 kb on + strand, within ABIE40_RS02085at 409.779 kb on - strand, within ABIE40_RS02085at 409.779 kb on - strand, within ABIE40_RS02085at 409.779 kb on - strand, within ABIE40_RS02085at 409.779 kb on - strand, within ABIE40_RS02085at 409.779 kb on - strand, within ABIE40_RS02085at 409.779 kb on - strand, within ABIE40_RS02085at 409.779 kb on - strand, within ABIE40_RS02085at 409.958 kb on - strand, within ABIE40_RS02085at 410.015 kb on + strandat 410.015 kb on + strandat 410.015 kb on + strandat 410.015 kb on + strandat 410.015 kb on + strandat 410.015 kb on + strandat 410.015 kb on + strandat 410.015 kb on + strandat 410.016 kb on - strandat 410.016 kb on - strandat 410.016 kb on - strandat 410.016 kb on - strandat 410.016 kb on - strandat 410.016 kb on - strandat 410.016 kb on - strandat 410.016 kb on - strandat 410.131 kb on + strandat 410.131 kb on + strandat 410.132 kb on - strandat 410.173 kb on + strand, within ABIE40_RS02090at 410.173 kb on + strand, within ABIE40_RS02090at 410.173 kb on + strand, within ABIE40_RS02090at 410.174 kb on - strand, within ABIE40_RS02090at 410.174 kb on - strand, within ABIE40_RS02090at 410.344 kb on + strand, within ABIE40_RS02090at 410.344 kb on + strand, within ABIE40_RS02090at 410.345 kb on - strand, within ABIE40_RS02090at 410.797 kb on + strandat 410.797 kb on + strandat 410.798 kb on - strandat 410.798 kb on - strandat 410.798 kb on - strandat 410.879 kb on - strandat 410.981 kb on + strand, within ABIE40_RS02095at 411.054 kb on - strand, within ABIE40_RS02095at 411.054 kb on - strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.281 kb on + strand, within ABIE40_RS02095at 411.281 kb on + strand, within ABIE40_RS02095at 411.282 kb on - strand, within ABIE40_RS02095at 411.314 kb on + strand, within ABIE40_RS02095at 411.315 kb on - strand, within ABIE40_RS02095at 411.315 kb on - strand, within ABIE40_RS02095at 411.315 kb on - strand, within ABIE40_RS02095at 411.379 kb on - strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.415 kb on - strand, within ABIE40_RS02095at 411.473 kb on + strandat 411.473 kb on + strandat 411.473 kb on + strandat 411.474 kb on - strandat 411.474 kb on - strandat 411.474 kb on - strandat 411.492 kb on + strandat 411.502 kb on + strandat 411.503 kb on - strandat 411.503 kb on - strandat 411.503 kb on - strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.688 kb on - strandat 411.743 kb on - strandat 411.840 kb on + strand, within ABIE40_RS02100at 411.866 kb on - strand, within ABIE40_RS02100

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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409,264 + ABIE40_RS02085 0.24 -4.5
409,433 + ABIE40_RS02085 0.39 -2.7
409,437 + ABIE40_RS02085 0.40 -2.2
409,437 + ABIE40_RS02085 0.40 -2.5
409,437 + ABIE40_RS02085 0.40 -1.8
409,437 + ABIE40_RS02085 0.40 -3.3
409,437 + ABIE40_RS02085 0.40 -3.4
409,438 - ABIE40_RS02085 0.40 -3.5
409,438 - ABIE40_RS02085 0.40 -3.1
409,438 - ABIE40_RS02085 0.40 -1.3
409,460 - ABIE40_RS02085 0.42 -0.6
409,526 + ABIE40_RS02085 0.48 -2.8
409,526 + ABIE40_RS02085 0.48 -1.5
409,526 + ABIE40_RS02085 0.48 -2.8
409,527 - ABIE40_RS02085 0.48 -2.6
409,597 + ABIE40_RS02085 0.55 -5.0
409,598 - ABIE40_RS02085 0.55 -1.6
409,598 - ABIE40_RS02085 0.55 -3.0
409,598 - ABIE40_RS02085 0.55 -1.3
409,598 - ABIE40_RS02085 0.55 -2.3
409,598 - ABIE40_RS02085 0.55 -3.3
409,629 - ABIE40_RS02085 0.58 -1.9
409,629 - ABIE40_RS02085 0.58 -1.2
409,670 + ABIE40_RS02085 0.61 -1.8
409,670 + ABIE40_RS02085 0.61 -1.6
409,670 + ABIE40_RS02085 0.61 -2.1
409,670 + ABIE40_RS02085 0.61 -2.3
409,670 + ABIE40_RS02085 0.61 -0.1
409,684 + ABIE40_RS02085 0.63 -2.8
409,684 + ABIE40_RS02085 0.63 -2.0
409,684 + ABIE40_RS02085 0.63 -2.4
409,685 - ABIE40_RS02085 0.63 +0.3
409,685 - ABIE40_RS02085 0.63 -1.5
409,706 + ABIE40_RS02085 0.65 -3.6
409,706 + ABIE40_RS02085 0.65 -1.5
409,707 - ABIE40_RS02085 0.65 -4.3
409,707 - ABIE40_RS02085 0.65 -0.2
409,707 - ABIE40_RS02085 0.65 -1.2
409,707 - ABIE40_RS02085 0.65 -1.5
409,762 + ABIE40_RS02085 0.70 -2.0
409,762 + ABIE40_RS02085 0.70 -2.8
409,762 + ABIE40_RS02085 0.70 -1.5
409,762 + ABIE40_RS02085 0.70 -2.6
409,762 + ABIE40_RS02085 0.70 -3.4
409,763 - ABIE40_RS02085 0.70 -2.6
409,763 - ABIE40_RS02085 0.70 -2.2
409,763 - ABIE40_RS02085 0.70 -2.9
409,771 - ABIE40_RS02085 0.71 -1.1
409,778 + ABIE40_RS02085 0.71 +0.9
409,778 + ABIE40_RS02085 0.71 -4.3
409,778 + ABIE40_RS02085 0.71 -4.9
409,778 + ABIE40_RS02085 0.71 -3.3
409,778 + ABIE40_RS02085 0.71 -2.2
409,778 + ABIE40_RS02085 0.71 -1.6
409,779 - ABIE40_RS02085 0.71 -2.6
409,779 - ABIE40_RS02085 0.71 -1.4
409,779 - ABIE40_RS02085 0.71 -2.9
409,779 - ABIE40_RS02085 0.71 -3.7
409,779 - ABIE40_RS02085 0.71 -1.6
409,779 - ABIE40_RS02085 0.71 -2.6
409,779 - ABIE40_RS02085 0.71 -1.6
409,958 - ABIE40_RS02085 0.88 -0.1
410,015 + -3.7
410,015 + -1.2
410,015 + -3.1
410,015 + -3.6
410,015 + -2.2
410,015 + -1.1
410,015 + -1.1
410,015 + -1.5
410,016 - -1.6
410,016 - -1.7
410,016 - -1.9
410,016 - -3.0
410,016 - -1.0
410,016 - -4.1
410,016 - -2.7
410,016 - -3.3
410,131 + -2.4
410,131 + -2.7
410,132 - -1.6
410,173 + ABIE40_RS02090 0.11 -3.3
410,173 + ABIE40_RS02090 0.11 -2.3
410,173 + ABIE40_RS02090 0.11 -0.9
410,174 - ABIE40_RS02090 0.11 -1.7
410,174 - ABIE40_RS02090 0.11 -3.7
410,344 + ABIE40_RS02090 0.33 -1.6
410,344 + ABIE40_RS02090 0.33 -2.7
410,345 - ABIE40_RS02090 0.33 -3.1
410,797 + -1.3
410,797 + -2.6
410,798 - -2.8
410,798 - -1.8
410,798 - -2.1
410,879 - -1.6
410,981 + ABIE40_RS02095 0.18 -0.3
411,054 - ABIE40_RS02095 0.30 -1.3
411,054 - ABIE40_RS02095 0.30 -0.0
411,261 + ABIE40_RS02095 0.63 +0.1
411,261 + ABIE40_RS02095 0.63 +0.9
411,261 + ABIE40_RS02095 0.63 -0.3
411,261 + ABIE40_RS02095 0.63 -1.9
411,261 + ABIE40_RS02095 0.63 +0.1
411,261 + ABIE40_RS02095 0.63 -0.0
411,262 - ABIE40_RS02095 0.63 -0.2
411,262 - ABIE40_RS02095 0.63 -0.0
411,262 - ABIE40_RS02095 0.63 +0.7
411,262 - ABIE40_RS02095 0.63 +1.5
411,262 - ABIE40_RS02095 0.63 -0.3
411,281 + ABIE40_RS02095 0.66 -0.1
411,281 + ABIE40_RS02095 0.66 +0.5
411,282 - ABIE40_RS02095 0.66 +0.0
411,314 + ABIE40_RS02095 0.71 +0.2
411,315 - ABIE40_RS02095 0.71 +0.6
411,315 - ABIE40_RS02095 0.71 -1.9
411,315 - ABIE40_RS02095 0.71 +0.2
411,379 - ABIE40_RS02095 0.82 +0.3
411,414 + ABIE40_RS02095 0.87 -0.5
411,414 + ABIE40_RS02095 0.87 +0.5
411,414 + ABIE40_RS02095 0.87 +1.2
411,414 + ABIE40_RS02095 0.87 +0.0
411,415 - ABIE40_RS02095 0.87 +0.9
411,473 + +2.0
411,473 + -2.7
411,473 + -0.1
411,474 - +0.1
411,474 - +0.2
411,474 - +2.3
411,492 + -0.3
411,502 + +1.9
411,503 - -1.1
411,503 - +0.5
411,503 - -1.6
411,648 + +0.5
411,648 + +0.9
411,648 + +0.2
411,648 + +0.5
411,648 + -1.4
411,648 + -0.7
411,649 - +0.2
411,649 - +0.5
411,649 - -1.5
411,649 - -0.4
411,649 - -0.3
411,688 - +0.2
411,743 - -1.3
411,840 + ABIE40_RS02100 0.12 -0.7
411,866 - ABIE40_RS02100 0.14 -0.7

Or see this region's nucleotide sequence