Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_405 and PfGW456L13_406 are separated by 127 nucleotides PfGW456L13_406 and PfGW456L13_407 are separated by 128 nucleotides PfGW456L13_407 and PfGW456L13_408 are separated by 92 nucleotides PfGW456L13_408 and PfGW456L13_409 overlap by 4 nucleotides
PfGW456L13_405 - FIG001957: putative hydrolase, at 467,027 to 467,689
_405
PfGW456L13_406 - FIG00954962: hypothetical protein, at 467,817 to 468,257
_406
PfGW456L13_407 - Hydrogen peroxide-inducible genes activator, at 468,386 to 469,273
_407
PfGW456L13_408 - Formate dehydrogenase chain D (EC 1.2.1.2), at 469,366 to 470,205
_408
PfGW456L13_409 - Putative formate dehydrogenase oxidoreductase protein, at 470,202 to 472,550
_409
Position (kb) 468
469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 467.426 kb on + strand, within PfGW456L13_405 at 467.426 kb on + strand, within PfGW456L13_405 at 467.456 kb on + strand, within PfGW456L13_405 at 467.456 kb on + strand, within PfGW456L13_405 at 467.456 kb on + strand, within PfGW456L13_405 at 467.457 kb on - strand, within PfGW456L13_405 at 467.687 kb on + strand at 467.818 kb on + strand at 467.818 kb on + strand at 467.818 kb on + strand at 467.819 kb on - strand at 467.819 kb on - strand at 467.819 kb on - strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.902 kb on + strand, within PfGW456L13_406 at 467.902 kb on + strand, within PfGW456L13_406 at 467.902 kb on + strand, within PfGW456L13_406 at 467.902 kb on + strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.920 kb on + strand, within PfGW456L13_406 at 467.921 kb on - strand, within PfGW456L13_406 at 468.299 kb on + strand at 468.299 kb on + strand at 468.299 kb on + strand at 468.299 kb on + strand at 468.300 kb on - strand at 468.300 kb on - strand at 468.300 kb on - strand at 468.317 kb on + strand at 468.317 kb on + strand at 468.317 kb on + strand at 468.318 kb on - strand at 468.352 kb on + strand at 468.352 kb on + strand at 468.352 kb on + strand at 468.597 kb on + strand, within PfGW456L13_407 at 468.598 kb on - strand, within PfGW456L13_407 at 468.608 kb on + strand, within PfGW456L13_407 at 468.608 kb on + strand, within PfGW456L13_407 at 468.609 kb on - strand, within PfGW456L13_407 at 468.675 kb on + strand, within PfGW456L13_407 at 468.675 kb on + strand, within PfGW456L13_407 at 468.676 kb on - strand, within PfGW456L13_407 at 468.822 kb on - strand, within PfGW456L13_407 at 468.822 kb on - strand, within PfGW456L13_407 at 468.890 kb on + strand, within PfGW456L13_407 at 468.890 kb on + strand, within PfGW456L13_407 at 468.890 kb on + strand, within PfGW456L13_407 at 468.891 kb on - strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.068 kb on + strand, within PfGW456L13_407 at 469.069 kb on - strand, within PfGW456L13_407 at 469.247 kb on + strand at 469.247 kb on + strand at 469.248 kb on - strand at 469.338 kb on + strand at 469.339 kb on - strand at 469.339 kb on - strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.443 kb on + strand at 469.443 kb on + strand at 469.443 kb on + strand at 469.443 kb on + strand at 469.444 kb on - strand at 469.457 kb on - strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.654 kb on + strand, within PfGW456L13_408 at 469.784 kb on + strand, within PfGW456L13_408 at 469.784 kb on + strand, within PfGW456L13_408 at 469.784 kb on + strand, within PfGW456L13_408 at 469.785 kb on - strand, within PfGW456L13_408 at 469.785 kb on - strand, within PfGW456L13_408 at 470.054 kb on + strand, within PfGW456L13_408 at 470.055 kb on - strand, within PfGW456L13_408 at 470.055 kb on - strand, within PfGW456L13_408 at 470.176 kb on + strand at 470.177 kb on - strand at 470.177 kb on - strand at 470.253 kb on + strand at 470.253 kb on + strand at 470.253 kb on + strand at 470.254 kb on - strand at 470.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 467,426 + PfGW456L13_405 0.60 +0.5 467,426 + PfGW456L13_405 0.60 -0.7 467,456 + PfGW456L13_405 0.65 -0.0 467,456 + PfGW456L13_405 0.65 +0.5 467,456 + PfGW456L13_405 0.65 +0.8 467,457 - PfGW456L13_405 0.65 -2.9 467,687 + -1.2 467,818 + -3.0 467,818 + -1.6 467,818 + +0.2 467,819 - -1.5 467,819 - -0.2 467,819 - +1.9 467,848 + +1.5 467,848 + -0.4 467,849 - -1.6 467,849 - +0.4 467,902 + PfGW456L13_406 0.19 -2.0 467,902 + PfGW456L13_406 0.19 -2.4 467,902 + PfGW456L13_406 0.19 -1.6 467,902 + PfGW456L13_406 0.19 +0.2 467,903 - PfGW456L13_406 0.20 -0.7 467,903 - PfGW456L13_406 0.20 +0.2 467,903 - PfGW456L13_406 0.20 +0.8 467,903 - PfGW456L13_406 0.20 +0.7 467,903 - PfGW456L13_406 0.20 -0.8 467,920 + PfGW456L13_406 0.23 -1.1 467,921 - PfGW456L13_406 0.24 -0.6 468,299 + -2.3 468,299 + +0.8 468,299 + -0.4 468,299 + -1.0 468,300 - +2.5 468,300 - +0.9 468,300 - -0.5 468,317 + -2.4 468,317 + +0.2 468,317 + +0.6 468,318 - +0.5 468,352 + -2.6 468,352 + -0.7 468,352 + +0.7 468,597 + PfGW456L13_407 0.24 +0.8 468,598 - PfGW456L13_407 0.24 -1.2 468,608 + PfGW456L13_407 0.25 +0.5 468,608 + PfGW456L13_407 0.25 +0.2 468,609 - PfGW456L13_407 0.25 +1.1 468,675 + PfGW456L13_407 0.33 -0.7 468,675 + PfGW456L13_407 0.33 -2.6 468,676 - PfGW456L13_407 0.33 +0.2 468,822 - PfGW456L13_407 0.49 -0.4 468,822 - PfGW456L13_407 0.49 -0.9 468,890 + PfGW456L13_407 0.57 -0.0 468,890 + PfGW456L13_407 0.57 +0.4 468,890 + PfGW456L13_407 0.57 -1.2 468,891 - PfGW456L13_407 0.57 -0.2 469,003 + PfGW456L13_407 0.69 -0.9 469,003 + PfGW456L13_407 0.69 +0.7 469,003 + PfGW456L13_407 0.69 -1.7 469,003 + PfGW456L13_407 0.69 -3.7 469,004 - PfGW456L13_407 0.70 -0.3 469,004 - PfGW456L13_407 0.70 -2.3 469,004 - PfGW456L13_407 0.70 -3.2 469,004 - PfGW456L13_407 0.70 -1.0 469,004 - PfGW456L13_407 0.70 -2.3 469,068 + PfGW456L13_407 0.77 -3.4 469,069 - PfGW456L13_407 0.77 +0.2 469,247 + +0.0 469,247 + +1.0 469,248 - +0.7 469,338 + +1.8 469,339 - -0.3 469,339 - +1.5 469,435 + -1.4 469,435 + +1.7 469,435 + -0.7 469,435 + +0.4 469,435 + +1.5 469,435 + -1.3 469,436 - -2.5 469,436 - -0.2 469,436 - +0.1 469,436 - +0.6 469,436 - +0.5 469,436 - +1.1 469,436 - +0.8 469,436 - +0.2 469,436 - +0.8 469,441 + -0.7 469,441 + -0.8 469,441 + +1.0 469,441 + -1.4 469,441 + +1.5 469,441 + +0.5 469,441 + +1.3 469,441 + +0.2 469,441 + -0.6 469,442 - -1.6 469,442 - +0.0 469,442 - +0.2 469,442 - +0.6 469,442 - +0.5 469,442 - -2.1 469,442 - +0.4 469,443 + -0.6 469,443 + -2.2 469,443 + -0.3 469,443 + -1.3 469,444 - +0.2 469,457 - PfGW456L13_408 0.11 +0.5 469,618 + PfGW456L13_408 0.30 -2.0 469,618 + PfGW456L13_408 0.30 +0.3 469,618 + PfGW456L13_408 0.30 +0.6 469,618 + PfGW456L13_408 0.30 +1.2 469,618 + PfGW456L13_408 0.30 +0.1 469,618 + PfGW456L13_408 0.30 -1.1 469,618 + PfGW456L13_408 0.30 -0.8 469,618 + PfGW456L13_408 0.30 -0.0 469,619 - PfGW456L13_408 0.30 -0.8 469,619 - PfGW456L13_408 0.30 +1.8 469,619 - PfGW456L13_408 0.30 +0.5 469,619 - PfGW456L13_408 0.30 +0.6 469,619 - -0.5 469,619 - PfGW456L13_408 0.30 +1.5 469,619 - PfGW456L13_408 0.30 -0.7 469,619 - PfGW456L13_408 0.30 -0.2 469,619 - PfGW456L13_408 0.30 +0.1 469,654 + PfGW456L13_408 0.34 -0.2 469,784 + PfGW456L13_408 0.50 -2.5 469,784 + PfGW456L13_408 0.50 +2.2 469,784 + PfGW456L13_408 0.50 +0.5 469,785 - PfGW456L13_408 0.50 -0.5 469,785 - PfGW456L13_408 0.50 +0.4 470,054 + PfGW456L13_408 0.82 -1.0 470,055 - PfGW456L13_408 0.82 +0.9 470,055 - PfGW456L13_408 0.82 +1.3 470,176 + +0.1 470,177 - -0.1 470,177 - +0.7 470,253 + +2.3 470,253 + -0.9 470,253 + -1.0 470,254 - -3.2 470,254 - -1.3
Or see this region's nucleotide sequence