Strain Fitness in Escherichia coli BW25113 around b3418
Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | D-Maltose (C) |
---|---|---|---|---|---|
remove | |||||
3,550,143 | - | malP | b3417 | 0.85 | -1.7 |
3,550,143 | - | malP | b3417 | 0.85 | -1.9 |
3,550,160 | + | malP | b3417 | 0.86 | -5.0 |
3,550,160 | + | malP | b3417 | 0.86 | -3.1 |
3,550,231 | + | malP | b3417 | 0.89 | -1.9 |
3,550,350 | + | -4.5 | |||
3,550,353 | - | -1.8 | |||
3,550,353 | - | -2.4 | |||
3,550,389 | - | -2.0 | |||
3,550,429 | - | -2.0 | |||
3,550,446 | - | -4.0 | |||
3,550,462 | + | -4.1 | |||
3,550,500 | - | -0.2 | |||
3,550,526 | + | -1.2 | |||
3,550,526 | + | -0.5 | |||
3,550,564 | + | -2.0 | |||
3,550,607 | + | -0.5 | |||
3,550,622 | + | +1.5 | |||
3,550,622 | + | +0.6 | |||
3,550,624 | + | +1.0 | |||
3,550,624 | + | +0.5 | |||
3,550,640 | - | -0.5 | |||
3,550,671 | + | +0.8 | |||
3,550,671 | + | +1.1 | |||
3,550,679 | - | -1.6 | |||
3,550,679 | - | -1.6 | |||
3,550,679 | - | -0.7 | |||
3,550,800 | + | +0.3 | |||
3,550,812 | - | +0.3 | |||
3,550,812 | - | +0.6 | |||
3,550,813 | - | -0.4 | |||
3,550,813 | - | +0.5 | |||
3,550,844 | + | +1.0 | |||
3,550,844 | + | -0.6 | |||
3,550,898 | + | +0.3 | |||
3,550,911 | - | +0.9 | |||
3,550,911 | - | -0.1 | |||
3,550,913 | + | +0.1 | |||
3,550,946 | + | +0.2 | |||
3,550,949 | + | +0.2 | |||
3,550,949 | + | -0.7 | |||
3,550,967 | + | +0.4 | |||
3,550,975 | - | -0.3 | |||
3,550,975 | - | -0.1 | |||
3,550,975 | - | -0.8 | |||
3,550,977 | + | +0.8 | |||
3,550,977 | + | +1.1 | |||
3,550,977 | + | +0.5 | |||
3,551,000 | - | -2.4 | |||
3,551,003 | + | +0.4 | |||
3,551,024 | - | -2.4 | |||
3,551,032 | - | -0.7 | |||
3,551,036 | + | -0.4 | |||
3,551,037 | + | +0.0 | |||
3,551,045 | - | +0.3 | |||
3,551,045 | - | -2.6 | |||
3,551,045 | - | -1.2 | |||
3,551,092 | + | +1.3 | |||
3,551,092 | + | +0.7 | |||
3,551,147 | + | -2.6 | |||
3,551,152 | + | -2.1 | |||
3,551,161 | + | -1.6 | |||
3,551,214 | + | -3.4 | |||
3,551,229 | + | -3.2 | |||
3,551,229 | + | -1.6 | |||
3,551,243 | - | -2.7 | |||
3,551,284 | + | -1.0 | |||
3,551,301 | - | -2.0 | |||
3,551,304 | + | -3.9 | |||
3,551,314 | + | -2.1 | |||
3,551,314 | + | -1.3 | |||
3,551,338 | + | -2.5 | |||
3,551,425 | - | malT | b3418 | 0.12 | -1.8 |
3,551,425 | - | malT | b3418 | 0.12 | -2.7 |
3,551,430 | - | malT | b3418 | 0.12 | -2.3 |
3,551,481 | - | malT | b3418 | 0.14 | -0.9 |
3,551,488 | + | malT | b3418 | 0.14 | -2.4 |
3,551,505 | - | malT | b3418 | 0.15 | -2.7 |
3,551,513 | - | malT | b3418 | 0.15 | -0.8 |
3,551,590 | + | malT | b3418 | 0.18 | -1.0 |
3,551,658 | + | malT | b3418 | 0.20 | -2.6 |
3,551,658 | + | malT | b3418 | 0.20 | -3.6 |
3,551,768 | + | malT | b3418 | 0.24 | -1.1 |
3,551,768 | + | malT | b3418 | 0.24 | -1.3 |
3,551,782 | - | malT | b3418 | 0.25 | -1.7 |
3,551,785 | + | malT | b3418 | 0.25 | -2.5 |
3,551,785 | + | malT | b3418 | 0.25 | -2.1 |
3,551,804 | + | malT | b3418 | 0.26 | -1.6 |
3,551,857 | + | malT | b3418 | 0.28 | -2.4 |
3,551,857 | + | malT | b3418 | 0.28 | -3.2 |
3,551,866 | - | malT | b3418 | 0.28 | -1.8 |
3,551,942 | + | malT | b3418 | 0.31 | +0.7 |
3,551,944 | + | malT | b3418 | 0.31 | -3.7 |
3,551,950 | - | malT | b3418 | 0.31 | -3.1 |
3,551,956 | + | malT | b3418 | 0.31 | -2.1 |
3,551,956 | + | malT | b3418 | 0.31 | -2.2 |
3,551,956 | + | malT | b3418 | 0.31 | -3.5 |
3,551,973 | - | malT | b3418 | 0.32 | -3.0 |
3,552,018 | - | +0.1 | |||
3,552,047 | - | malT | b3418 | 0.35 | -1.5 |
3,552,101 | + | malT | b3418 | 0.37 | -1.6 |
3,552,112 | - | malT | b3418 | 0.37 | -1.9 |
3,552,117 | - | malT | b3418 | 0.37 | -1.7 |
3,552,117 | - | malT | b3418 | 0.37 | -1.7 |
3,552,163 | + | malT | b3418 | 0.39 | -0.7 |
3,552,211 | - | malT | b3418 | 0.41 | -1.0 |
3,552,215 | + | malT | b3418 | 0.41 | -2.7 |
3,552,215 | + | malT | b3418 | 0.41 | -3.3 |
3,552,246 | + | malT | b3418 | 0.42 | -1.1 |
3,552,254 | - | malT | b3418 | 0.42 | -2.5 |
3,552,256 | + | malT | b3418 | 0.42 | -3.6 |
3,552,294 | + | malT | b3418 | 0.44 | -2.2 |
3,552,340 | + | malT | b3418 | 0.46 | -1.6 |
3,552,388 | + | malT | b3418 | 0.47 | -1.9 |
3,552,397 | + | malT | b3418 | 0.48 | -1.3 |
3,552,405 | - | -0.3 | |||
3,552,429 | + | malT | b3418 | 0.49 | -0.5 |
3,552,429 | + | malT | b3418 | 0.49 | -2.2 |
3,552,473 | + | malT | b3418 | 0.50 | -2.6 |
3,552,473 | + | malT | b3418 | 0.50 | +0.2 |
3,552,558 | - | malT | b3418 | 0.54 | -3.1 |
3,552,571 | - | malT | b3418 | 0.54 | -0.2 |
3,552,590 | + | malT | b3418 | 0.55 | -2.0 |
3,552,595 | + | malT | b3418 | 0.55 | -3.1 |
3,552,595 | + | malT | b3418 | 0.55 | -2.8 |
3,552,595 | + | malT | b3418 | 0.55 | -2.4 |
3,552,626 | - | malT | b3418 | 0.56 | -1.0 |
3,552,631 | - | malT | b3418 | 0.56 | -3.6 |
3,552,632 | + | malT | b3418 | 0.56 | -1.7 |
3,552,632 | + | malT | b3418 | 0.56 | -1.8 |
3,552,640 | - | malT | b3418 | 0.57 | -2.1 |
3,552,650 | + | malT | b3418 | 0.57 | -0.8 |
3,552,654 | - | malT | b3418 | 0.57 | -3.0 |
3,552,673 | + | malT | b3418 | 0.58 | -1.6 |
3,552,724 | + | malT | b3418 | 0.60 | -2.4 |
3,552,724 | + | malT | b3418 | 0.60 | -2.1 |
3,552,802 | + | malT | b3418 | 0.63 | -2.6 |
3,552,831 | - | malT | b3418 | 0.64 | -1.1 |
3,552,831 | - | malT | b3418 | 0.64 | -2.9 |
3,552,846 | - | malT | b3418 | 0.64 | -2.5 |
3,552,885 | + | malT | b3418 | 0.66 | -2.5 |
3,552,936 | - | malT | b3418 | 0.68 | -4.0 |
3,552,942 | + | malT | b3418 | 0.68 | -2.1 |
3,552,942 | + | malT | b3418 | 0.68 | +0.7 |
3,553,017 | + | malT | b3418 | 0.71 | -3.8 |
3,553,119 | - | malT | b3418 | 0.74 | -2.8 |
3,553,119 | - | malT | b3418 | 0.74 | -2.1 |
3,553,142 | - | malT | b3418 | 0.75 | -2.0 |
3,553,179 | + | malT | b3418 | 0.77 | -1.9 |
3,553,258 | - | malT | b3418 | 0.79 | -2.7 |
3,553,309 | + | malT | b3418 | 0.81 | -2.9 |
3,553,317 | + | malT | b3418 | 0.82 | -3.5 |
3,553,351 | + | malT | b3418 | 0.83 | -3.4 |
3,553,351 | + | malT | b3418 | 0.83 | -1.0 |
3,553,365 | - | malT | b3418 | 0.83 | -1.0 |
3,553,411 | + | malT | b3418 | 0.85 | -1.9 |
3,553,411 | + | malT | b3418 | 0.85 | -1.3 |
3,553,480 | - | malT | b3418 | 0.88 | -2.9 |
3,553,493 | + | malT | b3418 | 0.88 | -0.2 |
3,553,493 | + | malT | b3418 | 0.88 | -1.1 |
3,553,622 | + | -0.5 | |||
3,553,622 | + | -3.5 | |||
3,553,628 | + | -1.4 | |||
3,553,628 | + | -2.7 | |||
3,553,628 | + | -2.0 | |||
3,553,628 | + | -4.0 | |||
3,553,654 | + | -2.0 | |||
3,553,654 | + | -1.2 | |||
3,553,654 | + | -1.5 | |||
3,553,657 | - | -2.4 | |||
3,553,657 | - | -1.9 | |||
3,553,662 | - | -2.3 | |||
3,553,662 | - | -1.7 | |||
3,553,765 | + | -1.1 | |||
3,553,834 | + | +0.7 | |||
3,553,848 | - | -0.4 | |||
3,553,857 | + | -0.7 | |||
3,553,880 | - | -0.3 | |||
3,553,880 | - | -0.3 | |||
3,553,919 | + | -0.6 | |||
3,553,934 | + | +0.1 | |||
3,553,942 | - | -0.2 | |||
3,553,951 | + | +0.2 | |||
3,553,964 | - | rtcA | b4475 | 0.11 | +0.2 |
3,553,966 | - | rtcA | b4475 | 0.11 | -1.4 |
3,554,026 | - | rtcA | b4475 | 0.17 | -0.7 |
3,554,026 | - | rtcA | b4475 | 0.17 | +0.3 |
3,554,035 | - | rtcA | b4475 | 0.18 | +0.3 |
3,554,035 | - | rtcA | b4475 | 0.18 | -0.3 |
3,554,075 | - | rtcA | b4475 | 0.22 | +0.0 |
3,554,077 | - | rtcA | b4475 | 0.22 | +0.5 |
3,554,091 | + | rtcA | b4475 | 0.23 | -0.1 |
3,554,149 | - | rtcA | b4475 | 0.29 | -0.7 |
3,554,168 | + | rtcA | b4475 | 0.31 | +0.2 |
3,554,168 | + | rtcA | b4475 | 0.31 | -0.5 |
3,554,176 | - | rtcA | b4475 | 0.32 | -1.1 |
3,554,178 | + | rtcA | b4475 | 0.32 | +0.1 |
3,554,178 | + | rtcA | b4475 | 0.32 | +0.8 |
3,554,204 | - | rtcA | b4475 | 0.34 | +0.3 |
3,554,228 | - | rtcA | b4475 | 0.37 | +0.7 |
3,554,248 | + | rtcA | b4475 | 0.39 | -0.3 |
3,554,256 | + | rtcA | b4475 | 0.39 | +0.8 |
3,554,312 | + | rtcA | b4475 | 0.45 | -0.5 |
3,554,312 | + | rtcA | b4475 | 0.45 | -0.1 |
3,554,336 | + | rtcA | b4475 | 0.47 | -1.1 |
3,554,338 | + | rtcA | b4475 | 0.47 | +0.7 |
3,554,378 | - | rtcA | b4475 | 0.51 | +0.3 |
3,554,457 | + | rtcA | b4475 | 0.59 | -0.1 |
3,554,457 | + | rtcA | b4475 | 0.59 | +0.2 |
3,554,497 | + | rtcA | b4475 | 0.63 | -0.4 |
3,554,528 | + | rtcA | b4475 | 0.66 | +0.1 |
3,554,530 | + | rtcA | b4475 | 0.66 | +0.7 |
3,554,534 | - | rtcA | b4475 | 0.67 | -0.2 |
3,554,534 | - | rtcA | b4475 | 0.67 | -1.1 |
3,554,656 | + | rtcA | b4475 | 0.79 | +0.6 |
3,554,664 | - | rtcA | b4475 | 0.80 | -1.1 |
3,554,664 | - | rtcA | b4475 | 0.80 | -0.5 |
3,554,671 | + | rtcA | b4475 | 0.80 | -0.4 |
3,554,679 | - | rtcA | b4475 | 0.81 | -0.3 |
3,554,679 | - | rtcA | b4475 | 0.81 | +0.3 |
3,554,679 | - | rtcA | b4475 | 0.81 | +0.0 |
3,554,679 | - | rtcA | b4475 | 0.81 | -0.3 |
3,554,722 | - | rtcA | b4475 | 0.85 | -0.2 |
3,554,722 | - | rtcA | b4475 | 0.85 | +0.5 |
3,554,767 | - | rtcA | b4475 | 0.90 | -0.7 |
3,554,767 | - | rtcA | b4475 | 0.90 | -1.2 |
3,554,770 | + | +0.8 | |||
3,554,779 | - | -0.0 | |||
3,554,800 | + | +0.1 | |||
3,554,800 | + | -0.2 |
Or see this region's nucleotide sequence