Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4933

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
5,510,239	-				+1.7
5,510,239	-				+0.7
5,510,379	+		PfGW456L13_4932	0.17	+1.3
5,510,379	+		PfGW456L13_4932	0.17	-1.3
5,510,379	+		PfGW456L13_4932	0.17	-1.5
5,510,379	+		PfGW456L13_4932	0.17	-1.5
5,510,379	+		PfGW456L13_4932	0.17	+1.5
5,510,379	+		PfGW456L13_4932	0.17	+0.7
5,510,380	-		PfGW456L13_4932	0.17	-0.2
5,510,380	-		PfGW456L13_4932	0.17	-2.0
5,510,380	-		PfGW456L13_4932	0.17	+1.6
5,510,380	-		PfGW456L13_4932	0.17	-0.0
5,510,380	-		PfGW456L13_4932	0.17	-0.0
5,510,380	-		PfGW456L13_4932	0.17	-1.0
5,510,380	-		PfGW456L13_4932	0.17	-0.0
5,510,380	-		PfGW456L13_4932	0.17	-2.8
5,510,388	+		PfGW456L13_4932	0.18	-0.4
5,510,388	+		PfGW456L13_4932	0.18	+1.1
5,510,388	+		PfGW456L13_4932	0.18	+0.4
5,510,388	+		PfGW456L13_4932	0.18	-1.0
5,510,388	+		PfGW456L13_4932	0.18	-0.0
5,510,389	-		PfGW456L13_4932	0.18	+1.1
5,510,389	-		PfGW456L13_4932	0.18	-0.5
5,510,418	+		PfGW456L13_4932	0.21	+1.1
5,510,419	-		PfGW456L13_4932	0.22	-0.5
5,510,481	+		PfGW456L13_4932	0.28	-1.0
5,510,481	+		PfGW456L13_4932	0.28	-0.8
5,510,481	+		PfGW456L13_4932	0.28	+0.3
5,510,481	+		PfGW456L13_4932	0.28	-0.5
5,510,481	+		PfGW456L13_4932	0.28	+1.6
5,510,482	-		PfGW456L13_4932	0.29	+0.8
5,510,482	-		PfGW456L13_4932	0.29	+0.8
5,510,553	+		PfGW456L13_4932	0.37	+1.0
5,510,553	+		PfGW456L13_4932	0.37	-1.5
5,510,583	+		PfGW456L13_4932	0.40	-1.0
5,510,584	-		PfGW456L13_4932	0.40	-1.5
5,510,584	-		PfGW456L13_4932	0.40	+3.0
5,510,584	-		PfGW456L13_4932	0.40	+0.5
5,510,584	-		PfGW456L13_4932	0.40	-1.2
5,510,584	-		PfGW456L13_4932	0.40	-0.1
5,510,664	+		PfGW456L13_4932	0.49	+0.5
5,510,737	-				+2.6
5,510,737	-		PfGW456L13_4932	0.57	-1.3
5,510,745	+				+1.9
5,510,745	+		PfGW456L13_4932	0.58	-0.0
5,510,745	+		PfGW456L13_4932	0.58	-2.6
5,510,746	-		PfGW456L13_4932	0.58	-0.1
5,510,757	+		PfGW456L13_4932	0.60	-0.1
5,510,757	+		PfGW456L13_4932	0.60	-1.4
5,510,757	+		PfGW456L13_4932	0.60	-0.3
5,510,757	+		PfGW456L13_4932	0.60	+1.3
5,510,757	+		PfGW456L13_4932	0.60	-0.9
5,510,758	-		PfGW456L13_4932	0.60	-1.0
5,510,758	-		PfGW456L13_4932	0.60	-0.4
5,510,811	+		PfGW456L13_4932	0.66	+0.3
5,510,811	+		PfGW456L13_4932	0.66	-0.1
5,510,811	+		PfGW456L13_4932	0.66	+0.3
5,510,812	-		PfGW456L13_4932	0.66	-0.1
5,510,812	-		PfGW456L13_4932	0.66	-1.7
5,510,812	-		PfGW456L13_4932	0.66	+0.8
5,510,812	-		PfGW456L13_4932	0.66	+1.3
5,510,851	-		PfGW456L13_4932	0.70	-2.9
5,510,851	-		PfGW456L13_4932	0.70	-1.3
5,511,098	-				-1.5
5,511,123	+				+0.1
5,511,123	+				-1.7
5,511,266	+		PfGW456L13_4933	0.41	-0.8
5,511,266	+		PfGW456L13_4933	0.41	+0.0
5,511,267	-		PfGW456L13_4933	0.41	-2.4
5,511,345	-		PfGW456L13_4933	0.64	-2.7
5,511,404	+		PfGW456L13_4933	0.81	-1.9
5,511,405	-		PfGW456L13_4933	0.81	-0.9
5,511,405	-		PfGW456L13_4933	0.81	-0.7
5,511,413	+		PfGW456L13_4933	0.84	+0.4
5,511,413	+		PfGW456L13_4933	0.84	-0.3
5,511,413	+		PfGW456L13_4933	0.84	+1.1
5,511,414	-		PfGW456L13_4933	0.84	-1.0
5,511,414	-		PfGW456L13_4933	0.84	-0.1
5,511,414	-		PfGW456L13_4933	0.84	-2.5
5,511,470	+				-0.3
5,511,470	+				-1.9
5,511,470	+				-0.7
5,511,470	+				-0.9
5,511,470	+				-0.1
5,511,470	+				-1.6
5,511,471	-				-3.0
5,511,471	-				-0.7
5,511,471	-				+1.3
5,511,471	-				-1.3
5,511,471	-				-0.3
5,511,474	+				-0.9
5,511,475	-				-0.1
5,511,489	-				+0.5
5,511,599	+		PfGW456L13_4934	0.24	-2.7
5,511,599	+		PfGW456L13_4934	0.24	-1.5
5,511,599	+		PfGW456L13_4934	0.24	-1.3
5,511,599	+		PfGW456L13_4934	0.24	-1.3
5,511,600	-		PfGW456L13_4934	0.24	-3.0
5,511,600	-		PfGW456L13_4934	0.24	+0.5
5,511,600	-		PfGW456L13_4934	0.24	-1.5
5,511,600	-		PfGW456L13_4934	0.24	-0.4
5,511,600	-		PfGW456L13_4934	0.24	-1.9
5,511,600	-		PfGW456L13_4934	0.24	-1.6
5,511,600	-		PfGW456L13_4934	0.24	-0.0
5,511,812	+		PfGW456L13_4934	0.63	-0.9
5,511,836	+		PfGW456L13_4934	0.67	+2.3
5,511,836	+		PfGW456L13_4934	0.67	-2.4
5,511,836	+		PfGW456L13_4934	0.67	-0.9
5,511,836	+		PfGW456L13_4934	0.67	-0.5
5,511,881	+		PfGW456L13_4934	0.75	-0.9
5,511,881	+		PfGW456L13_4934	0.75	-2.6
5,511,881	+		PfGW456L13_4934	0.75	-1.2
5,511,882	-		PfGW456L13_4934	0.76	-0.0
5,511,882	-		PfGW456L13_4934	0.76	+0.0
5,511,882	-		PfGW456L13_4934	0.76	-1.1
5,511,882	-		PfGW456L13_4934	0.76	-0.3
5,511,923	-		PfGW456L13_4934	0.83	-2.5
5,511,944	+		PfGW456L13_4934	0.87	-2.1
5,511,945	-		PfGW456L13_4934	0.87	+0.9
5,511,945	-		PfGW456L13_4934	0.87	-2.0
5,511,990	-				+1.6
5,512,005	-				+1.3
5,512,006	+				+1.0
5,512,006	+				-0.9
5,512,006	+				-2.0
5,512,007	-				+1.6
5,512,007	-				-1.9
5,512,078	+				+0.1
5,512,079	-				-0.1
5,512,094	+				+1.8
5,512,094	+				-0.7
5,512,209	+				-3.0
5,512,209	+				-1.1
5,512,211	+				+0.5
5,512,211	+				-1.2
5,512,211	+				+0.6
5,512,212	-				-2.8
5,512,212	-				-1.3
5,512,212	-				-0.4
5,512,212	-				+0.5
5,512,359	+		PfGW456L13_4935	0.13	-0.7
5,512,360	-		PfGW456L13_4935	0.13	-1.0
5,512,379	+		PfGW456L13_4935	0.14	+1.0
5,512,379	+		PfGW456L13_4935	0.14	-2.0
5,512,380	-		PfGW456L13_4935	0.14	+0.3
5,512,380	-		PfGW456L13_4935	0.14	+0.4
5,512,380	-		PfGW456L13_4935	0.14	-2.6