Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_704 and PfGW456L13_705 are separated by 132 nucleotides PfGW456L13_705 and PfGW456L13_706 are separated by 89 nucleotides PfGW456L13_706 and PfGW456L13_707 are separated by 194 nucleotides PfGW456L13_707 and PfGW456L13_708 overlap by 4 nucleotides
PfGW456L13_704 - Cardiolipin synthetase (EC 2.7.8.-), at 802,546 to 803,985
_704
PfGW456L13_705 - FIG00953800: hypothetical protein, at 804,118 to 804,639
_705
PfGW456L13_706 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 804,729 to 805,616
_706
PfGW456L13_707 - Carbonic anhydrase, gamma class (EC 4.2.1.1), at 805,811 to 806,371
_707
PfGW456L13_708 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 806,368 to 807,243
_708
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 803.789 kb on + strand, within PfGW456L13_704 at 803.789 kb on + strand, within PfGW456L13_704 at 803.789 kb on + strand at 803.789 kb on + strand, within PfGW456L13_704 at 803.789 kb on + strand, within PfGW456L13_704 at 803.790 kb on - strand, within PfGW456L13_704 at 803.790 kb on - strand, within PfGW456L13_704 at 803.790 kb on - strand, within PfGW456L13_704 at 803.790 kb on - strand, within PfGW456L13_704 at 803.841 kb on - strand, within PfGW456L13_704 at 803.911 kb on + strand at 803.912 kb on - strand at 803.912 kb on - strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.952 kb on + strand at 803.953 kb on - strand at 803.953 kb on - strand at 803.953 kb on - strand at 803.953 kb on - strand at 803.953 kb on - strand at 803.953 kb on - strand at 803.953 kb on - strand at 803.954 kb on + strand at 803.964 kb on + strand at 803.964 kb on + strand at 803.964 kb on + strand at 803.965 kb on - strand at 803.965 kb on - strand at 803.965 kb on - strand at 803.978 kb on + strand at 803.978 kb on + strand at 803.978 kb on + strand at 804.018 kb on + strand at 804.019 kb on - strand at 804.019 kb on - strand at 804.019 kb on - strand at 804.019 kb on - strand at 804.019 kb on - strand at 804.048 kb on + strand at 804.052 kb on + strand at 804.052 kb on + strand at 804.053 kb on - strand at 804.088 kb on + strand at 804.089 kb on - strand at 804.099 kb on - strand at 804.099 kb on - strand at 804.099 kb on - strand at 804.112 kb on + strand at 804.246 kb on + strand, within PfGW456L13_705 at 804.624 kb on - strand at 804.637 kb on + strand at 804.637 kb on + strand at 804.637 kb on + strand at 804.674 kb on + strand at 804.674 kb on + strand at 804.674 kb on + strand at 804.675 kb on - strand at 804.756 kb on + strand at 804.756 kb on + strand at 804.898 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.976 kb on + strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 804.977 kb on - strand, within PfGW456L13_706 at 805.069 kb on + strand, within PfGW456L13_706 at 805.070 kb on - strand, within PfGW456L13_706 at 805.070 kb on - strand, within PfGW456L13_706 at 805.160 kb on - strand, within PfGW456L13_706 at 805.160 kb on - strand, within PfGW456L13_706 at 805.160 kb on - strand, within PfGW456L13_706 at 805.180 kb on + strand, within PfGW456L13_706 at 805.180 kb on + strand, within PfGW456L13_706 at 805.260 kb on + strand, within PfGW456L13_706 at 805.260 kb on + strand, within PfGW456L13_706 at 805.309 kb on + strand, within PfGW456L13_706 at 805.310 kb on - strand, within PfGW456L13_706 at 805.310 kb on - strand, within PfGW456L13_706 at 805.310 kb on - strand, within PfGW456L13_706 at 805.471 kb on + strand, within PfGW456L13_706 at 805.471 kb on + strand, within PfGW456L13_706 at 805.489 kb on - strand, within PfGW456L13_706 at 805.576 kb on + strand at 805.577 kb on - strand at 805.625 kb on + strand at 805.626 kb on - strand at 805.626 kb on - strand at 805.626 kb on - strand at 805.640 kb on - strand at 805.640 kb on - strand at 805.650 kb on - strand at 805.677 kb on + strand at 805.678 kb on - strand at 805.802 kb on + strand at 805.802 kb on + strand at 805.803 kb on - strand at 805.803 kb on - strand at 805.803 kb on - strand at 805.803 kb on - strand at 805.837 kb on - strand at 805.955 kb on + strand, within PfGW456L13_707 at 805.956 kb on - strand, within PfGW456L13_707 at 805.956 kb on - strand, within PfGW456L13_707 at 805.959 kb on + strand, within PfGW456L13_707 at 805.959 kb on + strand, within PfGW456L13_707 at 805.959 kb on + strand, within PfGW456L13_707 at 805.959 kb on + strand, within PfGW456L13_707 at 805.960 kb on - strand, within PfGW456L13_707 at 805.960 kb on - strand, within PfGW456L13_707 at 805.960 kb on - strand, within PfGW456L13_707 at 805.960 kb on - strand, within PfGW456L13_707 at 805.960 kb on - strand, within PfGW456L13_707 at 806.243 kb on + strand, within PfGW456L13_707 at 806.243 kb on + strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.244 kb on - strand, within PfGW456L13_707 at 806.319 kb on + strand at 806.319 kb on + strand at 806.320 kb on - strand at 806.390 kb on + strand at 806.390 kb on + strand at 806.390 kb on + strand at 806.390 kb on + strand at 806.391 kb on - strand at 806.391 kb on - strand at 806.391 kb on - strand at 806.391 kb on - strand at 806.391 kb on - strand at 806.391 kb on - strand at 806.391 kb on - strand at 806.465 kb on + strand, within PfGW456L13_708 at 806.465 kb on + strand, within PfGW456L13_708 at 806.466 kb on - strand, within PfGW456L13_708 at 806.555 kb on - strand, within PfGW456L13_708
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 803,789 + PfGW456L13_704 0.86 +0.1 803,789 + PfGW456L13_704 0.86 +0.5 803,789 + +0.1 803,789 + PfGW456L13_704 0.86 +0.8 803,789 + PfGW456L13_704 0.86 -1.5 803,790 - PfGW456L13_704 0.86 +0.5 803,790 - PfGW456L13_704 0.86 +1.1 803,790 - PfGW456L13_704 0.86 +0.4 803,790 - PfGW456L13_704 0.86 +0.8 803,841 - PfGW456L13_704 0.90 -0.5 803,911 + +0.5 803,912 - -2.7 803,912 - +0.7 803,952 + -1.3 803,952 + -0.0 803,952 + +1.6 803,952 + +0.2 803,952 + -2.2 803,952 + -0.9 803,952 + +0.5 803,952 + -0.7 803,952 + +0.8 803,953 - +0.0 803,953 - +1.7 803,953 - +1.0 803,953 - -2.7 803,953 - -3.7 803,953 - -2.9 803,953 - -0.7 803,954 + +0.8 803,964 + +1.7 803,964 + +1.9 803,964 + -3.0 803,965 - +1.2 803,965 - +0.8 803,965 - +1.4 803,978 + -1.9 803,978 + +1.1 803,978 + +0.0 804,018 + -3.8 804,019 - +0.5 804,019 - +1.2 804,019 - +1.3 804,019 - -0.0 804,019 - -0.5 804,048 + -2.2 804,052 + -0.1 804,052 + -1.9 804,053 - +0.1 804,088 + -0.3 804,089 - -0.3 804,099 - +1.3 804,099 - -0.8 804,099 - -2.8 804,112 + +0.2 804,246 + PfGW456L13_705 0.25 -3.4 804,624 - +1.2 804,637 + +1.5 804,637 + -1.1 804,637 + -1.5 804,674 + +0.4 804,674 + -2.0 804,674 + +0.5 804,675 - +0.7 804,756 + -0.5 804,756 + -1.7 804,898 + PfGW456L13_706 0.19 -0.3 804,976 + PfGW456L13_706 0.28 -0.0 804,976 + PfGW456L13_706 0.28 +0.1 804,976 + PfGW456L13_706 0.28 -0.1 804,976 + PfGW456L13_706 0.28 +0.7 804,976 + PfGW456L13_706 0.28 -2.0 804,976 + PfGW456L13_706 0.28 +0.8 804,976 + PfGW456L13_706 0.28 -0.5 804,976 + PfGW456L13_706 0.28 -0.5 804,977 - PfGW456L13_706 0.28 -0.6 804,977 - PfGW456L13_706 0.28 +0.1 804,977 - PfGW456L13_706 0.28 -0.9 804,977 - PfGW456L13_706 0.28 +0.4 804,977 - PfGW456L13_706 0.28 -1.0 804,977 - PfGW456L13_706 0.28 +1.2 804,977 - PfGW456L13_706 0.28 +0.7 804,977 - PfGW456L13_706 0.28 -2.0 805,069 + PfGW456L13_706 0.38 +0.4 805,070 - PfGW456L13_706 0.38 +1.1 805,070 - PfGW456L13_706 0.38 +0.5 805,160 - PfGW456L13_706 0.49 -0.0 805,160 - PfGW456L13_706 0.49 -0.3 805,160 - PfGW456L13_706 0.49 +0.3 805,180 + PfGW456L13_706 0.51 +0.8 805,180 + PfGW456L13_706 0.51 -2.4 805,260 + PfGW456L13_706 0.60 -0.1 805,260 + PfGW456L13_706 0.60 -0.4 805,309 + PfGW456L13_706 0.65 -1.1 805,310 - PfGW456L13_706 0.65 -0.4 805,310 - PfGW456L13_706 0.65 -0.6 805,310 - PfGW456L13_706 0.65 +1.2 805,471 + PfGW456L13_706 0.84 -3.0 805,471 + PfGW456L13_706 0.84 -0.5 805,489 - PfGW456L13_706 0.86 -0.7 805,576 + -0.8 805,577 - -0.2 805,625 + +0.3 805,626 - -3.6 805,626 - +0.4 805,626 - -0.3 805,640 - +0.1 805,640 - -2.6 805,650 - -0.0 805,677 + +0.8 805,678 - -0.6 805,802 + -0.3 805,802 + -0.9 805,803 - -2.7 805,803 - +1.4 805,803 - -3.7 805,803 - +1.2 805,837 - -0.9 805,955 + PfGW456L13_707 0.26 -0.9 805,956 - PfGW456L13_707 0.26 +0.2 805,956 - PfGW456L13_707 0.26 +0.9 805,959 + PfGW456L13_707 0.26 +0.3 805,959 + PfGW456L13_707 0.26 +0.8 805,959 + PfGW456L13_707 0.26 -0.0 805,959 + PfGW456L13_707 0.26 +1.3 805,960 - PfGW456L13_707 0.27 -1.1 805,960 - PfGW456L13_707 0.27 +1.1 805,960 - PfGW456L13_707 0.27 +0.4 805,960 - PfGW456L13_707 0.27 +1.3 805,960 - PfGW456L13_707 0.27 +1.5 806,243 + PfGW456L13_707 0.77 -1.1 806,243 + PfGW456L13_707 0.77 -0.1 806,244 - PfGW456L13_707 0.77 +0.4 806,244 - PfGW456L13_707 0.77 +0.1 806,244 - PfGW456L13_707 0.77 +0.1 806,244 - PfGW456L13_707 0.77 -2.7 806,244 - PfGW456L13_707 0.77 +1.0 806,244 - PfGW456L13_707 0.77 -0.8 806,244 - PfGW456L13_707 0.77 +0.8 806,244 - PfGW456L13_707 0.77 +0.6 806,319 + -0.8 806,319 + +0.5 806,320 - +1.5 806,390 + -2.0 806,390 + +0.1 806,390 + -0.7 806,390 + +0.7 806,391 - +0.4 806,391 - +0.6 806,391 - +0.2 806,391 - -0.5 806,391 - +1.7 806,391 - -0.7 806,391 - +0.9 806,465 + PfGW456L13_708 0.11 +0.5 806,465 + PfGW456L13_708 0.11 -0.6 806,466 - PfGW456L13_708 0.11 -0.4 806,555 - PfGW456L13_708 0.21 -0.4
Or see this region's nucleotide sequence