Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4368

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4367 and PfGW456L13_4368 overlap by 4 nucleotidesPfGW456L13_4368 and PfGW456L13_4369 overlap by 10 nucleotidesPfGW456L13_4369 and PfGW456L13_4370 overlap by 1 nucleotides PfGW456L13_4367 - Pseudaminic acid cytidylyltransferase (EC 2.7.7.43), at 4,877,233 to 4,878,738 _4367 PfGW456L13_4368 - N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43), at 4,878,735 to 4,879,448 _4368 PfGW456L13_4369 - FIG00852372: hypothetical protein, at 4,879,439 to 4,880,059 _4369 PfGW456L13_4370 - Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase, at 4,880,059 to 4,881,249 _4370 Position (kb) 4878 4879 4880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4877.997 kb on - strand, within PfGW456L13_4367at 4878.075 kb on + strand, within PfGW456L13_4367at 4878.075 kb on + strand, within PfGW456L13_4367at 4878.293 kb on + strand, within PfGW456L13_4367at 4878.294 kb on - strand, within PfGW456L13_4367at 4878.344 kb on + strand, within PfGW456L13_4367at 4878.345 kb on - strand, within PfGW456L13_4367at 4878.345 kb on - strand, within PfGW456L13_4367at 4878.345 kb on - strand, within PfGW456L13_4367at 4878.345 kb on - strand, within PfGW456L13_4367at 4878.345 kb on - strand, within PfGW456L13_4367at 4878.428 kb on + strand, within PfGW456L13_4367at 4878.548 kb on + strand, within PfGW456L13_4367at 4878.769 kb on + strandat 4878.769 kb on + strandat 4878.769 kb on + strandat 4878.769 kb on + strandat 4878.769 kb on + strandat 4878.770 kb on - strandat 4878.770 kb on - strandat 4878.770 kb on - strandat 4878.770 kb on - strandat 4878.775 kb on + strandat 4878.775 kb on + strandat 4878.776 kb on - strandat 4878.859 kb on + strand, within PfGW456L13_4368at 4878.860 kb on - strand, within PfGW456L13_4368at 4878.860 kb on - strand, within PfGW456L13_4368at 4878.860 kb on - strand, within PfGW456L13_4368at 4878.860 kb on - strand, within PfGW456L13_4368at 4878.860 kb on - strand, within PfGW456L13_4368at 4878.860 kb on - strand, within PfGW456L13_4368at 4878.860 kb on - strand, within PfGW456L13_4368at 4878.901 kb on + strand, within PfGW456L13_4368at 4878.902 kb on - strand, within PfGW456L13_4368at 4878.902 kb on - strand, within PfGW456L13_4368at 4878.902 kb on - strand, within PfGW456L13_4368at 4878.968 kb on - strand, within PfGW456L13_4368at 4879.126 kb on + strand, within PfGW456L13_4368at 4879.126 kb on + strand, within PfGW456L13_4368at 4879.126 kb on + strand, within PfGW456L13_4368at 4879.127 kb on - strand, within PfGW456L13_4368at 4879.127 kb on - strand, within PfGW456L13_4368at 4879.130 kb on + strand, within PfGW456L13_4368at 4879.130 kb on + strand, within PfGW456L13_4368at 4879.131 kb on - strand, within PfGW456L13_4368at 4879.131 kb on - strand, within PfGW456L13_4368at 4879.395 kb on + strandat 4879.516 kb on - strand, within PfGW456L13_4369at 4879.626 kb on + strand, within PfGW456L13_4369at 4879.626 kb on + strand, within PfGW456L13_4369at 4879.627 kb on - strand, within PfGW456L13_4369at 4879.627 kb on - strand, within PfGW456L13_4369at 4879.627 kb on - strand, within PfGW456L13_4369at 4879.627 kb on - strand, within PfGW456L13_4369at 4879.629 kb on + strand, within PfGW456L13_4369at 4879.643 kb on + strand, within PfGW456L13_4369at 4879.643 kb on + strand, within PfGW456L13_4369at 4879.643 kb on + strandat 4879.643 kb on + strand, within PfGW456L13_4369at 4879.643 kb on + strand, within PfGW456L13_4369at 4879.643 kb on + strand, within PfGW456L13_4369at 4879.644 kb on - strand, within PfGW456L13_4369at 4879.644 kb on - strand, within PfGW456L13_4369at 4879.644 kb on - strandat 4879.644 kb on - strand, within PfGW456L13_4369at 4879.644 kb on - strand, within PfGW456L13_4369at 4879.644 kb on - strand, within PfGW456L13_4369at 4879.644 kb on - strand, within PfGW456L13_4369at 4879.647 kb on + strand, within PfGW456L13_4369at 4879.647 kb on + strand, within PfGW456L13_4369at 4879.648 kb on - strand, within PfGW456L13_4369at 4879.648 kb on - strand, within PfGW456L13_4369at 4879.648 kb on - strand, within PfGW456L13_4369at 4879.665 kb on + strand, within PfGW456L13_4369at 4879.665 kb on + strand, within PfGW456L13_4369at 4879.665 kb on + strand, within PfGW456L13_4369at 4879.665 kb on + strand, within PfGW456L13_4369at 4879.665 kb on + strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.666 kb on - strand, within PfGW456L13_4369at 4879.677 kb on + strand, within PfGW456L13_4369at 4879.678 kb on - strand, within PfGW456L13_4369at 4880.005 kb on - strandat 4880.005 kb on - strandat 4880.005 kb on - strandat 4880.005 kb on - strandat 4880.005 kb on - strandat 4880.093 kb on - strandat 4880.126 kb on + strandat 4880.126 kb on + strandat 4880.126 kb on + strandat 4880.126 kb on + strandat 4880.126 kb on + strandat 4880.127 kb on - strandat 4880.127 kb on - strandat 4880.127 kb on - strandat 4880.127 kb on - strandat 4880.156 kb on + strandat 4880.156 kb on + strandat 4880.157 kb on - strandat 4880.158 kb on + strandat 4880.158 kb on + strandat 4880.159 kb on - strandat 4880.159 kb on - strandat 4880.159 kb on - strandat 4880.159 kb on - strandat 4880.183 kb on + strand, within PfGW456L13_4370at 4880.184 kb on - strand, within PfGW456L13_4370at 4880.184 kb on - strand, within PfGW456L13_4370at 4880.184 kb on - strand, within PfGW456L13_4370at 4880.186 kb on + strand, within PfGW456L13_4370at 4880.187 kb on - strand, within PfGW456L13_4370at 4880.224 kb on + strand, within PfGW456L13_4370at 4880.224 kb on + strand, within PfGW456L13_4370at 4880.224 kb on + strand, within PfGW456L13_4370at 4880.225 kb on - strand, within PfGW456L13_4370at 4880.225 kb on - strand, within PfGW456L13_4370at 4880.225 kb on - strand, within PfGW456L13_4370at 4880.234 kb on + strand, within PfGW456L13_4370at 4880.234 kb on + strand, within PfGW456L13_4370at 4880.235 kb on - strand, within PfGW456L13_4370at 4880.235 kb on - strand, within PfGW456L13_4370at 4880.235 kb on - strand, within PfGW456L13_4370at 4880.235 kb on - strand, within PfGW456L13_4370at 4880.237 kb on + strand, within PfGW456L13_4370at 4880.237 kb on + strand, within PfGW456L13_4370at 4880.237 kb on + strand, within PfGW456L13_4370at 4880.237 kb on + strand, within PfGW456L13_4370at 4880.237 kb on + strand, within PfGW456L13_4370at 4880.237 kb on + strand, within PfGW456L13_4370at 4880.238 kb on - strand, within PfGW456L13_4370at 4880.238 kb on - strand, within PfGW456L13_4370at 4880.238 kb on - strand, within PfGW456L13_4370at 4880.238 kb on - strand, within PfGW456L13_4370at 4880.262 kb on - strand, within PfGW456L13_4370at 4880.262 kb on - strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strandat 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.354 kb on + strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.355 kb on - strand, within PfGW456L13_4370at 4880.411 kb on + strand, within PfGW456L13_4370at 4880.411 kb on + strand, within PfGW456L13_4370at 4880.412 kb on - strand, within PfGW456L13_4370at 4880.412 kb on - strand, within PfGW456L13_4370at 4880.412 kb on - strand, within PfGW456L13_4370at 4880.412 kb on - strand, within PfGW456L13_4370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
4,877,997 - PfGW456L13_4367 0.51 +0.5
4,878,075 + PfGW456L13_4367 0.56 -0.6
4,878,075 + PfGW456L13_4367 0.56 -1.6
4,878,293 + PfGW456L13_4367 0.70 -2.8
4,878,294 - PfGW456L13_4367 0.70 -1.0
4,878,344 + PfGW456L13_4367 0.74 +1.0
4,878,345 - PfGW456L13_4367 0.74 +0.3
4,878,345 - PfGW456L13_4367 0.74 +1.7
4,878,345 - PfGW456L13_4367 0.74 +1.0
4,878,345 - PfGW456L13_4367 0.74 +0.6
4,878,345 - PfGW456L13_4367 0.74 -0.0
4,878,428 + PfGW456L13_4367 0.79 -2.5
4,878,548 + PfGW456L13_4367 0.87 -2.5
4,878,769 + -1.1
4,878,769 + -2.3
4,878,769 + +2.6
4,878,769 + +0.3
4,878,769 + -1.2
4,878,770 - +0.8
4,878,770 - -2.1
4,878,770 - -0.9
4,878,770 - -1.3
4,878,775 + -0.7
4,878,775 + +0.5
4,878,776 - -0.8
4,878,859 + PfGW456L13_4368 0.17 -0.4
4,878,860 - PfGW456L13_4368 0.18 -0.8
4,878,860 - PfGW456L13_4368 0.18 +0.6
4,878,860 - PfGW456L13_4368 0.18 -2.0
4,878,860 - PfGW456L13_4368 0.18 +0.4
4,878,860 - PfGW456L13_4368 0.18 -0.7
4,878,860 - PfGW456L13_4368 0.18 +2.1
4,878,860 - PfGW456L13_4368 0.18 +1.5
4,878,901 + PfGW456L13_4368 0.23 -1.4
4,878,902 - PfGW456L13_4368 0.23 +1.7
4,878,902 - PfGW456L13_4368 0.23 -1.3
4,878,902 - PfGW456L13_4368 0.23 -0.4
4,878,968 - PfGW456L13_4368 0.33 -0.0
4,879,126 + PfGW456L13_4368 0.55 -1.8
4,879,126 + PfGW456L13_4368 0.55 +1.1
4,879,126 + PfGW456L13_4368 0.55 -1.3
4,879,127 - PfGW456L13_4368 0.55 -0.0
4,879,127 - PfGW456L13_4368 0.55 -3.4
4,879,130 + PfGW456L13_4368 0.55 +0.8
4,879,130 + PfGW456L13_4368 0.55 -0.2
4,879,131 - PfGW456L13_4368 0.55 +0.2
4,879,131 - PfGW456L13_4368 0.55 +0.2
4,879,395 + +1.9
4,879,516 - PfGW456L13_4369 0.12 -1.0
4,879,626 + PfGW456L13_4369 0.30 +1.1
4,879,626 + PfGW456L13_4369 0.30 +0.3
4,879,627 - PfGW456L13_4369 0.30 +0.6
4,879,627 - PfGW456L13_4369 0.30 +0.4
4,879,627 - PfGW456L13_4369 0.30 -1.9
4,879,627 - PfGW456L13_4369 0.30 +2.0
4,879,629 + PfGW456L13_4369 0.31 +1.9
4,879,643 + PfGW456L13_4369 0.33 -3.0
4,879,643 + PfGW456L13_4369 0.33 -1.4
4,879,643 + +1.0
4,879,643 + PfGW456L13_4369 0.33 -0.5
4,879,643 + PfGW456L13_4369 0.33 -0.0
4,879,643 + PfGW456L13_4369 0.33 +0.3
4,879,644 - PfGW456L13_4369 0.33 +0.1
4,879,644 - PfGW456L13_4369 0.33 +1.5
4,879,644 - +4.2
4,879,644 - PfGW456L13_4369 0.33 -0.4
4,879,644 - PfGW456L13_4369 0.33 -0.4
4,879,644 - PfGW456L13_4369 0.33 +0.2
4,879,644 - PfGW456L13_4369 0.33 +0.7
4,879,647 + PfGW456L13_4369 0.33 +3.0
4,879,647 + PfGW456L13_4369 0.33 +1.5
4,879,648 - PfGW456L13_4369 0.34 -0.2
4,879,648 - PfGW456L13_4369 0.34 +1.4
4,879,648 - PfGW456L13_4369 0.34 +0.1
4,879,665 + PfGW456L13_4369 0.36 -2.0
4,879,665 + PfGW456L13_4369 0.36 +0.4
4,879,665 + PfGW456L13_4369 0.36 -1.6
4,879,665 + PfGW456L13_4369 0.36 +0.4
4,879,665 + PfGW456L13_4369 0.36 -1.1
4,879,666 - PfGW456L13_4369 0.37 -1.5
4,879,666 - PfGW456L13_4369 0.37 -0.1
4,879,666 - PfGW456L13_4369 0.37 -1.1
4,879,666 - PfGW456L13_4369 0.37 -2.7
4,879,666 - PfGW456L13_4369 0.37 -0.4
4,879,666 - PfGW456L13_4369 0.37 +1.0
4,879,666 - PfGW456L13_4369 0.37 +2.4
4,879,666 - PfGW456L13_4369 0.37 +0.3
4,879,677 + PfGW456L13_4369 0.38 +0.0
4,879,678 - PfGW456L13_4369 0.38 -0.1
4,880,005 - +0.7
4,880,005 - +0.2
4,880,005 - -0.0
4,880,005 - -3.5
4,880,005 - -0.0
4,880,093 - +0.3
4,880,126 + -2.0
4,880,126 + -0.2
4,880,126 + +0.3
4,880,126 + +1.3
4,880,126 + -0.5
4,880,127 - -0.8
4,880,127 - +0.8
4,880,127 - -0.7
4,880,127 - -0.1
4,880,156 + +1.4
4,880,156 + +0.8
4,880,157 - -3.2
4,880,158 + +0.3
4,880,158 + -0.8
4,880,159 - -0.1
4,880,159 - +0.7
4,880,159 - -0.4
4,880,159 - -0.5
4,880,183 + PfGW456L13_4370 0.10 +0.5
4,880,184 - PfGW456L13_4370 0.10 +1.4
4,880,184 - PfGW456L13_4370 0.10 -3.6
4,880,184 - PfGW456L13_4370 0.10 +1.2
4,880,186 + PfGW456L13_4370 0.11 +0.6
4,880,187 - PfGW456L13_4370 0.11 +1.9
4,880,224 + PfGW456L13_4370 0.14 +1.1
4,880,224 + PfGW456L13_4370 0.14 +0.8
4,880,224 + PfGW456L13_4370 0.14 +0.4
4,880,225 - PfGW456L13_4370 0.14 -0.2
4,880,225 - PfGW456L13_4370 0.14 +0.5
4,880,225 - PfGW456L13_4370 0.14 +1.0
4,880,234 + PfGW456L13_4370 0.15 +1.8
4,880,234 + PfGW456L13_4370 0.15 +1.1
4,880,235 - PfGW456L13_4370 0.15 +1.9
4,880,235 - PfGW456L13_4370 0.15 -0.0
4,880,235 - PfGW456L13_4370 0.15 -0.3
4,880,235 - PfGW456L13_4370 0.15 -0.7
4,880,237 + PfGW456L13_4370 0.15 +0.5
4,880,237 + PfGW456L13_4370 0.15 -0.0
4,880,237 + PfGW456L13_4370 0.15 -0.6
4,880,237 + PfGW456L13_4370 0.15 +0.3
4,880,237 + PfGW456L13_4370 0.15 +2.2
4,880,237 + PfGW456L13_4370 0.15 +0.2
4,880,238 - PfGW456L13_4370 0.15 -1.1
4,880,238 - PfGW456L13_4370 0.15 +0.5
4,880,238 - PfGW456L13_4370 0.15 +0.4
4,880,238 - PfGW456L13_4370 0.15 +0.1
4,880,262 - PfGW456L13_4370 0.17 -3.5
4,880,262 - PfGW456L13_4370 0.17 +0.6
4,880,354 + PfGW456L13_4370 0.25 +0.1
4,880,354 + PfGW456L13_4370 0.25 +0.3
4,880,354 + PfGW456L13_4370 0.25 -1.0
4,880,354 + PfGW456L13_4370 0.25 -0.2
4,880,354 + PfGW456L13_4370 0.25 +0.1
4,880,354 + PfGW456L13_4370 0.25 -1.7
4,880,354 + PfGW456L13_4370 0.25 +0.4
4,880,354 + PfGW456L13_4370 0.25 -0.3
4,880,354 + PfGW456L13_4370 0.25 +1.2
4,880,354 + +0.6
4,880,354 + PfGW456L13_4370 0.25 -2.8
4,880,354 + PfGW456L13_4370 0.25 +1.1
4,880,354 + PfGW456L13_4370 0.25 -0.6
4,880,355 - PfGW456L13_4370 0.25 -0.3
4,880,355 - PfGW456L13_4370 0.25 -0.3
4,880,355 - PfGW456L13_4370 0.25 +1.0
4,880,355 - PfGW456L13_4370 0.25 -0.0
4,880,355 - PfGW456L13_4370 0.25 +1.1
4,880,355 - PfGW456L13_4370 0.25 +0.4
4,880,355 - PfGW456L13_4370 0.25 -2.0
4,880,355 - PfGW456L13_4370 0.25 -2.2
4,880,355 - PfGW456L13_4370 0.25 -1.6
4,880,411 + PfGW456L13_4370 0.30 -0.5
4,880,411 + PfGW456L13_4370 0.30 +0.4
4,880,412 - PfGW456L13_4370 0.30 -0.0
4,880,412 - PfGW456L13_4370 0.30 +0.6
4,880,412 - PfGW456L13_4370 0.30 -1.3
4,880,412 - PfGW456L13_4370 0.30 -1.6

Or see this region's nucleotide sequence