Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1960

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1959 and PfGW456L13_1960 are separated by 292 nucleotidesPfGW456L13_1960 and PfGW456L13_1961 are separated by 527 nucleotides PfGW456L13_1959 - DNA-cytosine methyltransferase (EC 2.1.1.37), at 2,156,264 to 2,157,823 _1959 PfGW456L13_1960 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 2,158,116 to 2,159,363 _1960 PfGW456L13_1961 - Conserved domain protein precursor, at 2,159,891 to 2,160,244 _1961 Position (kb) 2158 2159 2160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2158.019 kb on - strandat 2159.413 kb on - strandat 2159.413 kb on - strandat 2159.454 kb on - strandat 2159.479 kb on - strandat 2159.479 kb on - strandat 2159.479 kb on - strandat 2159.479 kb on - strandat 2159.479 kb on - strandat 2159.479 kb on - strandat 2159.481 kb on - strandat 2159.481 kb on - strandat 2159.481 kb on - strandat 2159.481 kb on - strandat 2159.481 kb on - strandat 2159.481 kb on - strandat 2159.594 kb on - strandat 2159.594 kb on - strandat 2159.620 kb on - strandat 2159.620 kb on - strandat 2159.622 kb on - strandat 2159.704 kb on + strandat 2159.704 kb on + strandat 2159.705 kb on - strandat 2159.705 kb on - strandat 2159.705 kb on - strandat 2159.705 kb on - strandat 2159.805 kb on + strandat 2159.806 kb on - strandat 2159.806 kb on - strandat 2159.806 kb on - strandat 2159.850 kb on + strandat 2159.850 kb on + strandat 2159.850 kb on + strandat 2159.850 kb on + strandat 2159.850 kb on + strandat 2159.850 kb on + strandat 2159.850 kb on + strandat 2159.850 kb on + strandat 2160.150 kb on + strand, within PfGW456L13_1961at 2160.150 kb on + strand, within PfGW456L13_1961at 2160.174 kb on + strand, within PfGW456L13_1961

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,158,019 - -0.3
2,159,413 - +0.2
2,159,413 - +1.7
2,159,454 - +1.6
2,159,479 - +0.5
2,159,479 - +1.6
2,159,479 - +0.6
2,159,479 - -0.5
2,159,479 - +1.5
2,159,479 - +1.0
2,159,481 - +0.9
2,159,481 - -2.0
2,159,481 - -0.1
2,159,481 - +1.1
2,159,481 - +0.7
2,159,481 - -2.3
2,159,594 - -3.6
2,159,594 - -0.5
2,159,620 - +0.8
2,159,620 - +0.1
2,159,622 - -0.9
2,159,704 + +0.0
2,159,704 + +0.7
2,159,705 - -1.2
2,159,705 - -0.6
2,159,705 - +0.0
2,159,705 - +0.5
2,159,805 + +0.1
2,159,806 - -3.2
2,159,806 - +2.7
2,159,806 - +2.4
2,159,850 + +0.9
2,159,850 + -0.6
2,159,850 + +1.8
2,159,850 + +0.9
2,159,850 + +0.6
2,159,850 + +3.4
2,159,850 + -2.2
2,159,850 + -0.7
2,160,150 + PfGW456L13_1961 0.73 +0.4
2,160,150 + PfGW456L13_1961 0.73 +0.6
2,160,174 + PfGW456L13_1961 0.80 +0.4

Or see this region's nucleotide sequence